Os02g0199900

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Revision as of 02:19, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0199900| Description = Similar to 26S proteasome regulatory complex subunit p42D| Version = NM_001052753.1 GI:115444876 GeneID:4328642| Len...")
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Gene Name

Os02g0199900

Description

Similar to 26S proteasome regulatory complex subunit p42D

Version

NM_001052753.1 GI:115444876 GeneID:4328642

Length

5449 bp

Definition

Oryza sativa Japonica Group Os02g0199900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:5595400..5600848

Sequence Coding Region

5595813..5595887,5595973..5596071,5596136..5596327,5596992..5597129,5597415..5597501
,5597583..5597669,5597795..5597956,5598089..5598225,5598483..5598602
,5600668..5600773

Expression

GEO Profiles:Os02g0199900

Genome Context

<gbrowseImage1> name=NC_008395:5595400..5600848 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:5595400..5600848 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgacggggaggacgccgccgccgcccgccgccgcgcctccgtgacggagtaccggaagaagctgctcaactgcagggagctcgagtcgcgcgtcagcaccgtgagggaaaacctaaaaaatgctaagaaggactttacaaagaccgaagatgacttaaaatccctgcaaagtgttgggcagatcatcggagaggttctccgccctcttgataatgaacgttttattgttaaggctagcagtggtcccagatatgtggttggttgccggagcaaagtggacaaggagaaattgacttcgggaactcgtgttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggtggaccctgtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctgctgttggtggtctgtctgatcagattagagagctcagggagtccatcgaattgcccttaatgaaccctgagctctttcttcgtgttgggatcaagccccccaagggtgttctactctatggtccaccaggaactggtaagacactattggcgagggctattgccagtaacatcgatgccaactttttgaagattgtttcaagtgctataattgacaagtacattggagagagtgcccgcttgattagggaaatgtttggctatgcacgtgatcatcaaccatgcataatcttcatggacgaaatcgatgccattggtgggcggcggttcagtgaaggaactagtgctgatcgcgagatccagcgcacactgatggaactgctaaatcagttagatggatttgatgaacttggaaaggtgaaaatgatcatggctaccaatagacctgatgttctggaccctgcgctactgcgtcctggacgtctagacaggaagattgagattccgctaccaaatgagcaagcaagaatggaagttcttaaaatccatgctgctggtattgccaagcatggagaaattgattatgaggcagttgttaaactggctgagggcttcaatggggctgatcttcgcaacgtctgcactgaagcgggtatggctgcaattcgtgctgaacgggactacgttgtccatgaggacttcatgaaggctgtcaggaagctgaacgacgccaagaagctggaatccagcgcccactacagtgcagacttcggcaaagagtaa</cdnaseq>

Protein Sequence

<aaseq>MADGEDAAAARRRASVTEYRKKLLNCRELESRVSTVRENLKNAK KDFTKTEDDLKSLQSVGQIIGEVLRPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSG TRVVLDMTTLTIMRTLPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPL MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGES ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDE LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEID YEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVVHEDFMKAVRKLNDAKKLESSAH YSADFGKE</aaseq>

