Os02g0118400

From RiceWiki
Revision as of 02:06, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0118400| Description = Similar to CMP-N-acetylneuraminate-beta- galactosamide-alpha-2,6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside alp...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0118400

Description

Similar to CMP-N-acetylneuraminate-beta- galactosamide-alpha-2,6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside alpha-2,6-sialyltransferase) (Alpha 2,6-ST) (Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75)

Version

NM_001052229.1 GI:115443828 GeneID:4328096

Length

3995 bp

Definition

Oryza sativa Japonica Group Os02g0118400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:961549..965543

Sequence Coding Region

961625..961709,961796..961869,962236..962325,963087..963164,963348..963448
,963540..963732,963810..963900,963970..964034,964126..964280
,964363..964444,964569..964678,964885..965080

Expression

GEO Profiles:Os02g0118400

Genome Context

<gbrowseImage1> name=NC_008395:961549..965543 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:961549..965543 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcgggtgctccccctcgcgctcgccgccgccatcttctccggcgtcaccgccatcctcgtctacctctccggcctctcctcatatggcggcgctagggtttccgatgcggacttggcggcgctgggcgcgctgcagagcggcttcagcaagtgtgtggatgcaaatggtctagggctgaaagcaattccaggagaggattactgtcgagttgtaatacagtatccaagcgacacagattctaagtggaaagatccaaaaactggagaacctgaaggtttatcatttgagttcaatctctgtgaagctgtggcttcatgggagcaggttcgcaatagcacaacaatacttacaaaggagtacatcgatgcgttgccaaatggttgggaggagtatgcatggcgcaggatcaataaaggaatccatctgaacaagtgccagaacaggactctttgcatggaaaaactttcattagttcttcctgagacaccaccatatgtacctcggcaatttggtagatgtgctgtagttggaaactctggggatcttcttaaaaccaaatttggggatgaaattgattcttatgatgtcgttattagagagaacggtgcacccatccagaattatacagaatatgttgggacaaagagtacatttcgacttcttaacagaggatctgcaaaggctctagataaagttgttgagttagatgaaacaaaaaaggaagcccttatcgttaagacaacaatacatgatatcatgaaccaaatgatccgggaaattccaataaccaatccagtatacctcatgctaggcacatcgtttggttcctctgctaaaggaactgggcttaaggctcttgaattcgctctgtctatgtgtgacagtgtcgacatgtatggatttacagttgacccaggatacaaggaatggaccaggtacttttcggagtccagaaagggacacactccattacatgggagagcatattatcaaatgatggaatgtcttggtcttgtaaaaatccactcacctatgcgaggtgatcctggcagagtagtaaagtgggctccaaccaaggacaccattgaagctgctagggttgcttctgagaaactgttgaagagacctggggctggaagcgagggccctttgagctcttgcaccatgataaagaagcgcgagaaagggaagacaccaaaaagatctgttgtccgccatgctgccttgaagcatctggagtacatgagaggtgccaccaggtaccctctggagcggaatgctgggggtggttacctctgcatgatcaacgaaagatag</cdnaseq>

Protein Sequence

<aaseq>MRVLPLALAAAIFSGVTAILVYLSGLSSYGGARVSDADLAALGA LQSGFSKCVDANGLGLKAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFEFNLCE AVASWEQVRNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVL PETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKST FRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIREIPITNPVYLMLGTSFG SSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMM ECLGLVKIHSPMRGDPGRVVKWAPTKDTIEAARVASEKLLKRPGAGSEGPLSSCTMIK KREKGKTPKRSVVRHAALKHLEYMRGATRYPLERNAGGGYLCMINER</aaseq>

