Os09g0268600

From RiceWiki
Revision as of 07:19, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0268600| Description = Zinc finger, SWIM-type domain containing protein| Version = NM_001069261.1 GI:115478261 GeneID:4346569| Length = 397...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0268600

Description

Zinc finger, SWIM-type domain containing protein

Version

NM_001069261.1 GI:115478261 GeneID:4346569

Length

3973 bp

Definition

Oryza sativa Japonica Group Os09g0268600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:5715970..5719942

Sequence Coding Region

5716069..5716411,5716493..5717445,5717524..5717550

Expression

GEO Profiles:Os09g0268600

Genome Context

<gbrowseImage1> name=NC_008402:5715970..5719942 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:5715970..5719942 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggatggacaatacagacagaaggggctcatgaatgcagtggctagagttttcccagactgtgagcatagatattgcaaaagacatctcttggcaaacatggcaacagctggttatagaggagagaaatacaagagctttgttgattctgcagtctatgcttacactgaatatgattacaacagagcaatggatgcattaaaggcattcaatgccaaagcatggaaatggcttaattatcttggcaaagaacatttcagtagacatgctttctcctctaggagcaggacagacctagttgtgaacaatcttagtgaggtgttcaacaactacattattgagcttagggacaaacccatcgtaaccatgcttgacaaaattagacaaaaactaatggtcagggcaaatcaaaagagagacggaggtcaacaagcaatgtgggagatcaccccggtagtagtcgggaaattggaggtagagaagaaatatgctaggtactgcaatgcttatcaatcaggtgttggtttgtgggagattttaggatcggagaggcagtatgaggtcaacttattttctagaacatgtggatgtaacaaatggcaacttaccggaataccttgtaagcatgccgtgacggcaatatttgcagcaaaagagaggcctgaggattatgtcgatgagcactttaggaaggaagcttaccttcgagcatatgcgccagttatctatccagtcccaggagagcatgattggacaacaactgattcacctgacattgatcctcctaagttcacaaagcaaccaggaagaccaaagaagagtaggaggaggggtcaagatgaagctcccaaggtaaccggcagagcaagaatgacaaccacaacatgtactaattgtgaagggatgtaccacaactacacgacttgcaaaaaaaagttgaggcccgatctgcagataagactcgatgctctcaaggctaaaaggtcgcatgagccagaaaaccaagctcaaagatcacatgagccaagtagtcaagatcacatcaataatcatcaaccaagttcatatcagccaatcaatgaagggggaacaagcaggggaaggaaacttgattcaaggagggggtgtgctataggaagcaccatgaaggaaaatgctagaggaactacagacaggggaagagaaaatgctagagaaactatagtcaggggaagaggaaatgctagaggaactatagtcaagggaagaggaaatgctagaggaaccacagttaggggaagaggtctagggcacacttccctcaaccaatggatcccatag</cdnaseq>

Protein Sequence

<aaseq>MEDGQYRQKGLMNAVARVFPDCEHRYCKRHLLANMATAGYRGEK YKSFVDSAVYAYTEYDYNRAMDALKAFNAKAWKWLNYLGKEHFSRHAFSSRSRTDLVV NNLSEVFNNYIIELRDKPIVTMLDKIRQKLMVRANQKRDGGQQAMWEITPVVVGKLEV EKKYARYCNAYQSGVGLWEILGSERQYEVNLFSRTCGCNKWQLTGIPCKHAVTAIFAA KERPEDYVDEHFRKEAYLRAYAPVIYPVPGEHDWTTTDSPDIDPPKFTKQPGRPKKSR RRGQDEAPKVTGRARMTTTTCTNCEGMYHNYTTCKKKLRPDLQIRLDALKAKRSHEPE NQAQRSHEPSSQDHINNHQPSSYQPINEGGTSRGRKLDSRRGCAIGSTMKENARGTTD RGRENARETIVRGRGNARGTIVKGRGNARGTTVRGRGLGHTSLNQWIP</aaseq>

