Os02g0117500

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Revision as of 02:06, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0117500| Description = Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3)| Version = NM_001052222.1 GI:115443814 Gen...")
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Gene Name

Os02g0117500

Description

Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3)

Version

NM_001052222.1 GI:115443814 GeneID:4328089

Length

5172 bp

Definition

Oryza sativa Japonica Group Os02g0117500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:918797..923968

Sequence Coding Region

920128..920392,920491..921839,921921..922198,922534..922565,922654..923060
,923210..923713

Expression

GEO Profiles:Os02g0117500

Genome Context

<gbrowseImage1> name=NC_008395:918797..923968 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:918797..923968 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagataggtctgctcatgttgcttgttctcttcctggtcatgtcccctgatgggatccgcaggagcttagccgcgaggccttctattgtgaatattggggccattcttcgatttaactccaccattggaggtgtttcgatgattgctatccaggcagccttggaggatattaattctgattcaacaattctaaatggaacaactttaaaagttgacatgagggatacaaattgtgatgatggtttccttgggatggttgaagctttgcagttcatggagactgatgtgattgcaattattggcccacagtgctcaacaattgcacatatcgtttcatatgtagcaaatgagctccgagtccctcttatgtcctttgcatctgatgcaactttgtcatcaattcagttcccattctttgttcgaactgctcccagtgatctctatcaaatggatgctgtagctgcaatagttgactactaccgttggaagatagtgactgctatatatattgatgatgattatggccgaaatggaatagccacattggatgatgcacttactcaaaggcgctgcaaaatctcctacaagattgcatttcctgcaaatgctagaaagagcgacctcataaatttattggtcagcgttagttatatggagtctcgtgttatcatcctccatactggtgctggacctggactcaagattttctctctggcgaaccaactaagcatgatgggcaatggctatgtatggattgcaactgattggctttctgcttatctcgatgctaattcatcggttcctgatgagactatgtatggcatgcaaggagttctcactttacgcccacacattcctgaatcaaagatgaagagtaatttgatctccaagtggagcaggttaagcaagaagtacagttatagttatctccgcacaagttcatatgctttttatgtttatgatagtgtatgggcagtagctcgggctttggatgctttctttgatgatggtgggaagatttccttttcaaatgattcaaggctgcgtgatgaaactggaggtactcttcaccttgaagcaatgagtatttttgatatgggaaataacttgttggagaagattagaaaggcaaacttcactggggtgtctgggcaagtgcaatttgatgctactggtgacctcattcatcctgcttatgatgtcataaatataattggaaatggcatgcggacagttggctattggtcaaattattctagcttgctgtcgactgtccttccggaggttctctattcagagcctcctaacaattctctagctaatcaacatctatatgatgttatttggcctgggcagactgcacaaacgcctcgaggctgggtttttccttctaatgctaaggagttgaaaattggtgtccccaacagatttagcttcagagaatttgtcacaaaagataatgttactggatcaatgaagggctattgcattgatgtctttactcaggcattggctttgcttccttatcctgttacatacaagtttataccatttgggggtggtaatgaaaatccacattatgacaaactcgtacaaatggttgaggataacgagtttgacgcagcaataggggatattgcaattacaatgagcaggactgtaactactgatttcacccagcccttcattgaatctggcttggttatcttggctccagttaaaaaacatattgttaattcctgggcattcttgcagccattcactcttcagatgtggtgtgttactggattattctttcttgttgtgggtgcagttgtttgggttcttgaacatcgaataaatgacgaattccgtggctcaccgcgagaacaaataattactattttctggttcagcttttcaaccttgttttttgcacacagagaaaataccatgagtaccttaggacgtggtgtcttgatcatatggctatttgttgttttaatcattcaatccagctatactgcaagtcttacttccatcctgactgttcaacaactcgatacttctataagaggaattgatgacctgaaaaatagtgatggtcctattggtttccaagttggttcttttgcagaagaatacatggtcagggagctgaacatctcacggtcgaggctgagagctcttggttctccagaagaatacgctgaagcgcttaagcatggccctaagagaggaggtgtcatggccattgtagatgagcgcccctacgttgaactgtttttgtcaacttattgcaagattgcagttgctggttcggatttcaccagcagaggatggggctttgcatttccaagagactcccctttgcaaattgacctatcgactgcgatcctgtcactgtcggagaacggggaactgcagaggatccatgacaaatggctcaagactagcgagtgctcagccgacaacaccgagtttgtcgactcggatcagctccgccttgagagcttctggggcctgttcctcatttgtggtatcgcatgtgtcatcgcgctgctcatctactttttcaccaccgtacgcaaattcctcaggcatgaacctccagaagatccaacacctcgtccaggcggatcaacaactcttccagacgaacgaacacccccaaagaacggacaagagaaatgcaactgcagaaatttcatctcatttcttgatcacaaggagccaccaaagaagaagcggtccttgagtttgacgccgacaacgccattgagcaactttactgcccttgaaatagaaggacctgtgaggacagtcaggaatggtagtgtcgttgacatatag</cdnaseq>

