Os02g0175400

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Revision as of 02:14, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0175400| Description = Similar to Vacuolar H(+)-ATPase subunit A (Fragment)| Version = NM_001052589.1 GI:115444548 GeneID:4328470| Length =...")
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Gene Name

Os02g0175400

Description

Similar to Vacuolar H(+)-ATPase subunit A (Fragment)

Version

NM_001052589.1 GI:115444548 GeneID:4328470

Length

7361 bp

Definition

Oryza sativa Japonica Group Os02g0175400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:4120170..4127530

Sequence Coding Region

4120268..4120339,4121462..4121588,4121715..4121770,4121856..4121912,4122017..4122128
,4122247..4122284,4122412..4122513,4122619..4122675,4122755..4122826
,4122992..4123093,4123210..4123405,4123988..4124094,4124497..4124691
,4124771..4124857,4125599..4125703,4126067..4126164,4126250..4126328
,4126912..4127000,4127086..4127200

Expression

GEO Profiles:Os02g0175400

Genome Context

<gbrowseImage1> name=NC_008395:4120170..4127530 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:4120170..4127530 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttcggcgaccgcatcaccaccttcgaggactccgagaaggagagcgagtacggctacgtccgcaaggtctctggacctgtggttgtggctgatggaatgggaggtgctgccatgtatgaactcgtccgtgttgggcacgataatcttattggagaaattattcgtcttgagggggattcagctacaattcaagtttatgaggaaactgctggactgatggttaacgaccctgttttgagaacacgaaagcccctgtcggttgagttgggacctggtattcttgggaacatttttgatgggatccagcgccctctgaaaactattgctattaaatctggagatgtgtacattccgcgtggtgtctcagttcctgcccttgacaaagatgctttgtggcattttaagccagaaaaactaggtgttggagatattatcacgggtggagatctatatgctattgtcaatgaaaatactttgatgcaacacaaggttgctcttccacctggcgctatggggaaaataagttacatcgccccagctggtcaatatagcctgcaggatacagtgctagaattggaatttcagggtatcaaaaaggaatttaccatgctccagacatggcctgtgcgttcaccaaggcctgttatggaaaaacttgctgcagatacacctcttcttacaggacagcgtgtacttgatgcattgttcccctcagttcttggaggaacatgtgccattcctggagcttttggttgtggaaagactgtcattagtcaggcactttccaagtattccaactcccaagctgtggtttatgtcggatgtggcgaaagaggaaatgagatggctgaggttctcatggactttccccaattgacaatgacgacagaggatggacgtgaagagtctgtgatgaagagaacaacactggtggctaacacatccaacatgcctgtcgctgctcgtgaagcttccatttatacaggaattacgatagctgagtattaccgtgacatgggttacaatgtcagcatgatggctgattccacctcacgatgggctgaggcattgcgtgaaatttctgggcgtttggctgaaatgcctgcagatagtggttaccctgcttatttggctgcaagactggcatctttctatgaacgtgctggtaaagtaaggtgtcttggaagtccaaaacgggacggaagtgttacaattgtaggggctgtctctccacctggtggtgatttttcagatcctgttacctctgcaacccttagtattgttcaggtcttctggggattagataaaaagcttgcccagaggaagcatttcccatcagtgaattggctcatatcttattcgaaatattctaaggcgcttgagccgcactatgagagggaagatccagatttcattgatattagaacaaaggcacgtgaggtgttgcagagggaagatgatttaaatgaaatagtgcagcttgttggtaaagacgcactggcagaatctgacaagattacactggagacagcaaaacttctgagagaagattatttggcacaaaatgcattcaccccatatgataagtattgcccattctacaaatctgtttggatgatgcgcaacattattcatttcaacacattggcaacccaggcggtggagcgggcagctggtgctgatggacagaagattacatacagtgtcataaagcatcgcatgggcgatctattctaccgcctagtgtcgcaaaaattcgaggatcccgcagagggcaaagaagttttgattgcgaaatttcagaagctgtacgatgaccttaccgccgggttccgcaatctagaagacgaagcacggtga</cdnaseq>

