Os02g0102800

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Revision as of 02:04, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0102800| Description = Pleckstrin homology-type domain containing protein| Version = NM_001052135.1 GI:115443640 GeneID:4327992| Length = 6...")
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Gene Name

Os02g0102800

Description

Pleckstrin homology-type domain containing protein

Version

NM_001052135.1 GI:115443640 GeneID:4327992

Length

6088 bp

Definition

Oryza sativa Japonica Group Os02g0102800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:146494..152581

Sequence Coding Region

146664..147002,147962..148036,148181..148234,148323..148388,148739..148836
,148937..148992,149082..149197,149283..149324,149427..149527
,149629..149724,149905..149969,150048..150119,150279..150434
,150537..150772,150874..150904,151020..151165,151264..151365
,151469..151513,151614..151754,151837..152214

Expression

GEO Profiles:Os02g0102800

Genome Context

<gbrowseImage1> name=NC_008395:146494..152581 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:146494..152581 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgctgagctcgtcggcgtcgaggcgggaggtcggcggcggcggcgccgcctccagcaccaagagcggcgagctgtccctgtccaaggtggccagcgtggccatacgggagtcgtcgggctcgggctcgggcgggatttccaagagcagcgaattgctgtcgagggcaggaaccatggcggcggcgagggaggcggcggcggcggcggtacaccacgaaggatggatggtgcgctacggccggaggaagatcggcaggtccttcttccacacccgctacttcgtcctcgacagcaggctcctcgcctactacaagaagaaacccaaagacaacatggtgccactaaaatcgctgctgatagacgggaattgcagggtggaggatagaggactcaaaacacatcatggacaaatggtctatgtcctgtgcgtttataataagaaagaaaaggagcatcagatcacgatgggcgcgtatgatattgaggatgctctggcctggaaaaagaatatagaactcattatcgatcagcaagaaaatatgacctccaaaaaccgcaaggcctttgcttcaatggactttgatacggaactaggagggcagtttatattctcagaccatgacagcgcagctgaagatgaagaggaacgacctatgttgattcgcaggacaactatagggaatggtccccctgaatcaatacatgactggaccaaagagcatgatatcggtccacccaatcagattgaccccattcaagttagctccaagaagaattggcgcctacttagatgccaaaatggactacgcatctttgaagaacttctggaattcgattatcttgcaagaagctgtagcagagctatgcgagctgttggtgttgtggaagccacatgcgaagccatttttgggctggtgatgagcatggatgtaacaagatatgagtgggactgcagctttcgctatggtagtttagttgaagaggttgacggccacaccgctatactgtatcataagttgcagttgcactggtgcccaatgttagtatggcctcgagacctatgttatgttcgctattggcggcgtaatgacgatggaagttacgttgtgctgtttcgatctacagagcatccaaactgtggacgtcaaaaaggatatgtgagggcttttattgaaagtggaggtttcaagatttctcctctcaagtgtcgcaacggaagaccccgcactcaagttcaacacctaatgcagattgatctcaggggatggctcctcaactactctccttcctttcagtatcattctttgctgcagatacaaaactgtgtagccggcctacgagaatacttctcccaaacagacgaaacacatataactccaaggattcctgtgatggaaaacatggttgacacatctgcagtacagaaagatgacaagaagagtaccgaagaagtagactccaagactaaaacaccagatcgaggacaagcggacagtaaaaacatgggaatcattgatgaagaaacagacgaggatgaggactatcaggttcctgaagctaacatagaggaagatcctaacaaagatgctaagcgtgcagacgaaccaccagaaaagattgatctatcatgcttttcgggcattcttcgttgcgatgcggatgagaaaagccgaaactgttggacagtacctgacagcaagctgtttaaagtccgtagcaagaacttcccgcatgataaatcaaagatacctgcagcgagttacctgatggagcttgcggccattgactggtttaaggacagcaagcgtatggataacgtaggcaggcagaaaggctgtgtagcccaggtagctgctgagaaagggatgcatacatttgttgccaacatacagatccctggatcaactcattacagcttggtgatgtacttcgtgacaaagtcgctgaagaagggatcactgctgcagcgattcttcgatggggatgatgagttccgcaatagcaggctgaagctgataccctctgtacccaagggatcatggatagtgcggcagagtgtagggagcacgccgtgcttgctggggaaggcggtggattgcagctacgtgcgtggagccggatacctggaggtggacgtcgacattgggtcgtcggcggtggccaacggggtgctgggtttggtgtttggtgtggtgacgacgctggtggtggacatggcgttcctaatacaggccaacacctacgaggagctccccgagcaggtcatcggcgccgcccgtctcgctcacgtcgaacccgccgccgctatcgtcccccaggaccttactccccctcctcctgcccttgccgacgacgacaacgccgctgcttcttcctccgaggatgatcatttgtccaagaaaaccaactaa</cdnaseq>

