Os02g0116500

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Revision as of 02:06, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0116500| Description = Similar to Protochlorophyllide reductase homologue| Version = NM_001052214.1 GI:115443798 GeneID:4328079| Length = 4...")
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Gene Name

Os02g0116500

Description

Similar to Protochlorophyllide reductase homologue

Version

NM_001052214.1 GI:115443798 GeneID:4328079

Length

4514 bp

Definition

Oryza sativa Japonica Group Os02g0116500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:871105..875618

Sequence Coding Region

871106..871203,872559..872679,872975..873092,873218..873354,873583..873684
,873862..873954,875047..875119,875213..875478

Expression

GEO Profiles:Os02g0116500

Genome Context

<gbrowseImage1> name=NC_008395:871105..875618 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:871105..875618 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gccagcaacctctccaacccgctcgagcttcccccgctcgacggcgtctccttcgtcgtcaccggcgccaccagcggcatcggcctcgagatcgccagacaacttgcactggcaggaggtcatgttgtgatggctgttaggagaaccaaattggcgcaggagctcattcagaaatggcagaatgataattcagagataggaaagccccttaatgctgaggtgatggagcttgacctactctctctagattcagttgtaaaatttgccgatgcctggaatgctcgtatggcacccctacacgtattgatcaacaacgctggcattttctctataggagaaccccagcgtttctcaaaggatgggtatgaagaacacatgcaagtgaaccatcttgcaccggctttattggcagtgttgcttctaccttcccttcttcgtggttctcctagcagaattgtaaacgttaattcagttatgcacacagtaggttttgtagatgctgaagatatgaacttgacatctggaaaacggaaatttacaagtttgatgggatactcaaatagcaagttagcacagataaaatttagcagcatgcttcacaggaggattccggcagaggctgaaattaatgttatttgtgcctctcctgggattgttcatacaaatgttgcaagggatctccccaagcttgttgtagctgcatatcatttgattccgtacttcatattcgatgctcaagaaggttcaagaagtacactgttcgcagcttctgatccccaagttccagattactgcgagatgctcaagtctgaagactggcctgtttgtgcttgcatctcatatgactgtaatccaatgaatgcatctgaagaatcacataacctcgagacgtcgcagctagtatgggagaagacattagagatgattggcctcccaccagatgccgtggacaagttcatcgaaggggaatcggttcagtgtcgttatggacaacagaaggcagaatag</cdnaseq>

Protein Sequence

<aaseq>ASNLSNPLELPPLDGVSFVVTGATSGIGLEIARQLALAGGHVVM AVRRTKLAQELIQKWQNDNSEIGKPLNAEVMELDLLSLDSVVKFADAWNARMAPLHVL INNAGIFSIGEPQRFSKDGYEEHMQVNHLAPALLAVLLLPSLLRGSPSRIVNVNSVMH TVGFVDAEDMNLTSGKRKFTSLMGYSNSKLAQIKFSSMLHRRIPAEAEINVICASPGI VHTNVARDLPKLVVAAYHLIPYFIFDAQEGSRSTLFAASDPQVPDYCEMLKSEDWPVC ACISYDCNPMNASEESHNLETSQLVWEKTLEMIGLPPDAVDKFIEGESVQCRYGQQKA E</aaseq>

