Os02g0115600

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Revision as of 02:06, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0115600| Description = RNA binding S1 domain containing protein| Version = NM_001052207.1 GI:115443784 GeneID:4328072| Length = 5559 bp| D...")
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Gene Name

Os02g0115600

Description

RNA binding S1 domain containing protein

Version

NM_001052207.1 GI:115443784 GeneID:4328072

Length

5559 bp

Definition

Oryza sativa Japonica Group Os02g0115600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:818981..824539

Sequence Coding Region

819022..819264,819996..820761,820846..820920,820995..821112,821328..821445
,821644..821742,821835..822134,822211..822318,822443..822514
,822580..822666,822887..822958,823063..823152,823795..823902
,824015..824083,824177..824251

Expression

GEO Profiles:Os02g0115600

Genome Context

<gbrowseImage1> name=NC_008395:818981..824539 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:818981..824539 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaagccttcgccgccgccgccgccgcggccggcgtcttcgcgggcgccggcgcagctgcgcgccccgtactgctccgccgcagaggtgccccccggtccggccgggtgcgcctcctccgagcgccgccgcgcgccggtggggacagaggaggggacctgcccccgctcgacgagtgggacaggatggagctggagttcgggcgcttcctcggcgaggatcccaagctcaccctcgccaagatacttctcaagaaagcagacccagatgcttcatcgctcgatgtagagaatctaattgccaacaaaaaggccaagttggatgatattttgagggagtttatggatgctaacagacaggaacagacttctgaatcaccagaggaaacaagcaagccaatggtagacaaaaattctccaagcatgtcaagacctgttcagaccaatgcaaagcaagatgagcctgctttgactctgctgcgaccagcaggaagcaaattgaagcaagatgatcctcctttgactttgcagcgaccagcagggagcaaacccaagcaagatggtccttctttggctccattacgaccggtagggagcaagccaaaggaaaataacacttctttaaccttggtgcggccaatgggaagcagaccaattgtccggggtaaaccggtgcaagatagttggcctagcaaggggagcttagctgccagaagagagtcgagcgatgttggcagcacctcaagaaagaacaatgtggatgtttccttgcggaaacccaccatacatcagagtgatgatgatgaattgaagtcgaagctgaatctgaaaccaaatattgacttgaaaatgaggaaagatatggacgaggatttggccaacatctctcttcttcaaaagccagagctttcagtagataatatgaattcaaatcaagagaagtctgatgctggacctgcctctgttgcttctggagaggataatggtgcagttgacccagaaacaaatggtcttgatgaaagagtagtgattgacagtattaatgatcgtgagtcatctgtgcttcctgatgatcttagtgcagaattacagccatctgagcaaaattttaaccgagaaggcgacccttctgtggtggatgatcaatcagccgtcagcagtaatttctctatgcaagctttcttgcaaggaaaacctaagatgaaagacttagctgttgaaacatttccatctcaagttgatgctgagaagatgaatgccagtgagaataacatgaattatgttgatgatggaggcaatgtgttatcatcgaaattagaggacatcacagagagtgactggacaaggctggagaattatgcaagtaccggagaaaaagttgaggtggagctgataaactgcagctcgaaaggatttgttgtatcactcgattcattgataggtttcttaccgtatcgcaatcttgctacaaaatggaaattcttagcttttgagacttggttaagacaaaagggtggcgatccttcactcttcaagcagagtgtgggcatagaagaaagttttgaggtcaatgacaggaacatagaatcagtatctagctcagattcagaacttgctgtgcaggatcaaggttctatgccatctaaggaaaaatttgaagatcttcttcgaacatataacactgagaaatctaaattcttatcatcatttatcggtcaaagactccgtgtttcagttgtcctggctgacagaaaatccaagaaaatatttttctctatgaagccaaaagaaagtgaagaattgattcagaaaaagaaaagtctcatggctaagctcaatgtgggagatattgttgaatgcactatcaagcgatttgtttactttgggatatttgttgaggttgaaggagttcccgcattaattcagcagtgggaagtgtcttgggatgaaaccttggacccatcagtttcttacaaaattggtcaggttgtggatgctaaagttattcaactggactataataataaccgcatatttttgtcacttaaagatgtaaagccaaatccttcagtaggcgcattggaagctgtcattggtgaggaactatcactgggtggagctcttgaacctgcagaagcagattttgagtggcctgaagtggatgctctcatggaagagatgaaaaatattgaggaagttagggatgtttataaaggacgattcttgcgaagcccaggactagctccaacctttcaggtgtatatggcacctttggttggtcagaaatataaactccttgcacgctatggaaataatgtccaagaggtgatggtggagacatcattagacaaagaacagttgaaagaggcagttttagcgtgcacaaacagggtgagctga</cdnaseq>