Protein Sequence

<aaseq>MMLSSSASRREVGGGGAASSTKSGELSLSKVASVAIRESSGSGS GGISKSSELLSRAGTMAAAREAAAAAVHHEGWMVRYGRRKIGRSFFHTRYFVLDSRLL AYYKKKPKDNMVPLKSLLIDGNCRVEDRGLKTHHGQMVYVLCVYNKKEKEHQITMGAY DIEDALAWKKNIELIIDQQENMTSKNRKAFASMDFDTELGGQFIFSDHDSAAEDEEER PMLIRRTTIGNGPPESIHDWTKEHDIGPPNQIDPIQVSSKKNWRLLRCQNGLRIFEEL LEFDYLARSCSRAMRAVGVVEATCEAIFGLVMSMDVTRYEWDCSFRYGSLVEEVDGHT AILYHKLQLHWCPMLVWPRDLCYVRYWRRNDDGSYVVLFRSTEHPNCGRQKGYVRAFI ESGGFKISPLKCRNGRPRTQVQHLMQIDLRGWLLNYSPSFQYHSLLQIQNCVAGLREY FSQTDETHITPRIPVMENMVDTSAVQKDDKKSTEEVDSKTKTPDRGQADSKNMGIIDE ETDEDEDYQVPEANIEEDPNKDAKRADEPPEKIDLSCFSGILRCDADEKSRNCWTVPD SKLFKVRSKNFPHDKSKIPAASYLMELAAIDWFKDSKRMDNVGRQKGCVAQVAAEKGM HTFVANIQIPGSTHYSLVMYFVTKSLKKGSLLQRFFDGDDEFRNSRLKLIPSVPKGSW IVRQSVGSTPCLLGKAVDCSYVRGAGYLEVDVDIGSSAVANGVLGLVFGVVTTLVVDM AFLIQANTYEELPEQVIGAARLAHVEPAAAIVPQDLTPPPPALADDDNAAASSSEDDH LSKKTN</aaseq>