Gene Sequence

<dnaseqindica>77..161#248..321#688..777#1539..1616#1800..1900#1992..2184#2262..2352#2422..2486#2578..2732#2815..2896#3021..3130#3337..3532#ctctcacactcgactccggcgagagcacgggggccaaagccggcagagcgcggctagggcttcggctgctccggccatgcgggtgctccccctcgcgctcgccgccgccatcttctccggcgtcaccgccatcctcgtctacctctccggcctctcctcatgtaatgcgcgcgccttttttcttctgcttttggctttgcgtgtgtcgattctgaggtgggatggatgcgtttgtgcgtgcgtgcagatggcggcgctagggtttccgatgcggacttggcggcgctgggcgcgctgcagagcggcttcagcaagtgtgtggtacggtttcctgatctgtctccgctgttaattgatcctgttcactgtacgggcaattgggattcagttgccttgtaattgtgtgcaattagatgctacattgtgagatttggggccattagatttccacactcatggagaatcggcgtggtgattagttattgcttcgtaaattcttgatttatcgtggtaattgtttactcaaaggcatagtaattcagtagactgtcctggtatgtactttgttgtatcgatagtatcctaatatacattcacgaaggaaatttgtagtgtattcttgtttgtggtgacttgatgttcggtatataaagatcattaatgtgtactcgtgctaaaaacaatcaggatgcaaatggtctagggctgaaagcaattccaggagaggattactgtcgagttgtaatacagtatccaagcgacacagattctaagtgggtaagtgcacatgtgctgtgtaatttccttctggatgcaggccttcccatttcaaatgtagtcagctcctgacatagtttgcaaagcctcttttaattcttgctctgtacttacatcgcatcctaccttatgcttctgaaaattgccactagcgtgaacagtactcattgcatactcgtgccaccttttgtgatgcgtagggatggcaatgggtcgggtcgggcatgggtagagcaaaaccatgcctgacccgatgcccgacattgccagcccaaaccctacccactagaggtagcgggcaaaactccgtgcccggcgggcgcgggtatatctggcgggtacccaatgaatctcacatgaataataacttgaaagatatgtaatttaacaaagagaaataaaatcaataatttaccaaattatcggttatcaacaataatttgaattacatcataacttagtatcaattagcatcacaaatgaaccgagagaaatggtataagaattaagaaatgagtcaaaattagctaatacatatgtatcggattgggcatggtttacccacgggtaaaaaatgaaacccacctattacccataacgtcttcgggtctcgggcgggcgtgcccatgggtaaaaagtcacacccacgcccgtacccatcgggtcgggtatccacggatacctggacccatgggtaaaattcccatccctagtgatgcgtgtgtttgtttttcttagttcttatgcactgatatttgcagaaagatccaaaaactggagaacctgaaggtttatcatttgagttcaatctctgtgaagctgtggcttcatgggagcaggttagcattcattcaactgacatatgtatgtgtttttttgcagatgcattgaagtttaatattatatgatataatgtaaaacatggcaatcctcagtatgtaaacactgtgtccagatatttgttagatcacagtattagctatttttatggacttatggtcactcagttgcttttttcctaggttcgcaatagcacaacaatacttacaaaggagtacatcgatgcgttgccaaatggttgggaggagtatgcatggcgcaggatcaataaaggaatccatctgtgggtacacatacttgcagtttcatcaagatttgcagcatgattaactccacaaacagattattgagcatgtttagtcttgaaattgcaggaacaagtgccagaacaggactctttgcatggaaaaactttcattagttcttcctgagacaccaccatatgtacctcggcaatttggtagatgtgctgtagttggaaactctggggatcttcttaaaaccaaatttggggatgaaattgattcttatgatgtcgttattagagagaacggtgcacccatccaggtttctttaagatacttatgtttgctgctcttgtgtcgttccactcgaacataaactgacttctatttttattgaagaattatacagaatatgttgggacaaagagtacatttcgacttcttaacagaggatctgcaaaggctctagataaagttgttgagttagatggtaggtctgtcagccacctattttcccatttggtgagatactaaggcatgctaatttttatggttgcagaaacaaaaaaggaagcccttatcgttaagacaacaatacatgatatcatgaaccaaatgatccgggtaatttagctgtcctatttaagaaaaatacggtagcttgggtacatattctgtgttctcttacctgcctgctggaattcttgctatgtaggaaattccaataaccaatccagtatacctcatgctaggcacatcgtttggttcctctgctaaaggaactgggcttaaggctcttgaattcgctctgtctatgtgtgacagtgtcgacatgtatggatttacagttgacccaggatacaaggaatggttggtgcgatcgatcttacgcactaaatatgatgtatgttgatgtgcagatctgcttacagttgatgtgatgatctttcaggaccaggtacttttcggagtccagaaagggacacactccattacatgggagagcatattatcaaatgatggaatgtcttggtgtgagtttctcatttcccctaatccgaactaatcaaaccattcctacatggaaggattattacttagccacactgttatagtgtgaagagataacttactgtttttaaatataaacatgtgcagcttgtaaaaatccactcacctatgcgaggtgatcctggcagagtagtaaagtgggctccaaccaaggacaccattgaagctgctagggttgcttctgagaaactgttgaagtaagttttgtggcctacctttatttagtatggttcttgcttccattcgtcaatcactccatggcaaccccacttagatacttagttactagatattgattttcatctgcttggttctggtgcttaaattaactaaattaatcagatatgtcattatgccacatgttgtataacttgaaacttcgtcgttgcaaaatgcactataggagacctggggctggaagcgagggccctttgagctcttgcaccatgataaagaagcgcgagaaagggaagacaccaaaaagatctgttgtccgccatgctgccttgaagcatctggagtacatgagaggtgccaccaggtaccctctggagcggaatgctgggggtggttacctctgcatgatcaacgaaagatagacatatagctgcccatattctaggagtggctgaattcatggtaccatgaagcagaacactgtaccccgatgaatgaatcctacacggataaactattttgagggaacattggtgctcatttttgtacagagccggcagttgagatgattttacgcatgagtagtcacaatgtgttgtaacttacattgaaactacacaagtgttgtgtgatggaatgaacagatagcggggcagtttgctgcgcaatgcatcgggtcgccaaatttgtcacctgtaactagaagaaatcttaactatgtacatggagcctgtaattcgtttggcagtagacatgcactatttgattggcatgatggcatcacattctggaacttactatgtcttaacttgcatagatatgttgaccaacaacttgaggcaaatcattagtatacaaatgatctctctgatactatttccaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0118400, RefSeq:Os02g0118400