Protein Sequence

<aaseq>MKIGLLMLLVLFLVMSPDGIRRSLAARPSIVNIGAILRFNSTIG GVSMIAIQAALEDINSDSTILNGTTLKVDMRDTNCDDGFLGMVEALQFMETDVIAIIG PQCSTIAHIVSYVANELRVPLMSFASDATLSSIQFPFFVRTAPSDLYQMDAVAAIVDY YRWKIVTAIYIDDDYGRNGIATLDDALTQRRCKISYKIAFPANARKSDLINLLVSVSY MESRVIILHTGAGPGLKIFSLANQLSMMGNGYVWIATDWLSAYLDANSSVPDETMYGM QGVLTLRPHIPESKMKSNLISKWSRLSKKYSYSYLRTSSYAFYVYDSVWAVARALDAF FDDGGKISFSNDSRLRDETGGTLHLEAMSIFDMGNNLLEKIRKANFTGVSGQVQFDAT GDLIHPAYDVINIIGNGMRTVGYWSNYSSLLSTVLPEVLYSEPPNNSLANQHLYDVIW PGQTAQTPRGWVFPSNAKELKIGVPNRFSFREFVTKDNVTGSMKGYCIDVFTQALALL PYPVTYKFIPFGGGNENPHYDKLVQMVEDNEFDAAIGDIAITMSRTVTTDFTQPFIES GLVILAPVKKHIVNSWAFLQPFTLQMWCVTGLFFLVVGAVVWVLEHRINDEFRGSPRE QIITIFWFSFSTLFFAHRENTMSTLGRGVLIIWLFVVLIIQSSYTASLTSILTVQQLD TSIRGIDDLKNSDGPIGFQVGSFAEEYMVRELNISRSRLRALGSPEEYAEALKHGPKR GGVMAIVDERPYVELFLSTYCKIAVAGSDFTSRGWGFAFPRDSPLQIDLSTAILSLSE NGELQRIHDKWLKTSECSADNTEFVDSDQLRLESFWGLFLICGIACVIALLIYFFTTV RKFLRHEPPEDPTPRPGGSTTLPDERTPPKNGQEKCNCRNFISFLDHKEPPKKKRSLS LTPTTPLSNFTALEIEGPVRTVRNGSVVDI</aaseq>