Protein Sequence

<aaseq>MAFGDRITTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELV RVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDG IQRPLKTIAIKSGDVYIPRGVSVPALDKDALWHFKPEKLGVGDIITGGDLYAIVNENT LMQHKVALPPGAMGKISYIAPAGQYSLQDTVLELEFQGIKKEFTMLQTWPVRSPRPVM EKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSQAVVYVG CGERGNEMAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGITI AEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGK VRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVN WLISYSKYSKALEPHYEREDPDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKI TLETAKLLREDYLAQNAFTPYDKYCPFYKSVWMMRNIIHFNTLATQAVERAAGADGQK ITYSVIKHRMGDLFYRLVSQKFEDPAEGKEVLIAKFQKLYDDLTAGFRNLEDEAR</aaseq>

Gene Sequence

<dnaseqindica>99..170#1293..1419#1546..1601#1687..1743#1848..1959#2078..2115#2243..2344#2450..2506#2586..2657#2823..2924#3041..3236#3819..3925#4328..4522#4602..4688#5430..5534#5898..5995#6081..6159#6743..6831#6917..7031#ttccctccccgaccagatcgcgacaccgccaccgccgatccgaaggtcggcgacgacgaccaccaccgccgccgccctcgtcctcgccgccggcggccatggcgttcggcgaccgcatcaccaccttcgaggactccgagaaggagagcgagtacggctacgtccgcaaggtccgtcaccccccctcctccccccctctccgctatactcctctgctcgcattgcttccaatgtagatcccaccgtgctcgttccgcgcgatcccgacggggcgcgggctctgtggcggcgggggcgtggtcggatcggggctgaattggcgccgagatttggttaggatgggatggggtggtggtggtgatggcgcggattgctttggggatctgtcgcgggcgggtggctagatagggccttcggatccagtctggcattggtggctagctcgcttggtcgggtggggttttgcggagagtccgtgttgctgcgcggctctgcttgagattcgcatgtggtgtggtgttctgatcgccagtccgtaccacgccatcatataatgatatgatcttttgttgcaggggtatcgctaatagtttaggttttactgtgaactcgtgactagagcggtgctcagatgtgttttgacaatttgactgatggatggcattgctattagcgtggttggatgtaaaaataaagttgttcgtttgttgtaatttaagaaccactagaagatacactggcttctattcctctcccggattatggattgaatgatgaaccctggacgaatagtgtgcactctcactctctgcttaatttcatcgaatttgctactccccttgttctaaaatataacaacctagtacaagatttggcatcacctagtaggagatctgtctagaatcgcagtactcggtgttatattttgggatggatggagtatctatttagaaacaatacacatcattccaaaaatgccatagttcaactgaccgtgccactcaacaatgaattgcgtcactcatgtatttctagataggtttatgctagatttagtgtttgttaatgctaaactgagttttctcatacttatgtgttggaatcgtagatcctattatgaactcagtgctatcgtatctgtctggtagaatatttagatgtcatcttatgctaagatctgcttcctagttatatgcgcactagtaattgccctttttcttttgtatgatggcatgtttagctcttaatttcattgtgttgatgaacattattgatcgaatgggttgttttaggtctctggacctgtggttgtggctgatggaatgggaggtgctgccatgtatgaactcgtccgtgttgggcacgataatcttattggagaaattattcgtcttgagggggattcagctacaattcaaggtgtggaacagctctttagtttctatctttaacagcatacagacacgagttctgatagcaattatatgcctgttgaaaccatagtcaatatctaacatcagaaatgttgttatttgtgtatcacagtttatgaggaaactgctggactgatggttaacgaccctgttttgagaacacgaaaggtgcttttttgtcatttattaaactgatctgtcaagcgtacttgtttttgcttgtttttaacacataaaggttatgcctgcacagcccctgtcggttgagttgggacctggtattcttgggaacatttttgatgggatccaggtacttcaagttgtgaatgtggagtaatttcatttattttttaagctccttgcactccttgtctgttaactcttgtcatgtcctttttcctatcgtgtttgcagcgccctctgaaaactattgctattaaatctggagatgtgtacattccgcgtggtgtctcagttcctgcccttgacaaagatgctttgtggcattttaagccagaaaaactaggtaaagtattttgtatacttcaggggggaggggggggggttaccttttgttatcctttttcatttagcatgcagtgcaaggcactctaaaatcatctcctattatcattatgctgcaggtgttggagatattatcacgggtggagatctatatgctgtaagttaccatgaattttgagtttcgtcttatatggttatcatgaacactatgcatcaagatagtagcttgagatctgtcatcattaatcatgtgcctttgctaaagttttctgactatatggcagattgtcaatgaaaatactttgatgcaacacaaggttgctcttccacctggcgctatggggaaaataagttacatcgccccagctggtcaatatagcctgcaggttagtggatgctatcagtatcactttatcccatgtcctattgatctgcatgcattctaactttgcttaaccttgtatggaaccctgcttttgctataaatgcaggatacagtgctagaattggaatttcagggtatcaaaaaggaatttaccatgctccaggtaaacaagttccatcttttatgaagataacatgtctgaggattaaagcattagtttaatctgttgtactgcactacagacatggcctgtgcgttcaccaaggcctgttatggaaaaacttgctgcagatacacctcttcttacaggacaggtttgtacagaacctaccatggttctcactcataataatatgtgcttttcctccccatttttattaaggtttctgtgttgaaccactaaatgctcaaagtactgttttccccctcttttttctactcaactaatctaattcttatatacttttaaacgatcccagcgtgtacttgatgcattgttcccctcagttcttggaggaacatgtgccattcctggagcttttggttgtggaaagactgtcattagtcaggcactttccaaggtgatcactatttttctattcctcattgccatgtagtatctatagaaactatactctctttttgttgccttgatcacatctttgtactgagatgaatagcctctcaaactctgcagtattccaactcccaagctgtggtttatgtcggatgtggcgaaagaggaaatgagatggctgaggttctcatggactttccccaattgacaatgacgacagaggatggacgtgaagagtctgtgatgaagagaacaacactggtggctaacacatccaacatgcctgtcgctgctcgtgaagcttccatttatacaggtaatggtgtattgctcctgattgattgctacattaagccataatagtgtctgatatccatatagtgtgccccactttgtcatatagtagttgttttgttttttagttgtcatatagttgtttagttttgtatggatcccagcaatatgatgttacatcaacctggacatgcctacttatttggtacgagtactagttaacatgtatccacgtttagaatcttcacaccgcacaacagtggctgaaagtacaacattgatgatatatgcatctttgtccctggtttatctgtgtataagagatgcagggcaaaatgaaatgtagatgcgcatttattcctgagacccacacttgtatattattgtgaaatatattataaaatcttgatgatgaaggcatttccctccccaactatattttcaattgttgctatccagttagattttttgtaacattggcttatctatatgtttaatttcctgttgctttggtcatttggactgctatatgtattttatggaccttaagttcatcaccaatgatctcattgtaaacaaaatcttatatgactttgccccccaggaattacgatagctgagtattaccgtgacatgggttacaatgtcagcatgatggctgattccacctcacgatgggctgaggcattgcgtgaaatttctgggcgtttggtacgttgtttttcttctgccatacttgccctcatttcctttttgtatttctcatcctagtgtactttaacttgcacaaagctctgtcctattctcattggaaagacaatcagcttccgatttcttaaacggtgtgccgacatatttacactagcagttattctttcattgtgttttcactagtagttatgatagcctatttacactaaagtagttatagaatcaatttacatcatttactgcaatattaccatgtatggctaaaaattgctaactgctaatatagcctttggaaatagaatacttaaaagttaagattgttataactcattcgtgttgattttttgaatatctattttatgttaatattctaatgggcaatgccacatttttgttatccaggctgaaatgcctgcagatagtggttaccctgcttatttggctgcaagactggcatctttctatgaacgtgctggtaaagtaaggtgtcttggaagtccaaaacgggacggaagtgttacaattgtaggggctgtctctccacctggtggtgatttttcagatcctgttacctctgcaacccttagtattgttcaggtaaggaagcagctaagtctgtcatgattaataatgtttatcgtttcagtgttgttaaaccacatgttcttgtttgtaggtcttctggggattagataaaaagcttgcccagaggaagcatttcccatcagtgaattggctcatatcttattcgaaatattctaaggtttgttctgacaagcaacttgcttaaatagtttattctcccctcagattccaactgtaagttgatttagacttgtgcacaaagattaagaaagtactaaaatgaatttgttgccattcatttattttcatgaaaatgcaagagaattgcgtttcatttcattaaggggaagaaaataaagtaattttttttgttgccattcatttatagttttatactattgaaaaaatggaacatttatttgtgagagctgtagcacttattttatttgacaagggcaaacatgaaagagttcactataagttgtttttacttttttctagtcaaacttaaaagtttgtagaaaaatatagcaacattttcaacacaaaacaaacatagtatcaaaatatattcaatgttacatttgattaaactaatttgatgttgtaacttgtaaatgttgctaattttttctataaacttggtcaaatgtaaagaaatttgactaggaaaaatgtcaaagcgacaaaatataaaacggagagaataggaaggagttgagtggccagaggaagtagacaacaggtctctagaataacagaactatacgagtttctatggttataatttgttctaattgtttttggtcttctaactcatttttttcaatgaaatgctaataagtttatatttgaacattttcctgttcgttcgcatttgctttgatgttatgtgacaatacaatgttttgtgttgcaggcgcttgagccgcactatgagagggaagatccagatttcattgatattagaacaaaggcacgtgaggtgttgcagagggaagatgatttaaatgaaatagtgcaggtactattttgagccttgtgaatatttactctcctggaattccacgatggtttgacctgtcttattgaagttaccttttctcatactgtcgtatccctcctggctgtaatgcttcttattaatctgcatcatgcaaatgtaacatcctatcagaagtgttcgcacatattacttgcctaccataagtgctttgtaccagtttcttggcatttgttcacttaatggtcctgctaatattttgaaaatgataataaacttgaccttagtacgtacgttatttttaaacaagctgtggcataagtaagatttgagcttttgttgttctttgtgtgatatttattgttgactctaccccacattcagcttgttggtaaagacgcactggcagaatctgacaagattacactggagacagcaaaacttctgagagaagattatttggcacaaaatgcattcaccccgtgagtgttaaacccatttgatagttctactaacctgtgtcataatccatattaactaattgatcaattctgttgcatgaaacagatatgataagtattgcccattctacaaatctgtttggatgatgcgcaacattattcatttcaacacattggcaacccaggtaaattctcttgttccaggaattcgataatttgccaattttctttagaaaaccaatcctagctgactagaaaatcatgccaaaactttccaataattgtgttctatcagctgtcactgatgctcgtgagcttatatttaaatcaatctgggtcacctagaggccccaaatcccaagatcatagagtggcgtgaaactgagacactggttcctgtttgatctagaatttctgatttctggaacaaaaagatagtagtatgagttggatttatatacggagttctaggttttggattactggcatagataggctctggatcgatttgtcacttgaatttaaataattgaatcctagcatgggcatcagcatggaacttcaacacttaaggtatcatttacattgaaaggtgaatgagtggagctaattgaagacaactgaactgattagaggcactgtttgttgtatgtcatataagttactcattgtttactcattactcaatataattacaaataggatattcccatacaaaagtagcataagtactattttaataatctgtatgcttttattgttttataggcggtggagcgggcagctggtgctgatggacagaagattacatacagtgtcataaagcatcgcatgggcgatctattctaccgcctagtgtacgcatttctaccctattttcaagtttctaacactcgctgtgtagattgcaatatgaccaatggtatttgttgcttgtcacaggtcgcaaaaattcgaggatcccgcagagggcaaagaagttttgattgcgaaatttcagaagctgtacgatgaccttaccgccgggttccgcaatctagaagacgaagcacggtgaataattattgtagattctgtgtaaacaataaggatatatcaccaaatgttctataaaaaaaacatggaagcattccatttgctgctaccgaggctctaggtcgagatcatgtagaaattttcctgcaactatacgcgccgtcgtcgttttgtcaggttttgatcccaagtgctcgatggacacgccattatttctactctatgtatcatttatttatcatcttcattcacatcattgtaataaacatgggcatgtttatagtcgaataaatacgatgtccatctgtttaaaagtcttcgttgaaggtcattcatctttatttgttcgttg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0175400, RefSeq:Os02g0175400