Os02g0198600

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Revision as of 02:18, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0198600| Description = Similar to DNA-damage inducible protein DDI1-like| Version = NM_001052744.1 GI:115444858 GeneID:4328632| Length = 46...")
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Gene Name

Os02g0198600

Description

Similar to DNA-damage inducible protein DDI1-like

Version

NM_001052744.1 GI:115444858 GeneID:4328632

Length

4663 bp

Definition

Oryza sativa Japonica Group Os02g0198600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:5524023..5528685

Sequence Coding Region

5524149..5524214,5524609..5524641,5524750..5524880,5525174..5525282,5525406..5525522
,5525896..5525961,5526314..5526376,5526459..5526503,5526690..5526751
,5526974..5527067,5527375..5527467,5527561..5527630,5527816..5527892
,5527976..5528033,5528135..5528166,5528245..5528376

Expression

GEO Profiles:Os02g0198600

Genome Context

<gbrowseImage1> name=NC_008395:5524023..5528685 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:5524023..5528685 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaggtcaccgtgatgaccgccgacgagcagattctcaccgtcgacgtcgaccccgacgaatctgtggagaatttgaaggcgcttcttgaggtggagactagtgtgcctttgcggcagcagcagcttcacttcaatggcagggagatacagaacacggataaacttagcaccgtcggagtccaggatggcgatcttgtgatgatggtgaaggttacctctaatgaaaggccatctcaggatattataagattaaaccctgatggatctgctgttgatcctcaagctttccgacaacatattcgaggtgattcacaacttatgggacaactccttcagaatgacccggcattagcacaagctattcttggtgatgacatcaatgagttgcaaaataccttgcggtcacgccatcaacaaagactagaactaaagcgcaagcaggaagaagagcttgctctaatgtatgctgatccttttgatgttgaagctcagaagaaaattgaagctgcaattcggcagaaaggtattgatgaaaactgggaggctgccttggagcacaaccctgaagcatttgctcgagtggttatgctgtatgtggacatggaagtcaatggtgtacctttgaaggcctttgttgacagtggagcacaatcaactatcatatcaaaaagctgtgccgaacgttgcgggttgcttaggctgcttgatcagcgatatagaggtgttgctattggcgttggtcaatcagagattcttggtagaatacatgtagccccaataaagattggccatgtcttctatccttgttcattcacagtattggatgctcccaatatggaatttctttttgggcttgatatgctgcggaaacatcagtgcataattgacttaaaagacaatgttcttagagtaggaggtggtgaggtttcagtgcccttcttacaagagaaagacatcccttcacatatacgtgatgaagagaaactatcgaagctagcatctctcagccaaggagctgctggagaatcgtcaacggcacgggagaagactcctgatgcgccaccacgagctcctactacaggtgctccagctgtgaatcctccgcaaccacagggaggaggagatttcgaagcaaaagtcacgaaactggtggaacttggattcgaccgggcatccgtaatccaagctctcaagttgttcaacgggaatgaggagcaggctgctgctttcttgtttggtggttag</cdnaseq>

Protein Sequence

<aaseq>MKVTVMTADEQILTVDVDPDESVENLKALLEVETSVPLRQQQLH FNGREIQNTDKLSTVGVQDGDLVMMVKVTSNERPSQDIIRLNPDGSAVDPQAFRQHIR GDSQLMGQLLQNDPALAQAILGDDINELQNTLRSRHQQRLELKRKQEEELALMYADPF DVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQ STIISKSCAERCGLLRLLDQRYRGVAIGVGQSEILGRIHVAPIKIGHVFYPCSFTVLD APNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSHIRDEEKLSKLA SLSQGAAGESSTAREKTPDAPPRAPTTGAPAVNPPQPQGGGDFEAKVTKLVELGFDRA SVIQALKLFNGNEEQAAAFLFGG</aaseq>