Gene Sequence

<dnaseqindica>1332..1596#1695..3043#3125..3402#3738..3769#3858..4264#4414..4917#accagaaaatgtgctgaaaatgagcttcgcgaaagctcacgcggtcttcttcagagagaggggtccctactccgtgtcgagctgagcagcagcagcagcagcagcccgcgagcccaaagatttcctctttcgtgggggagacacgccaaatccaatccgtaagttgattttctctctctcagattgatggatgctaccgcttagcaaagaatgtcgcatctttgtaccgtttctcgttcttggctccgaatctcatctttttcctcctgccaatgcgtacgcattcgtgttttttttcttgggctagttcccctcccctactggttgttgattgatcctaagtaataatggttcctgacattcttggggatatgtccatgcgttgagttcttgtaggttcaatccgttcatttttcagtggtagataacaagcacaaaacacatgaaaggttgagttttttttttcctgtttaggtcgtttggttacttgccattccagacttccactcactgtttcctgcaggtctaaaagtctcaggggagcattgtgcagtagtatgtttttttttaaggaaatgcagtagtatgtttgttttgtttgtttattgatgtctgattgacacaggggatagaataaatacttccatgggttcttatgcctagtgcaatggaaggattagcactgcaactttcgttcttttcacagacaaagtgtatggaatatgtggagtccacaactccacattgcttcttggtttgttgtgcagagtccgtatgaacaaagctggcaccgaatcacgcttgcccaatgaaactcggatgtgccttacctttcttttagcctgatgctcatcactgttgtgatttgttctgggatcgcccttctgtgaagaaatcggatagcttgcatcagtcattacattgtgtaagcaatagcataccagaaatgagtgtttccataattcgattcgtcatgtatcgagtttaatcatctgcatttgttatgtcacgttgtttttcttgcaatatatgggatgaatctgtcgattttgttctcataattacttccttcacattggcatctgttttgtcactttggtgtgttccttttctttgttatttttttcctttcaacttttgtactgaagattcaaatgttgatagaaatttacatggggtatgctagtttcggaagaaaaaaaaatgatttacgcgttgttatctcaatgacaaatactctctatcttctttgtggcaggagttctccaactcatcaataatctgcaagatgtgaataagtctcaagtagactttgcaccatttgagacacaatgaagataggtctgctcatgttgcttgttctcttcctggtcatgtcccctgatgggatccgcaggagcttagccgcgaggccttctattgtgaatattggggccattcttcgatttaactccaccattggaggtgtttcgatgattgctatccaggcagccttggaggatattaattctgattcaacaattctaaatggaacaactttaaaagttgacatgagggatacaaattgtgatgatggtttccttgggatggttgaaggtaggctagctgttacactcctttcattttgtttgcattgttaaatagaatgtgctttgtgttgtggagttctgatgatactacattctttgtatcagctttgcagttcatggagactgatgtgattgcaattattggcccacagtgctcaacaattgcacatatcgtttcatatgtagcaaatgagctccgagtccctcttatgtcctttgcatctgatgcaactttgtcatcaattcagttcccattctttgttcgaactgctcccagtgatctctatcaaatggatgctgtagctgcaatagttgactactaccgttggaagatagtgactgctatatatattgatgatgattatggccgaaatggaatagccacattggatgatgcacttactcaaaggcgctgcaaaatctcctacaagattgcatttcctgcaaatgctagaaagagcgacctcataaatttattggtcagcgttagttatatggagtctcgtgttatcatcctccatactggtgctggacctggactcaagattttctctctggcgaaccaactaagcatgatgggcaatggctatgtatggattgcaactgattggctttctgcttatctcgatgctaattcatcggttcctgatgagactatgtatggcatgcaaggagttctcactttacgcccacacattcctgaatcaaagatgaagagtaatttgatctccaagtggagcaggttaagcaagaagtacagttatagttatctccgcacaagttcatatgctttttatgtttatgatagtgtatgggcagtagctcgggctttggatgctttctttgatgatggtgggaagatttccttttcaaatgattcaaggctgcgtgatgaaactggaggtactcttcaccttgaagcaatgagtatttttgatatgggaaataacttgttggagaagattagaaaggcaaacttcactggggtgtctgggcaagtgcaatttgatgctactggtgacctcattcatcctgcttatgatgtcataaatataattggaaatggcatgcggacagttggctattggtcaaattattctagcttgctgtcgactgtccttccggaggttctctattcagagcctcctaacaattctctagctaatcaacatctatatgatgttatttggcctgggcagactgcacaaacgcctcgaggctgggtttttccttctaatgctaaggagttgaaaattggtgtccccaacagatttagcttcagagaatttgtcacaaaagataatgttactggatcaatgaagggctattgcattgatgtctttactcaggcattggctttgcttccttatcctgttacatacaagtttataccatttgggggtggtaatgaaaatccacattatgacaaactcgtacaaatggttgaggataacgtaagtatggacaagtgatgcttttcttcttctgcactttctatcacaggtgatattgatcagaattttcctatcctgcaggagtttgacgcagcaataggggatattgcaattacaatgagcaggactgtaactactgatttcacccagcccttcattgaatctggcttggttatcttggctccagttaaaaaacatattgttaattcctgggcattcttgcagccattcactcttcagatgtggtgtgttactggattattctttcttgttgtgggtgcagttgtttgggttcttgaacatcgaataaatgacgaattccgtggctcaccgcgagaacaaataattactattttctggtatggagctgatttgaacattttgtatcatctgcccacttgtcaatcaatctacagatattaagatacaaaaaaaccttttttgcaatacattgcacatagctagcaccttaaaaatcctgtttctatatttctacacagccaagtcctccaatttgcatgtgtaaatgaggtattgatgagcaatgcacctaaaccttgttttacgtattctctgcatatgcagaatctattgcatatgatagtatgatgcattacttgcacattgcttgcttgatggtgtgcatctttgctaccaaatttgtgaccttaatctcaatttttatattctacaggttcagcttttcaaccttgttttttgcacacagtgagtaaaccaaccttctattatatgttttttggggcaaaagtaatatttcagtctgacacattgctttcatctctatctgctccaggagaaaataccatgagtaccttaggacgtggtgtcttgatcatatggctatttgttgttttaatcattcaatccagctatactgcaagtcttacttccatcctgactgttcaacaactcgatacttctataagaggaattgatgacctgaaaaatagtgatggtcctattggtttccaagttggttcttttgcagaagaatacatggtcagggagctgaacatctcacggtcgaggctgagagctcttggttctccagaagaatacgctgaagcgcttaagcatggccctaagagaggaggtgtcatggccattgtagatgagcgcccctacgttgaactgtttttgtcaacttattgcaagattgcagttgctggttcggatttcaccagcagaggatggggctttgtaagtacatttaaacttgattttctttaacatggattagaaaaacaaagagaaaacaactagacacaaaatataacaacttagcttatgaagtactacttgtttctcatcattaaaacatagtgcttaataaagttcactcttatcaggcatttccaagagactcccctttgcaaattgacctatcgactgcgatcctgtcactgtcggagaacggggaactgcagaggatccatgacaaatggctcaagactagcgagtgctcagccgacaacaccgagtttgtcgactcggatcagctccgccttgagagcttctggggcctgttcctcatttgtggtatcgcatgtgtcatcgcgctgctcatctactttttcaccaccgtacgcaaattcctcaggcatgaacctccagaagatccaacacctcgtccaggcggatcaacaactcttccagacgaacgaacacccccaaagaacggacaagagaaatgcaactgcagaaatttcatctcatttcttgatcacaaggagccaccaaagaagaagcggtccttgagtttgacgccgacaacgccattgagcaactttactgcccttgaaatagaaggacctgtgaggacagtcaggaatggtagtgtcgttgacatatagaactagtgtgtgtaaaaagctgagatgttatatattttggatctgagatatgccatctttcggtcaatctcctcaattttagttgagagaaaatataatcagaggctgcataagatgctatctgtagatttcaagcaaatccggtgatgggaaaaattcatttgaggccagtttggcaactgaaaaactgtatagaaagttattcttgtccttgatggtattttgaatggaggaaatatatacgtctgtttgatt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0117500, RefSeq:Os02g0117500