Protein Sequence

<aaseq>MEAFAAAAAAAGVFAGAGAAARPVLLRRRGAPRSGRVRLLRAPP RAGGDRGGDLPPLDEWDRMELEFGRFLGEDPKLTLAKILLKKADPDASSLDVENLIAN KKAKLDDILREFMDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLL RPAGSKLKQDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRP IVRGKPVQDSWPSKGSLAARRESSDVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNL KPNIDLKMRKDMDEDLANISLLQKPELSVDNMNSNQEKSDAGPASVASGEDNGAVDPE TNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNFNREGDPSVVDDQSAVSSNFSMQ AFLQGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNVLSSKLEDITESDWTRL ENYASTGEKVEVELINCSSKGFVVSLDSLIGFLPYRNLATKWKFLAFETWLRQKGGDP SLFKQSVGIEESFEVNDRNIESVSSSDSELAVQDQGSMPSKEKFEDLLRTYNTEKSKF LSSFIGQRLRVSVVLADRKSKKIFFSMKPKESEELIQKKKSLMAKLNVGDIVECTIKR FVYFGIFVEVEGVPALIQQWEVSWDETLDPSVSYKIGQVVDAKVIQLDYNNNRIFLSL KDVKPNPSVGALEAVIGEELSLGGALEPAEADFEWPEVDALMEEMKNIEEVRDVYKGR FLRSPGLAPTFQVYMAPLVGQKYKLLARYGNNVQEVMVETSLDKEQLKEAVLACTNRV S</aaseq>