Gene Sequence

<dnaseqindica>4962..5036#4778..4876#4522..4713#3720..3857#3348..3434#3180..3266#2893..3054#2624..2760#2247..2366#76..181#gcgctactcttcttgcgacagaagcaaaaggcggcgaagagagagagagagagagagagagcgagatcgccggagatggccgacggggaggacgccgccgccgcccgccgccgcgcctccgtgacggagtaccggaagaagctgctcaactgcagggagctcgagtcgcgcgtcagcaccggtgagccgcccgctccccacccctctacttcccccctgcttgacttccgatctccctagggttcggaggcgatgggttgcgatgttaccctagccgccgcgtggcctgcgcgcgcggtagatctcgtccgcgtctgcggatgacttggatgaagagtggctcgtgtgtagattcggtcggcagggtggcttagtactggtgatttcggggatttactaggggaatcacttgttccgcgacgtgttcggggtgctagatcgcggtctggggcgctgggcgttgggttacgaggttgattaggtcggtttggtctttcgagcgctaaatctggtgatttgggcactttttgctcgatttggatctgaagtctgtagtgtgattagacttaggatttttgtattagtcaaccctgaccatttgggtgagtgataaccaacctctcataaattcgggatcaaggaggagtatttcctgatccttcagtagtttttcttccttttcaactgtatgattatggaggtgctagctcctcttagtgcgtcatttaggtctctaattatggtttgaactttaaagtgcttcctgtgagaatgtctaaagaatttatttaacttgtttgagattttggtactgtgggggtgcgattttcatggaactcaagcattatctgcttcttcaacagtagtttccatgcttcaagtaggctgcagcactctagcctgatgtggtcattagtctcttagagcagccacattgtttaaaacgtggattgattattctagttaagtgagagctgtatagtacaccataggtgtctatatctagacctatttaagcctgaatcaatatactggtatccttgagaactctttcatatatactatgcttctggtggactgtagtttcataggttatacttttgctgctggcagtcaatgagttaaggcttaggtacaatgctcgtaatctttagtcatgggattatggctcatcccagttaatgtcaactaacaaatgggctttgtgatgcatatactcattaccatgtgtggtttgaggaaaaaatgtggcaaccagggttatatggcttagagcaagtcttatagaagaggtagatgccacctctgtccatgtaggctattcattaatgaagaggtggcatgtacaatatatcacctctatatactaactctagtgcactaaccctaataattttgttttatttgtttgtccaatctactcttctcttttctctcctttctcttggagtttgtgtggaggctaccccttgcatgagtggtggctcctcctctctctcttcttgtctcttctctcctccacctcatcatatgatgctatgtggcatcttgtggcaagtgatcctatgtggatcttggggcaagtgtttaggggcttgtagtacttgctcttggcaatactcagcctggagggacccatgcgatgatagcagtcatttatttgctttgataattttgtattatactaggatattcagccaaatttccttccaaggaagtagcgttatttgtggagtcaaaacacattcctctttagtttaatgatcgtgaaaacacacttcagctgcatgaaatcgtggcttgttattgttagtaaagtagtaactgttagctattgtaggattgtgcatcatttctttcccatattttttttgtttggtttagttgtaacagcttgtttgttcacatgccaacctttggtttcttctcttttagtcttatactccctgttattatagataaacaacaggaggagaagattagttttttaactattggatgattcccatactgaagtttctttgcatccataaactttgctactatagttcatttggaactcaagtcaaacctttttcttgggcaactgaacaacatctagtcatgtctttgccgttttgttttgttttttgggaacaatacaagtaaatttaaaacacatgtttgcttgcttttagaactttttggagcctgtttcatttttatttgcttgatcttgctttgatgcatggttcatctatatgcagtgagggaaaacctaaaaaatgctaagaaggactttacaaagaccgaagatgacttaaaatccctgcaaagtgttgggcagatcatcggagaggttctccgccctcttgataatgaacgttgtaagtaaagagcatttcctttttgtgttgaatttacatcctttactttggccactccttatcactacagaaaaatcacaagtatttgcttttgccatttctttccttcaatgatggaaaatgactacaatactgttaattaacttgatagaattattacttatagcatttttatatgaagctattgcttgcattttagatttttttttatcaacagaattttagaactaaacaactgaaacgcctatttcttcaagttattgttaaggctagcagtggtcccagatatgtggttggttgccggagcaaagtggacaaggagaaattgacttcgggaactcgtgttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggtatatttagtttttaaaaatcatcttcctttttcattggagcatttttgtcgaaccttttactgtaggagcaatttttttaaacaaaaatcgatgatctgggatttaaaactgcttttttccccccttcaggtggaccctgtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctgctgttggtggtctgtctgatcagattagagagctcagggagtccatcgaattgcccttaatgaaccctgagctctttcttcgtgttgggatcaagccccccaaggtaaatcctacattatttgtacttagatccctaatagtgcatgtaatgtgactatgagatcacagagacatatatatggatattgcaactatggaagttattatattttactttactcattgcagggtgttctactctatggtccaccaggaactggtaagacactattggcgagggctattgccagtaacatcgatgccaactttttgaaggtgtgtcgtttgctcacttaataggtagtagccatcttttacaaactaattattctttgtactgataatttggctaaacagattgtttcaagtgctataattgacaagtacattggagagagtgcccgcttgattagggaaatgtttggctatgcacgtgatcatcaagtaagtcttaatctctctctacttttgtctggaaagctagttggacctaaattggcatcctcatttctgcaagacctactctgacatttacatgatctaaccataatcatatccacattgtggaagttattgttggttctaaagttaaaacaatccttacgctataatcttcctttacatttaagttgctatgtggacactagcggtgcatttctccaatcactttaactcacattcatttagtttccatcactcagttttgcctcccaaattttctttacctagccatgcataatcttcatggacgaaatcgatgccattggtgggcggcggttcagtgaaggaactagtgctgatcgcgagatccagcgcacactgatggaactgctaaatcagttagatggatttgatgaacttggaaaggtaacttattcatcagacatataatttggctatactgcattttattttggtatcatactgcagtatgtaaatgcaagtgagtttgattaaagtagtttacttgctagcatgtttgcatgtctacattctggtctagctttcttgggtaaaactacactgatgagggaaaatatattctaatttacctttcttttaacaacctccattgtacaagattagctgatctgtacagtgtagtattaagcaaaggtatgcataccttaagatcagtccttggtggaatcctgaaaatcataccattgacatgatgattcgtttataatccctgttgtagtattgtgagttgtggcatgttggtggcttgaccttttgccaattattcccactggcaacaaatattagaatctagatttatgatgaaatgacttttggctcttccaattgatcgaattgatcatcttaccaatctaggttttttgactgctcaattgtccatctatgtctatgttcctagtttgttcagaatcaaattgggtgtgttcagaatcaaattggagatacagttggttactcttgtttgtatggtttttttggtaccatgtacaatgattgctgcttgatgatgcatgatttcatcttgacaagaacttttttgcttaaacaggtgaaaatgatcatggctaccaatagacctgatgttctggaccctgcgctactgcgtcctggacgtctagacaggaagattgagattccgctaccaaatgagcaagcaagaatggaagttcttaaaatccatgctgctggtattgccaagcatggagaaattgattatgaggcagttgttaaactggctgaggtgagtttgtcttatttaacttccttatcaacttgggcaaccttcctgactctggtggttttagggcttcaatggggctgatcttcgcaacgtctgcactgaagcgggtatggctgcaattcgtgctgaacgggactacgttgtccatgaggacttcatgaaggtgcgccgcattatactctcttctatctaccaacacaccagctgttagacattatctcacagtttacatgcgaattgtacttcaggctgtcaggaagctgaacgacgccaagaagctggaatccagcgcccactacagtgcagacttcggcaaagagtaaggtgcaagattctgatcctgtattcgatcttctaccatgccgggagttctccgccatggtgcaaaagcaacagagaaatcggtttttcaccgtcaggcttctattctgcactgcaagctgaagccatttgtcatgtgtgcaatcaaagagccatgaatggttgtcaagcttatctctgggactggagaaacataccgagaacttgcaaattttataactgatgcttttgcctctgtttcactccgttttttgagtctcaccttgtgtcagtactactgtgtagtcttagttttgagcagttgcatgtacttttgacaccatgcttggtaaagaatagcaaaatggtatcttgattcagcttccagacccccatctggtgtgggaatgcatctcaattcctgtgaaattcgtgc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0199900, RefSeq:Os02g0199900