Gene Sequence

<dnaseqindica>3532..3874#2498..3450#2393..2419#acgatctcacgattctgcctcctcatctctgtcgtttcggaggacgacggggtgttgacgccagcaccggcgccggccgctgagttcatctttgccaagtgagtaagttccatcccattagtcctgctattctgtgctactcagtttccaatctcctctcttttgttgtgtcaccatccacgctcctgtcttgtgttatggaatttggttaaaagtcaaaatgaccacaaaatcgatttgatgctcatgactatataattggggatcccatatagctgaaccgaatttacatactgatagtaagacaataataattttctaaacaatttagacatgttctactaatcagttatataatccatgtttatagtggactggtacagcaacccaagagataccatttactcataggttattaaactaatccttttagacctcacaatatgtatatgtgttaacaaaatccttgtgtctacatcagtaaattgaattatatgtacatattattgtttatctccaagctgaatttaggtctgaaagttatgttctaattatcagaatggctgaagaagtttggacattgcggtttttcaagcatgatcgtggtccaggggcaatggttgttgaggagccaatggatcgagaccttgtctgctttttcaatatggttgagataatagagaagcttgggtaccagaaaagtgatgaaatattttttgcccaacctggatgttactgccgcacatcaatgacaagaatcaagggtgacagcaatgtcatggacatgcttagggaaaacgatagcataaataaagttgacatacatatttttgacagaaaagttgcctcaagcagtgcactagaagaggatgttgttgcagatgccactgataatgtggaggcaaataaaaatagagatttagaagaaaaaggatctgaacagttgaagaacagtgatgaagacttgtggatggaccagggtgataatacatttctctttgttgatggtaaagaagatgaagactcagaatatagcgatgatgattttgaccttgatcaagagaagattgactatattcataagctacaggagataaagagacaacgagctgaccctaggaatcgttgtgaaggtgatactgatgatgaggatttgtttgtccctgttgttgattggagtgctctatctgttgttccggtggactctaaggatgtggcagaggcaatatcaaacaaggctcaatgtggtgttgtcaatattcaagatggtacagatgttgcatcatcaaatttgcaaaagaagaatagcactaaggcgagtaggaatgtcaaaggacaaaatgatgtggggtcttctcaggttgaggaaactgttttttctgatcctccaagtgaggatggtggggctagtgctgttgaatatgaaagtagcgatgatggtcaaaaacttgatgcacaagctaagaggaggaagaggagaagaagagagagtagggtggttaacaggaggatttactttgatgaagataacattatggacaccacacaattacaggaggctatgtgttttaccaatgtcgaccaatatagaagggctttaaaatcctatcacattgtccaaggaagagactacagatacacaagaaatgagccccgtagggtcaatgttaaatgcaaagaagaaaattgtccattcatcatgagggggtctcgaattgctagagagcacacttttatgctgagggagatgatacctcatacatgtgggacaacgagagcgaattcaaggttgaatagcacttggttgagttataaatacctcgaaaattttagaagtgaccctgattggaaggttagtgcgttacaagatcagtgcatgagagaattaggtactgatgtttctaagaccatggcatacagggctaagagaaaggcaggagaaaaagttcttggcaatcataaaaaacaatacatgagaattagagattacctgcaaactgtcattgataagaacccagggagcacagcagttgtgtcaactgtggatagaatagctctaggaatgaatcctagattttatggtctcttcatctgcttgaatgcccagagacagggatttctcgatggttgtaggccattcataagtaagttttatcatctttttttagtttttctgagtcatgtccataattctaagtctacatatgaatggcaggcattgatgggtgctttgtaaagctcagtaatggagcccaagtgctagcagctaccggtagggatggcaaaaataacctattcccaatagcatttggcgttgttggaaaggaagacacaaaaaactggaattggtttcttgagaggttggagacagccatcggtagaggagaagcgcatggaggatggacaatacagacagaaggtattacctatgtgttctctaaatgctggtaacttgtataactagtacttatattatgtcacaatgggtgcaatgtaggggctcatgaatgcagtggctagagttttcccagactgtgagcatagatattgcaaaagacatctcttggcaaacatggcaacagctggttatagaggagagaaatacaagagctttgttgattctgcagtctatgcttacactgaatatgattacaacagagcaatggatgcattaaaggcattcaatgccaaagcatggaaatggcttaattatcttggcaaagaacatttcagtagacatgctttctcctctaggagcaggacagacctagttgtgaacaatcttagtgaggtgttcaacaactacattattgagcttagggacaaacccatcgtaaccatgcttgacaaaattagacaaaaactaatggtcagggcaaatcaaaagagagacggaggtcaacaagcaatgtgggagatcaccccggtagtagtcgggaaattggaggtagagaagaaatatgctaggtactgcaatgcttatcaatcaggtgttggtttgtgggagattttaggatcggagaggcagtatgaggtcaacttattttctagaacatgtggatgtaacaaatggcaacttaccggaataccttgtaagcatgccgtgacggcaatatttgcagcaaaagagaggcctgaggattatgtcgatgagcactttaggaaggaagcttaccttcgagcatatgcgccagttatctatccagtcccaggagagcatgattggacaacaactgattcacctgacattgatcctcctaagttcacaaagcaaccaggaagaccaaagaagagtaggaggaggggtcaagatgaagctcccaaggtaaccggcagagcaagaatgacaaccacaacatgtactaattgtgaagggatgtaccacaactacacgacttgcaaaaaaaagttgaggcccgatctgcagataagactcgatgctctcaaggcaatactaaatttctccttttatgatttagttcaatattactccattttgcaatgttgtaatgtttgtttttttctataggctaaaaggtcgcatgagccagaaaaccaagctcaaagatcacatgagccaagtagtcaagatcacatcaataatcatcaaccaagttcatatcagccaatcaatgaagggggaacaagcaggggaaggaaacttgattcaaggagggggtgtgctataggaagcaccatgaaggaaaatgctagaggaactacagacaggggaagagaaaatgctagagaaactatagtcaggggaagaggaaatgctagaggaactatagtcaagggaagaggaaatgctagaggaaccacagttaggggaagaggtctagggcacacttccctcaaccaatggatcccatagagaattcatccatgtgttcctcagtcgttaattatctttatttagttgttaccaaggattttattatgtgacttgttttctggtcaatgatcacctttc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0268600, RefSeq:Os09g0268600