Gene Sequence

<dnaseqindica>42..284#1016..1781#1866..1940#2015..2132#2348..2465#2664..2762#2855..3154#3231..3338#3463..3534#3600..3686#3907..3978#4083..4172#4815..4922#5035..5103#5197..5271#aaaccccaccgcgacctcgccggccttcctccgctccggccatggaagccttcgccgccgccgccgccgcggccggcgtcttcgcgggcgccggcgcagctgcgcgccccgtactgctccgccgcagaggtgccccccggtccggccgggtgcgcctcctccgagcgccgccgcgcgccggtggggacagaggaggggacctgcccccgctcgacgagtgggacaggatggagctggagttcgggcgcttcctcggcgaggatcccaagctcaccctcgccaaggtttccttcctcccgtgtgcctgccttactactgctctcatctcatccctagagagagtagaggctctcggaataagatggaaatgtcgccttgttttttttaaaaaaattcaatgcgaattcatacttgcgttgatagataggatgtcacgagtgttctaattgtagcaaaacgatcgttgcgacttgtgagtatcatgcgggtatgtactagaaatgtttgtgcataattgtggactagtgttcaggttctactgcagccttatttttttctagtatttgtaccaccgcatatgttgttatgttgtccaatatgactgtattgttgtactccatgcttaagtttggatggtttgtgctaaatttacttatttttagtttaaaataagaaggtcgctagatggagtagtttagtactcctatatactatactatccagtcttgctaggatgttcctaccaatgtggctagtcgcaattgctcattgcagttggagcctaataatctgaggattacaattttgaattttatttttgtggctgaaccttgactcaactcccaagtagtagtactgcccaaatgtattgctaggattctaagatctgataactgcgaacctgtacactacaaactgacacatggttatttcacacgtgttctgtagcgatgtttctgtcacttgattttctcatcattagcatgccttaagtgtttttgaattattccctcagatacttctcaagaaagcagacccagatgcttcatcgctcgatgtagagaatctaattgccaacaaaaaggccaagttggatgatattttgagggagtttatggatgctaacagacaggaacagacttctgaatcaccagaggaaacaagcaagccaatggtagacaaaaattctccaagcatgtcaagacctgttcagaccaatgcaaagcaagatgagcctgctttgactctgctgcgaccagcaggaagcaaattgaagcaagatgatcctcctttgactttgcagcgaccagcagggagcaaacccaagcaagatggtccttctttggctccattacgaccggtagggagcaagccaaaggaaaataacacttctttaaccttggtgcggccaatgggaagcagaccaattgtccggggtaaaccggtgcaagatagttggcctagcaaggggagcttagctgccagaagagagtcgagcgatgttggcagcacctcaagaaagaacaatgtggatgtttccttgcggaaacccaccatacatcagagtgatgatgatgaattgaagtcgaagctgaatctgaaaccaaatattgacttgaaaatgaggaaagatatggacgaggatttggccaacatctctcttcttcaaaagccagagctttcagtagataatatgaattcaaatcaagagaagtctgatgctggacctgcctctgttgcttctggagaggataatggtgcagttgacccagaaacaaatggtaaggtacaacatcccaaatgcaacaggccatgatgagctggttcttttggatctgatggattgcaaatttttcaatcttcaggtcttgatgaaagagtagtgattgacagtattaatgatcgtgagtcatctgtgcttcctgatgatcttagtgcaggtaaggaaggcataatagatcagtgactagtctctattcatccatcatactaatgttatgttaaaattttcaagaattacagccatctgagcaaaattttaaccgagaaggcgacccttctgtggtggatgatcaatcagccgtcagcagtaatttctctatgcaagctttcttgcaaggaaaacctaagatgtactttctgatgaaactatgcacttctatttttagcataacattttcatcgcttgtaaaatatatatttgacatttctgcttaactaattgtacttcatgttgttacattgatccaaattgggtgtatcccttcttcttttgagtaactcacgtcattacagtttctcgcatgttggccgagctaccactaatatggcaattactacattgtaggaaagacttagctgttgaaacatttccatctcaagttgatgctgagaagatgaatgccagtgagaataacatgaattatgttgatgatggaggcaatgtgttatcatcgaaattagaggtaatgtgaatttcataatgtttgagcttcagcatcttataggcttattatcaaactcaacaactgtagttcttagagtgggtgttgccttctgtggaatgagatgtttccctattcaagggtcattgagtcatatttcatccttttaattcttctagatattgattataactcttgtttatggaatcactaatgcaggacatcacagagagtgactggacaaggctggagaattatgcaagtaccggagaaaaagttgaggtggagctgataaactgcagctcgaaaggatttgttgtaagtttttgtccagttttagaattagcacctttttaatcaagttataatgaactgatggtacctgacctctatcatcatttctttgccaggtatcactcgattcattgataggtttcttaccgtatcgcaatcttgctacaaaatggaaattcttagcttttgagacttggttaagacaaaagggtggcgatccttcactcttcaagcagagtgtgggcatagaagaaagttttgaggtcaatgacaggaacatagaatcagtatctagctcagattcagaacttgctgtgcaggatcaaggttctatgccatctaaggaaaaatttgaagatcttcttcgaacatataacactgagaaatctaaattcttatcatcatttatcggtcaagtatgaatcttttgttagtctccaaacattcttcagttgaacccttttagctaacatgccattgcttgttttgcagagactccgtgtttcagttgtcctggctgacagaaaatccaagaaaatatttttctctatgaagccaaaagaaagtgaagaattgattcagaaaaagaaaagtctcatggtacttactatgttgaaatgtctattagcttagttcttttgctatgcttagcatggtccaacattttcccttttattacttatttatttgttcggctgcacacactgtttttcttaacatgcaggctaagctcaatgtgggagatattgttgaatgcactatcaagcgatttgtttactttgggatatttgttgaggtaggtctaaccatattttctacgctttttcattcagtatcagcagctaactgtttctttcaaaggttgaaggagttcccgcattaattcagcagtgggaagtgtcttgggatgaaaccttggacccatcagtttcttacaaaattggtcaggtaacacttgttttttgcatggaccttatttttgttgcaatctggctttgttaacagtgtgtgtgcacccatgtgtggataaaggaggagttgcaagttctcatgttcattttgaaactgacatacctctctatatcgtctagaaacttagatacatcacgtgacaatgatcataatgccaaactttctgggatttacagaaatttattttgatttccaggttgtggatgctaaagttattcaactggactataataataaccgcatatttttgtcacttaaagatgtaaaggtacctgggggcctttccccttttccctcatggtggttcagcttattgaattgctgatttcaggctttcatttattatttttgtcatttcccccttctatgcagccaaatccttcagtaggcgcattggaagctgtcattggtgaggaactatcactgggtggagctcttgaacctgcagaagcagattttgaggtttgtgtgacttatggcattatttatcatcatcttgaaatttttcattgtttgtgatttgaaggttatgcatatttagagggcctgaaatctaaatctaatgccctctctctattcaactgggaaaaaccacgtcatcagattgttttctaacttctggctaaatgatgaaaacatgtatagctgctacatggcagttgcatcccattttctgagttatgtataatatcttagcctgtgccaaagagatcgaaactttttgtaggtttgctggtagggcctcctgcatggtctgtgattgaatatgggcatacctgagttttttcccttctattgcaagcatgttttgtcatacagaagttgatagagctctgtatttgaatgcggggagtctgtgctacccaagcctggatccttcctatcttcttagtttgtttaattagttattgttcttcattcaaacttcttttctggatattttgtggacatttctgagagctgtagacatagcagtgaacttgggtcatgcaatgtttgtttcatacgtctgccttgtggcattgattttctttcttttccttatccatccactttgttgcatccttgttttaacactccattatttgatcataattattttagtggcctgaagtggatgctctcatggaagagatgaaaaatattgaggaagttagggatgtttataaaggacgattcttgcgaagcccaggactagctccaacctttcaggtaaaatctaaaatgtagatacgtttcatgttcagcattcacacaattctgcaccttagttgttggaattgacacctgaccttatttcctttttaaatctattgcttgctaggtgtatatggcacctttggttggtcagaaatataaactccttgcacgctatggaaataatgtccaagaggtatggacaattaatgttaaatgcttgatcgagtcacaagctgaaaattgtgtgttgtcattcttacatagcatggactgaactcttgtgcaggtgatggtggagacatcattagacaaagaacagttgaaagaggcagttttagcgtgcacaaacagggtgagctgatgatcagcgtctccgtgctgtagtatttttccttcttttagcttgcgaagcagatggttgtacagaattgttgtggcagtccaattttgcatccttgtagcatgcttttgagtcgtttacacctgattttcttccttttcaagttgaaaataccaggtgatatgtagtcctagctcaactttgtagaggatgacaggtgtaaatcgccttgatacgttactacggaattgcaacagaattcgatttgcatctttcacggtgctagaattaatctaccatatttttgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0115600, RefSeq:Os02g0115600