Os02g0179300

From RiceWiki
Revision as of 02:15, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0179300| Description = Similar to RAD23 protein, isoform II| Version = NM_001052618.1 GI:115444606 GeneID:4328500| Length = 4782 bp| Defin...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0179300

Description

Similar to RAD23 protein, isoform II

Version

NM_001052618.1 GI:115444606 GeneID:4328500

Length

4782 bp

Definition

Oryza sativa Japonica Group Os02g0179300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:4407988..4412769

Sequence Coding Region

4408229..4408294,4408935..4409096,4409756..4409794,4409870..4409937,4410024..4410068
,4410478..4410655,4410740..4410871,4410944..4411009,4411498..4411545
,4411654..4411763,4412044..4412125,4412232..4412345

Expression

GEO Profiles:Os02g0179300

Genome Context

<gbrowseImage1> name=NC_008395:4407988..4412769 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:4407988..4412769 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagctgacggtgaagaccctcaagggcacccagttcgagatccgggtgcagcccaacgacaccattatggctgtcaagaagatcattgaagagatacaaggaaaggatagctacccatggggccaacagttgctgattcacaatggcaaggttttgaaagatgaaagtacattggaagagaacaaagtcagtgaagttgggtttttagttgtcatgcttagtaagagtaaagcttctggttccagtggagctttaagttcactgacttcaagcacccctttgaccaggcaagaaactcctgcggatgcttcacgagcagctcctcaacccctagttgcacctacaagaacaccccagcccgaaaggccacctgcggaagccccttcaaacgcatatggtcaagcagcatcaaatctattgtcgggaagcaatcttgacactacgattaaccagctgatggaaatgggtggtggcagttgggacagagataaagtccaaagagctctacgtgcagcttataacaacccagagcgtgctgttgaatatctatattctggcattccaattacagcggaggttgctgttccagcaggtggtcaaggggcaaacacaaccgagccatcttctactagggaagccagtctgtctggaattccaaacgcatccccgttaaatcttttcccacagggcgatgcaaatgatggaggtggtgctggtggtggaacacttgagttccttagacataaccaacagtttcaggcgcttcgggaaatggttcatactaacccacaaatattgcagcctatgctccaggaactgagcaagaagaatcctcaacttctgaggttgattcaggagaaccatgatgagttccttcagttaataaatgagccctttgatggtgctgatggggacttcttagaccaacctgaccaggatgagatgccccattctatcaatgtcacacctgaagagcaagaggcgattggacggcttgaaggcatgggatttgacagagcacgtgtcatcgaagcattcttcgcctgtgacaggaacgagcaactcgcagcaaattaccttcttgaacatgctgctgatgaagattag</cdnaseq>

Protein Sequence

<aaseq>MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQ LLIHNGKVLKDESTLEENKVSEVGFLVVMLSKSKASGSSGALSSLTSSTPLTRQETPA DASRAAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLMEMGGGS WDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVPAGGQGANTTEPSSTREASLSG IPNASPLNLFPQGDANDGGGAGGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSK KNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLE GMGFDRARVIEAFFACDRNEQLAANYLLEHAADED</aaseq>