Gene Sequence

<dnaseqindica>2..99#1455..1575#1871..1988#2114..2250#2479..2580#2758..2850#3943..4015#4109..4374#cgccagcaacctctccaacccgctcgagcttcccccgctcgacggcgtctccttcgtcgtcaccggcgccaccagcggcatcggcctcgagatcgccaggtccaatctcttatcccttctacttcttctacttctactgctgctcttgccttgcccttagagatgatgggtggttcaattcgggcatgcgaagattctctggatggatgccatcaactcaagatttatcgatagcctttttggtttctgaattccaaataattcgtagtgttctcgacaatatagtgtgtgtaatgtgggcacccactggtacgaggtttagctcttcttttcttctcctgactttaaatgtcatgtcagtttatccaagcctcgctggttggtttgtagtaggcagatacggtagagttagtgaagttcttatttttactatttgatgaatcgttttgggatggcaatactatggtgaaaatagatttatatgtgctaacctgaaatttttggggcttttaactatttgccacttttagatttggcaagtaactatttgccacccctatatcaatgacatgtgggtcctggcaaaaagttaattgccacatctaaatgtggcaaatggttaaatatctcgaaatttttcgaaacaaaataataggggtactctcatacatgttacagtaatgaattggtccttgactgcacttcatcttgttacttcacaagtaaaactgtcaaaaatattcatctggcttcatcaatttggggagcatctttgataggtttccaatcaagaaacatgaaatctatcaagctaatttgccagatatcactttttattcagcgatatttcttattgggaagctgagtcatattattggttcctatataattgtatatgtgaattttgtaaagacttttgtttggttcaatagatttggtgttacatcttctaatgtagaaaagtattacaaatttgaaaatgcctaatcttcttataaatttcacatctctggaactaatacaagtgtatatttgcccttgtgctctggaacaaaatactaggggtactcatacatgttactgaattggtccttgactgcagttcatcttgttacttcataagtaaaactgtcaaaagtcttcatttggcttcctctatttggagagtgccttgataggattccaatcaataaacatgaaatctatcaggctaatttgccagacctcactttttagtcaacggcatttcttatcggagctgagtcatatcgttggttcttatgtaattgtatctgtaaaatttgtaaagacttatgttcggttcaatagatttggtgttgcatcttctaatgtcgaaaagtattacaaatttgaaaacgtgtaaacttcttataaatctcacatctttccctataactaatataagtgtatatttgcccttgtggtcaattcagacaacttgcactggcaggaggtcatgttgtgatggctgttaggagaaccaaattggcgcaggagctcattcagaaatggcagaatgataattcagagataggaaagccccttaatgctgaggtaatcatgaagacactatctacaggctgtacacaattgttgtctcatggcattttactagtttgtcttgtttaacacacataaatttgaatttctggccttatatgctcaaatcgaattccaactttcaagtaaatactatagtgtgtccttcacatctagcttttctaatcaattggaagatatctgttgcgaatgcatatcttaattggtaaagacaaagacatgtttctccaacatttatgtggtttagctgcagatcatttgacaattttttaatatattactctttaaggtgatggagcttgacctactctctctagattcagttgtaaaatttgccgatgcctggaatgctcgtatggcacccctacacgtattgatcaacaacgctggcattttctctataggaggtctgtatgcttcgacgataatctgtttcttttgtttttggtctatcaaatcaatccaacttgcattttactcggtaaagaattcaaattgtaccagacataactaactctttcattttctgtagaaccccagcgtttctcaaaggatgggtatgaagaacacatgcaagtgaaccatcttgcaccggctttattggcagtgttgcttctaccttcccttcttcgtggttctcctagcagaattgtaaacgttaattcagttgtgagtctctactcttacctgtgctgtgactgcctacttaggaattgttggaaagtgaccacggtttccttatcatgtataaaattggttattaatcctaacctcaatattttgaaaaacttgtctgaattcattattttaatgacaattaagaatcatttctgtgtaaaatttacaaatacctccagatacacttctgccatctaacaagcttgtctgcaatttcagatgcacacagtaggttttgtagatgctgaagatatgaacttgacatctggaaaacggaaatttacaagtttgatgggatactcaaatagcaagttagcacaggtatcacagaggtgttagattgctaattagcagttgttccctttgcaacgttaatttccttattgtactttgtattgttttcattctgctttattgcaagggaacaatcagtatctaaactgtccatgcacttttttcatgctatgtaggtctgatttattcttgtttcacttgcagataaaatttagcagcatgcttcacaggaggattccggcagaggctgaaattaatgttatttgtgcctctcctgggattgttcatacaaatgttgtgagttccgtttccccctgtccaatgtttgccctgtgaaacatgctatttcataggaattaaagaaccagaagtttgtggtattagttttgcatatgcctctagccagaccaacccctttcgggtgttaccataaagagaaaagaaacacatgcactattggggaaaaaatggaagccaaagaattttgtagtaacttaatgcaaggacagttgaaaagaaataccacaacctaaggctacatattttccgagaggattagtcatgtctatttttagttcaactcagcaaagaatctctcttgagcatcctaatgaacctctattaatctgtgctctgaataaacctggccaaatggaccgtgccaagccgggccggcccgagcacggcagtactgtagccggcccaggcccggcacggcacgccagcctgtgggccgtgccggcacggcccgttatcccgtgccgtgtttgggccgatgcctcagcccgtgggctggcacggcacggcacgtttactgtagcgtaccggcacggcacggcccaggcatggcacggcccaccggcccatttattttcctacgattttctaatttttcccatatatttctcatattttttatttttttccacattttatcctatttgtaccatatattttatgatatatttcctaaattttcctcacatttatcctatatttatcattttttcctttatattatgttttttctgccttttttctttttttcccctcaaatttcaatttttatgggccacatgtactagtgggccggctaccagcccacgtgccactacagtagccgtgccggcccggcacggcccagcaccttcttgggccgtgcttgggccgtggccttggcacgtgggccggcacggcacggcccgctataggagccgtgcctaacgggccgtgccctagtgggccgtgccgtcggcgtgccgtgtcgtgctgggccgggccgcccgtttggcctgctatagctctgaatatattggcaaacttattctcatttccttctgttagtttattatttgtatgttgatctaataatgcccataaatggtgcaggcaagggatctccccaagcttgttgtagctgcatatcatttgattccgtacttcatattcgatgctcaagaaggtgatgtacaggacctttcagacgttgctatctatcaattgacaactctccaccttctgacatgcacaatatcttgttactgatctaatgcaggttcaagaagtacactgttcgcagcttctgatccccaagttccagattactgcgagatgctcaagtctgaagactggcctgtttgtgcttgcatctcatatgactgtaatccaatgaatgcatctgaagaatcacataacctcgagacgtcgcagctagtatgggagaagacattagagatgattggcctcccaccagatgccgtggacaagttcatcgaaggggaatcggttcagtgtcgttatggacaacagaaggcagaataggctatttcgtagacagcaaatatgtgataatttcgaatgttcgatccatttcatcatgcgattagtttgccagtggttttgttccagtactttgtaatagtacatctgtcatacccttttttttgtttcatatggttggt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0116500, RefSeq:Os02g0116500