Gene Sequence

<dnaseqindica>171..509#1469..1543#1688..1741#1830..1895#2246..2343#2444..2499#2589..2704#2790..2831#2934..3034#3136..3231#3412..3476#3555..3626#3786..3941#4044..4279#4381..4411#4527..4672#4771..4872#4976..5020#5121..5261#5344..5721#gttctctcctccctagctgcggacggacttggatccatccatctcccattcattcattcattcattcatgtggccatccatccaccatcttgcatgctagctagctaccctgcaggcccataacgacattattcaattcgaattaattccatcatcatataataatatatatgatgctgagctcgtcggcgtcgaggcgggaggtcggcggcggcggcgccgcctccagcaccaagagcggcgagctgtccctgtccaaggtggccagcgtggccatacgggagtcgtcgggctcgggctcgggcgggatttccaagagcagcgaattgctgtcgagggcaggaaccatggcggcggcgagggaggcggcggcggcggcggtacaccacgaaggatggatggtgcgctacggccggaggaagatcggcaggtccttcttccacacccgctacttcgtcctcgacagcaggctcctcgcctactacaagaagaaacccaaagacaacatggtacccgccctaactccatcatcattcattaatcaatcaattattactactcgtactaatttcaaacactcttactatcactgccttgttttaattttccttcccctggcacacgcttgtctggccaattacattgtgtaacaaaaaaactcttttcattctaatatattgatgcgttcgcgaaaaaaaaacactcttactattacacatttgcactactactcatagtaaattcaaacacacacacacacactatatatatatatatatatatatatatatatatatatatatatatatatttggcaccaaaaattaaatatgcattaattcagtcacatcatctagaatatagtagcctttggatccttcttatgctttgatctcaaccatccatttacatatgcatttacaacccactaaatacatagttattagtataaaattcaatgtgcattaaaccataacatctacaaaactaatagtcattggatctctctctcatatttgatactccctccatccctaaatatttgacgccgttgacttttctttttatacatatctgaccgttcgtcttattcaaaatcttttgtgaaatatgtaaaactctatatatacataaaagtatatttaacaataaattaaatgataggaaaagaattaataattacttaatttttttaaataagacgaacgatcaaacatatttaaaaaagtcaacattgtcaaatatttagatatggagggagtatataactatcccagctgtcatgtaaaattgaaatttataatcaactactattgagcaaatattctctatttacatattataagtacttgatttacatattgctttcttttaattttctataaagtatttttaaatttcctgctgcaatgcgcgggatatgcactagttatatgtaataatgttgtacatgcatatatccatgcaggtgccactaaaatcgctgctgatagacgggaattgcagggtggaggatagaggactcaaaacacatcatggacaagtatccattatttcttctaatttatctcctttccgtaccatccttcttctcatgatatactgtatcaaccagctggcttttacacctgacattgcccccgtccttctcaattgacgatgtatcataatgatccttaattttcagatggtctatgtcctgtgcgtttataataagaaagaaaaggagcatcagatcacggtttgttctaactaaacctgactgcatgttctcgatctctttcattcagcgttatatcagtatatatatgactagatttaattcgcagatgggcgcgtatgatattgaggatgctctggcctggaaaaagaatatagaactcattatcgatcaggtgcagtaatttttcttcatcttacagttttgactttgcatatgtaaacacaacaagtaattttggagtactggataattctcaaatttcaatgaaaatccattttcatgtcgaatcatctaatacccaaaatatgtgactcttagaccgtccagctgccttattcaggattttctaatgaattaaaccgaacaaggacctttgtacgtactgtttaaagggtagttaatttgggctggcagaactttaggtgtactctttacggatatatgtagtaaattaagctgcaaaacaatatggatgctccatgttgttttgtgaagtatcacatcttcacattgttgcagcagcaagaaaatatgacctccaaaaaccgcaaggcctttgcttcaatggactttgatacggaactaggagggcagtttatattctcagaccatgacagcgcgtaagtgacatcccatcttctctcttagattatcttacaaacgacaaacaaacaagatctgaaataagctgaaatataatttcactacgaatatatgcagagctgaagatgaagaggaacgacctatgttgattcgcaggacaactatagggaatggtaacaagttatctgcaagttttgttcttaatttccgtttgtggatcgatatgctacagaaattcaccacctcatttctggtgtgctaggtccccctgaatcaatacatgactggaccaaagagcatgatatcggtccacccaatcagattgaccccattcaagttagctccaagaagaattggcgcctacttagatgccaaaatggcaagcacacaagactcctcctcctcctccttaggttatcagtcaatacttgtctacttgttgcttacttccttgtcattcgcaggactacgcatctttgaagaacttctggaattcgattatcttgtatgtccagtctactcactctcgactactgctagacagttaattgattagatactatgcatcttctgaaattcttgatgatttttcacttgtcctgtgtaggcaagaagctgtagcagagctatgcgagctgttggtgttgtggaagccacatgcgaagccatttttgggctggtgatgagcatggatgtaacaagatatgagtaagcatatttactactatcacctatatatattcctactacagttacatattaatcttgagattacgtactgatgtttaattattgatcatcacgtataggtgggactgcagctttcgctatggtagtttagttgaagaggttgacggccacaccgctatactgtatcataagttgcagttgcactggtgcccaatgtaactagtcttctttcttgtccgtagcattttcaaacatcctcctcctcttcttcttcttcttttttttggagaaatttcctcttatttttgagtgcacaactaaatggtagtactaatatttcggattatctatcagattgaaacttacacattcttccattctacatgaacatgcaggttagtatggcctcgagacctatgttatgttcgctattggcggcgtaatgacgatggaagttacggtaaaaatattcaaatcttttccatggaatttgctgttttgtagagcaattaatttctgattgtttgtttggacgcagttgtgctgtttcgatctacagagcatccaaactgtggacgtcaaaaaggatatgtgagggcttttattgaaagtaagcttctctctgagcatctgaaatcctgcattaatttacctgctgagatcgatcaggacaggaggaggagagacagtatactagttccatagaaaacagacagaaataaatgtcaaatgaagttccttttcttttctgaaattcctactagttcaggtggaggtttcaagatttctcctctcaagtgtcgcaacggaagaccccgcactcaagttcaacacctaatgcagattgatctcaggggatggctcctcaactactctccttcctttcagtatcattctttgctgcagatacaaaactgtgtagccggtactaactactgccactgctcgaaacttagtttgctcaaatgaattagtgccatcatcttactacttcactgttatcctaattaactctacttacttcaaggcctacgagaatacttctcccaaacagacgaaacacatataactccaaggattcctgtgatggaaaacatggttgacacatctgcagtacagaaagatgacaagaagagtaccgaagaagtagactccaagactaaaacaccagatcgaggacaagcggacagtaaaaacatgggaatcattgatgaagaaacagacgaggatgaggactatcaggttcctgaagctaacatagaggtgcttcatggccaatatataacattacatatgaacagtgaatgagttttttgtgtttcctcattctaactaaactgtgatcaaaattaattaatgtgcaggaagatcctaacaaagatgctaagcgtgcaggtatgattcctttttttttctgcaatttattttggtattaatctggtaagttccataggcaatcatatattcttcccctgtaacaatgacacggtttgccttgtgattatggcagacgaaccaccagaaaagattgatctatcatgcttttcgggcattcttcgttgcgatgcggatgagaaaagccgaaactgttggacagtacctgacagcaagctgtttaaagtccgtagcaagaacttcccgcatgataaatcaaaggtccaagcttttattgcttaatttgtttctttggaattgaatccagtgagtgagattatatgaagaagctgagcacactgctcacattgaaattacagatacctgcagcgagttacctgatggagcttgcggccattgactggtttaaggacagcaagcgtatggataacgtaggcaggcagaaaggctgtgtagcccaggtaaacataataaatcttgtgatcgatgatggcttatcctatctgaagttatcaagtagtatcatcacagaacttggcggcttggtcgatgtttgttttgtaggtagctgctgagaaagggatgcatacatttgttgccaacatacaggtaagtatgtttgcagattcagagctagctagctagctaggaggaaacattggcaatcaaagttatagttatgggtgtgtatatatatattgtgttgtagatccctggatcaactcattacagcttggtgatgtacttcgtgacaaagtcgctgaagaagggatcactgctgcagcgattcttcgatggggatgatgagttccgcaatagcaggctgaagctgataccctctgtacccaaggtaggtagtccagctgttggtctcaggtagtgaactgaactgaactgttggtctcaggtggtggggtggggtgtgcccgcagggatcatggatagtgcggcagagtgtagggagcacgccgtgcttgctggggaaggcggtggattgcagctacgtgcgtggagccggatacctggaggtggacgtcgacattgggtcgtcggcggtggccaacggggtgctgggtttggtgtttggtgtggtgacgacgctggtggtggacatggcgttcctaatacaggccaacacctacgaggagctccccgagcaggtcatcggcgccgcccgtctcgctcacgtcgaacccgccgccgctatcgtcccccaggaccttactccccctcctcctgcccttgccgacgacgacaacgccgctgcttcttcctccgaggatgatcatttgtccaagaaaaccaactaagctagcacctctctcaacgcacgcactgcaacttatcaatcatttatcttcttgtaatttctaattatttccgaggctcatagcaagctttgttttttttcttttcatctttttttttatctcgttaagttgtttgcaaagtacagctggttttcttctacgtaggaacaaagataaatctagctagtgacagtatttcgttggaacctaatattatagactgagatattttgtttaggcttagatttgctgtctttggctttaagtcagacttttaattaacttacactccctccatttttttaattgacgacgccattgacttttgaacacatgtttgaccattcgctttatttaaaaattttat</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0102800, RefSeq:Os02g0102800