Gene Sequence

<dnaseqindica>242..307#948..1109#1769..1807#1883..1950#2037..2081#2491..2668#2753..2884#2957..3022#3511..3558#3667..3776#4057..4138#4245..4358#gcctcctcctcccctcccctccactccgcgagccgccacctcctccgccgccgacgacgacgacgacgccgcatccccaaccctagccgccgctcggcggtgctgcgacgtaggagcgggtctcctctctgcatgatccgttagggctaccgagccgatcgaccggcgggcctaaaaccctagccgagagaggctgcgggttgggtgggggtgggggcgtgctcgactctccggcggcgccatgaagctgacggtgaagaccctcaagggcacccagttcgagatccgggtgcagcccaacgacaccgtgagaaattttcccccctacgcccatttcgattttcttttccccgtctcgtgtgtagctttcgttagtggggagatggagaatttttgctagggtttccaccaatgtagatgcgaggtagccattgagtcctgctccgctagggtttcgtttcagcaagtatggctcacctcgttggagggctcgttgtttgctgttatttagttatttattattatatggtaatgtagtggatatgcctggatgatgatagtccctcggagctgtgttcgtgaggatggatggattaagctgcaggcttggagctatcgtctgctttggactcatagttttacagtgtgttcatgatgattcaggcgcagcaatgttagcaagtggttactgtccgaaaggagctatcgtctcctttgaaatattgaatgcatagcattgtactggctgattactggataaaagtaaaacttgtcaggtttcactgggggatgataattccatccaaaaccagtatttgaaaccctgggtgcaacaggggtttagatatttatttcttgtctgctacgtcttctataattatagcaaaaatggctctgctacatatataaccgttccaggatttttctgtttgtacactatggaacagattatggctgtcaagaagatcattgaagagatacaaggaaaggatagctacccatggggccaacagttgctgattcacaatggcaaggttttgaaagatgaaagtacattggaagagaacaaagtcagtgaagttgggtttttagttgtcatgcttagtaaggtaggccgcgtatgtgctgtatataatttaaatggtgatgttatttattacgcttcatttaattcttttctgactggatgctgggtgtaacggtgcagcaaacttagttgttaaggaaaacacgatgacgttccatatactccctccatcccataaaaaacaaacctagtacaagatgtgacacatccttcatattcatactactaggatgtgtcacatcccatagtaggtttgtttttatgggacggagggagttaatagcataaacagttaaacaataacttgcgagacgtaatcattttgtggatattcataaacgatgaatatgcctggctctggcctcatttaatgcatgttggttttctgataatctgacatgggcgaataaggaacatgattaatagtcctttccacgtagcagctatactatgggtagtttcttctatgccacagtaccaaacttaattgacacctgaatcgttcttatgcttctttctatgattaattttcatgacctgtcaacagtcgcttctctatctactggctttacagttaccattatctataatcacattatccgacatttcctctcatgcttgtactcttcttgtgttgctttggaagacatgattatttacttaatctctgattctctgcagagtaaagcttctggttccagtggagctttaagttcactggtaatactattactttttagatgtatatgcaaatgtttttttttttcatttactgactgcatgatccgttattagacttcaagcacccctttgaccaggcaagaaactcctgcggatgcttcacgagcagctcctcaacccctgtgagtgcactattgactttcttttttgcatcttccccattcatataaggtattactcactaggtggatgtattgtgctcttgcagagttgcacctacaagaacaccccagcccgaaaggccacctgcggagtatgtttccagtctgcaatcaatatttgtgctatgtccttttttgccactaatatccttgtttcgtgacgtggtcactccgaaggaaaattcctttctttaaatttgatagcacactcaaatcattcaacatttcatacattaccacatctgataaggttccattgtgaagactggcatacacgcatacgtgataagatgaactaataaattgtggtctgcgagagaggaggggaaaaaaacacacttgctagctatcagcaggaagttaggctttagtcctgatcaattttgggattctaatagctatggaagatagatctgaattggtcttatgaatatgggttccactgtttactttctaatgaaatatactttatatgcttgctaaaacttatttttattttagagccccttcaaacgcatatggtcaagcagcatcaaatctattgtcgggaagcaatcttgacactacgattaaccagctgatggaaatgggtggtggcagttgggacagagataaagtccaaagagctctacgtgcagcttataacaacccagagcgtgctgttgaatatctatattctgtatgttctgtttcctcctgtaaatgtttgttattcttttttttctaacgttaatagataatgtttgtttctcccaaacattagggcattccaattacagcggaggttgctgttccagcaggtggtcaaggggcaaacacaaccgagccatcttctactagggaagccagtctgtctggaattccaaacgcatccccgttaaatcttttcccacaggtttatatgctatcttggttattcattaccatcgcctactattgcatgtatttaacaattgaaatttagcagggcgatgcaaatgatggaggtggtgctggtggtggaacacttgagttccttagacataaccaacaggttgtcatcctctctgttttgccatataagattatttttgttttttgttcagtataattttcctgagcaaatatttggttttttaatatagtgtttcttgaatatataaattatgttgccattgtttgtctggtaccggataactaccttttagcttttcatagccagcaatggagccactgtatgcatgataagatgcttttgatgctgctagcattgtttctgatttattattgttattttgatagcataccctgtcatcttttgtgcttgaacagcgcaccaccctgtatggtgtgagcatcaacttagtgaaacttccatatcatgttttccttttttgagacaggacctaatgttcacatcattttggtaccctcatgcgtattcgagaaaaaaaagcatcattttggtatacctccattcagtataacgttgcgttgtttgaattgttgaagtataacaccgctatcttcactattttgcagtttcaggcgcttcgggaaatggttcatactaacccacaaatattgcaggtcatttatcttgtttgacatgtttacatgctatggattatcttgtatagcctgctatggcttattttgtatcacctgcctaatctttgtgctggtatcatgttatagcctatgctccaggaactgagcaagaagaatcctcaacttctgaggttgattcaggagaaccatgatgagttccttcagttaataaatgagccctttgatggtgctgatgggtatgaactgttcatctgcttgattcaattctggtttcatttgatttgttatagggttataggattcgttaatgcgaaatgaaaaaaaaatcaattataaacttgaaatgccattggtatgttctctgtgttgcttcagcacactcccataacttctttcaatggattttcctcggtgctacttgtacaatatggttacacctttttatggactttctgtggtagtacgtgtgcattactccggtattcatttgcactcgcctgcttcctgatgatacagggacttcttagaccaacctgaccaggatgagatgccccattctatcaatgtcacacctgaagagcaagaggcgattggacgggtatgtacaacatagttaactcacttattacctcttgttacagaagtatatacagtgtacataacattacataacaacaatgttttgaattattttcatgcttcagcttgaaggcatgggatttgacagagcacgtgtcatcgaagcattcttcgcctgtgacaggaacgagcaactcgcagcaaattaccttcttgaacatgctgctgatgaagattagatggaattatttaaacccggtgagaactcttgccatgtcctggccgactgtttccctgtctttggttcagtaggaaaccatgcactaacgattatgttttatttgtgggggccatgacagcttattctgtacacctgccctgcaatttatcagacttttgaagtttgcgggtgctttggatccaaattgaacaagctgagatggagctaacaccgcgttgcatcgatttatctcttgtacaatacttgctttatttaattgctggcttagcattcaaatacatggcttaacatttattcgagctgtctgagggacggatccttttgtccatccgtttttagccagaaatttcaatggatgtgaattgtgttgaccacattttctgtcctgtttgtgttattcaattcgtgatttctagagcagt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0179300, RefSeq:Os02g0179300