Gene Sequence

<dnaseqindica>127..192#587..619#728..858#1152..1260#1384..1500#1874..1939#2292..2354#2437..2481#2668..2729#2952..3045#3353..3445#3539..3608#3794..3870#3954..4011#4113..4144#4223..4354#cgtagactctcccccgagcccaagcaaggcaagtcccccacaccacttcccttccctctctgcagccgaggcggcggaggagaagaggagctcgatcgatcccccccaccggcggcggcgggcgagatgaaggtcaccgtgatgaccgccgacgagcagattctcaccgtcgacgtcgaccccgacgaatctgtaagcccccccgcgccgccctcccactcgtctcgatctctgtaactggggggcgtcaatcaagacgggttcctttttgggacaaattcggttcatctagtggcggaattcgttgggaattcgggtgcggagcgggcgcatttgagttgagaggcggtcagcgattcagttcttgtggtgtgttggatcgtcggttggtgtacggattggatggatctttgacaggcttcggttgtttggtttggtttagagcgtcagtcccttcgtcttcctcgtgctcttggtataatatggttgtagagctagattttgtagaataccttggaactgaattgtggtttagaatgggaaagatgcagtttttggctaaattgtgcgtgctgtgttcttgcaggtggagaatttgaaggcgcttcttgaggtggaggtgagctgggactgtaatcttgtgtgagctatgtgtttaaggctctgcagctactgggtttgatctcactgttctcacattgttggttttttggctgcttgtggacagactagtgtgcctttgcggcagcagcagcttcacttcaatggcagggagatacagaacacggataaacttagcaccgtcggagtccaggatggcgatcttgtgatgatggtgaaggttacctctaatgaaaggtctgcttgctggcattcctcgtgcataaaaagtaaattgatttgcatgacatatacttgtaaagttttttaattgagttacttaagagttttacattccgaattgaattacttaagagttttacatccttcagttcaattctggtcttactggcagttacctcctttgtagttgtccagtattactttttgcgcaataaaggatttttagtttgttaaaactgatgctatgaatcgcgatgccactaaggtttcttttctccaatttaatttgtctgggttgaaaatttcaggccatctcaggatattataagattaaaccctgatggatctgctgttgatcctcaagctttccgacaacatattcgaggtgattcacaacttatgggacaactccttcaggtaaattttactggtagcttcattactttgtggctggacagtttatatactttaatgtgcttagatatcacttggggcaaatattttcttttcttatatcggaaaacggatatttatttgcagaatgacccggcattagcacaagctattcttggtgatgacatcaatgagttgcaaaataccttgcggtcacgccatcaacaaagactagaactaaagcgcaagcaggaagaagagcttgtgagtatctaccacgagatagcattacttttaaagggagaatattaagggggcccttatatgttaccatgtctttgggaactaaagctgagattgtgtggtttgttcctgcatgttactcacagcacagttaaagattttctattctgcagtctttttatctaaaaaatgatttagcctttccttgcatttatataagtatatatctctatgatgtttcgtgtgcattgtattttccaaaattgcacttttgacttatcttacatatacttcaccacttcgaggcttggtagttcatgatttgttggttgtgttgtgttactgtcttattgattaacgttagaaaattcactaataaatgtgtgttttgcaggctctaatgtatgctgatccttttgatgttgaagctcagaagaaaattgaagctgcaattcggcaggtaagcatatttttttctgaaacctgttgaccgctaggtgatgattcctttcgcatatcagtggacaagtgtgagatatcatgaacatcattacaatagtgactagtgttaaggagacataaagattctttattacaaagttaagaataaacaagataacttaaatataaatttttctggctaccatgcttggatataatgaattgttcgtcacagcattctgtttttctacagttaaaaaagtaccttttctgatttcactatgattcatactttcttctctactcacctgttagaatttatccagttagatgtctgattatgatactttaatttacttgtcgcattacagaaaggtattgatgaaaactgggaggctgccttggagcacaaccctgaagcatttgctcgagtggtatgttttaccttagttttctcctgttttacgttctatgctttgtgatacttgctaaccaattagtattctgagatatcaggttatgctgtatgtggacatggaagtcaatggtgtacctttgaaggtattactctttcacatttatcctatataaccaacatactgagaattaatgcattctggtgaaatttaaatatttgagaactaatgtaggcttttgctgctctttttttgggtgcaatgttttaattcttctcactgattgtaaggatatgtttaatgttccattgtttttttttttcatcttcaggcctttgttgacagtggagcacaatcaactatcatatcaaaaagctgtgccgaacgttgcgggtacacttgcaatttaagatattggttgattggaattatttaaacttttatagtttgtatagtaattctgcatgggaagacataaatattgaatagcttactttaacatttttctctgagacgggagaaactaaatcagtttctcttgatactcaactgaaatgtacaccattgcatatttacatattgtgtatacatctgacaaagaaatatcatatgcaggttgcttaggctgcttgatcagcgatatagaggtgttgctattggcgttggtcaatcagagattcttggtagaatacatgtagccccaataaaggtatgtttgattgattcatgtacccatgccactgatattacagtgtgagagaatatattatttatatgatacaaaattcatcacctgggtagaaaacatgaaattccaggtcccatagaaaccatgtgacaagtcctagtataacccaagtctttggtgttcctttagaacctagcgatttcagttattctcatacctctacaaacttcaatggttttgcaatttgtgaatcgtgatatgtaattccgtactaattatttagcagaagtagtttgtaatgtaaatactgacagcttgatttggacagattggccatgtcttctatccttgttcattcacagtattggatgctcccaatatggaatttctttttgggcttgatatgctgcggaaacatcaggtaatcgtgtgactaagatctggtacatgctgttgcatctaaatctgatagtctgattacacttcttactgattcttttgttatctcacacagtgcataattgacttaaaagacaatgttcttagagtaggaggtggtgaggtttcagtgcccttcttacaaggtaagtaattttgtatcaacaatgcattccatttttataaatgtacttttcatgaaggtttactgaaataaagctaccaaagaagttaatttttatagttccctcctcctagactttcatctggttatatacttatgcagttttataaatttagttcttcaaccactctgctattctatcttcagagaaagacatcccttcacatatacgtgatgaagagaaactatcgaagctagcatctctcagccaaggagctgctggagtaagctaaattcgcttttgctttttttccttgaattgtgatttgtaacatcaaaatatccttatttactccatcttatccaggaatcgtcaacggcacgggagaagactcctgatgcgccaccacgagctcctactacaggttagtttgcttttgctctggtaggtctaggactgcgtaatctatgccatctgataacttcgagctaatgagaaacctccatcttttcattttctttccaggtgctccagctgtgaatcctccgcaaccacaggtagtcgagatctcttttatttttgttaaacttttgtgcatcaaattgattctgactgtctataaaaacatctaccagggaggaggagatttcgaagcaaaagtcacgaaactggtggaacttggattcgaccgggcatccgtaatccaagctctcaagttgttcaacgggaatgaggagcaggctgctgctttcttgtttggtggttagagtcttgtgatgatgatttgagagagttctttctattgctcacgaccctttcaagggctgaacattttatacacagtgatggagggagatatcagtatatcacctcttgggcctttgtgaaactagaacttctgtttggccaatacaggcttttggtttagagatgatggttcatatttctccttccatagaaaacccattttcttgccttcagtacctgatacaaagatcatgtgcatttcgatctcatttgtttgccaatgatgtgaattattggtctcatatatatggtcctcacaggtgaactgc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0198600, RefSeq:Os02g0198600