Os02g0209100

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Revision as of 02:19, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0209100| Description = Similar to Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)| Version = NM_001052799.1 GI:115444968 Gene...")
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Gene Name

Os02g0209100

Description

Similar to Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)

Version

NM_001052799.1 GI:115444968 GeneID:4328694

Length

6340 bp

Definition

Oryza sativa Japonica Group Os02g0209100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:6160817..6167156

Sequence Coding Region

6161525..6161674,6161911..6162046,6162323..6162429,6162906..6162999,6163099..6163295
,6164301..6164369,6164451..6164568,6164644..6164760,6164841..6164932
,6165028..6165204,6165293..6165367,6165457..6165597,6166339..6166527
,6166869..6166934,6167018..6167155

Expression

GEO Profiles:Os02g0209100

Genome Context

<gbrowseImage1> name=NC_008395:6160817..6167156 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:6160817..6167156 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tatgatgaagggacaataatgataaaaattggtcgtgaagttcctgttgctagcatggacagcagtggaaaaatcatatggtcaaaacataatgaaatccaaactgttaatatcaagactattggtgcagacaatgagattgcagatggtgagcgcttacccttagctgtgaaggagttgggaacctgtgatctttatccacaaagcttaaggcacaatccgaatgggagatttgttgttgtatgtggagatggagaatacataatctacactgcattagcatggagaaatagatcattcgggtctgcacttgaatttgtttggtcagttgatggagaatatgctgtcagagaaagcacgtcgaggataaagatatacagtaaaaatttccaggagagaaagagtataagaccaccattttctgcagaacgtatatttggtggagtattgctggctatgtgtacaaatgattttatttgcttccatgactgggcagagggcaggatgatacgcagaattgatgtcaatgtgaaaaatctctattgggccgatagtggtgatttagtgacaattgcaagtgacacctcattctacattttgaagtacaatagggatgtagtttcttctcatttggatggagggggttcagttggcgaggaaggtgtggaagatgcctttgaactacttcatgagatcaatgaacgcatccgaactggcctatgggttggtgattgttttatctacaacaattcttcgtcacggcttaattactgtgtaggaggagaggtcacaaccttatttcacttggatcggcaaatgtatttactgggatatcttgctaaccaaagccgtgtctatcttattgacaagcaatttaatgttgtggggtatactttactccttaccatgattgagtataaaacacttgtaatgcgtggagacttcgatcgtgcaaacgctcttttaccatctataccaaaagaacaacatgacagtgtggcacgtttcttggaatcacagggcatgttggaagaagcccttgagatagcaacagactctaattacagatttgacttggccgtgcagcttggtcggcttgaagttgcaaaggcaattgccattgaggcacaaagtgagtccaagtggaggcagttaggagagttagctatgtcaaccggaaagcttgatatggcagaggagtgtcttctacatgctatggacctcagtggtttattacttctgtattcatcccttggtgatgctgaagggctaacaaaattaacatctatggctaaagaacaagggaagaacaatgttgctttcctttgtttcttcatgctaggaaaacttgaagaatgccttcagttgttaatcgaaagtaatcgtataccagaagcagcattgatgtcgagatcttatcttccgagcaaagtccctgagattgtaacattatggaaaaaggatctccaaaaggtaaaccccaaagcagcagaatcattggcagatcctgacgagtacccaaacttgtttgaagactggcaaattgctctcaatgtagaagctaatgtcgcgcccaaaaggggtatttatccaccagctgaggagtacattatccatgctgagaggcccaatgagactctggtggaagctttcaaaagtatgcatatacatctagaggaggtgctgccagatgaaaatggagatgacactcacgaggctattgaggaaaatggagtagaagagagccaagaagatgctgttgaggttgatgttgaagctgatggttcgactgatggtgctgtccttgtgaacggaaatgataccgaggaacagtggggtacgaacaacgaagaatcatcagcataa</cdnaseq>

Protein Sequence

<aaseq>YDEGTIMIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGAD NEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGS ALEFVWSVDGEYAVRESTSRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFIC FHDWAEGRMIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVSSHLDGGGSVG EEGVEDAFELLHEINERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLL GYLANQSRVYLIDKQFNVVGYTLLLTMIEYKTLVMRGDFDRANALLPSIPKEQHDSVA RFLESQGMLEEALEIATDSNYRFDLAVQLGRLEVAKAIAIEAQSESKWRQLGELAMST GKLDMAEECLLHAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNVAFLCFFMLGKL EECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPN LFEDWQIALNVEANVAPKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDEN GDDTHEAIEENGVEESQEDAVEVDVEADGSTDGAVLVNGNDTEEQWGTNNEESSA</aaseq>

Gene Sequence

<dnaseqindica>5483..5632#5111..5246#4728..4834#4158..4251#3862..4058#2788..2856#2589..2706#2397..2513#2225..2316#1953..2129#1790..1864#1560..1700#630..818#223..288#2..139#atatgatgaagggacaataatgataaaaattggtcgtgaagttcctgttgctagcatggacagcagtggaaaaatcatatggtcaaaacataatgaaatccaaactgttaatatcaagactattggtgcagacaatgaggttttctgttcaccatgctaatatgttgaaaacttgtaatactttcttatacgtcatgtttcctaacctgttctatttttcagattgcagatggtgagcgcttacccttagctgtgaaggagttgggaacctgtgatctttatccacaagtatgttcatattttctatttaaatgaatgcatcattcgcatagtgatcaagtgatgttttccaccagaaccaacttgatgcttgcaaatgagtcccaaatttctgcttgagtttctttttcctattcattacatgagtcacatgtatacaccatttgaccatgcatgttgaaatatttttaatatgttaatttatttgacatttgcactggtgagttgttttatttaaacacaccttggagattctgttgttgtagtaaaattaaattaatctcaaatctagtatagtgtaattatagtgtatgttagtaattatagtaattatagtgtattcatttcagagcttaaggcacaatccgaatgggagatttgttgttgtatgtggagatggagaatacataatctacactgcattagcatggagaaatagatcattcgggtctgcacttgaatttgtttggtcagttgatggagaatatgctgtcagagaaagcacgtcgaggataaagatatacagtaaaaatttccaggtttgtactaccactgtcccttcttttaattatctttgtacatcagagtaggggtccttcaatgcaatgtgtgggctagaaaaatttattgggtgtgcacatttcatggacaacctggagtactgtgcacattccaatagaaattagtataaaattgccaaaaaaaattgcaaatagttcaaaaaaatatagcctgaataggaaaccacaaattatataacgaaaaaatgaatatctcatgaacatttataaatcaccaccatcaatcttcaaagaacatatccattgtttcaaatcgtttttcacatttggctaatcccaattagaaaatccattaaaaatcatctacaatttattaatataactgaaggtttcataatataaagttagtttgtttcttgtttttctttagaatatataaaatcagtaaatgaccaactccttctggatagggatatgggagtgagcaatattgcctatagtagtttgggtagactgatcaatactcaatatgatctcctatattcctctcgtgccaacatatcatatttcaaatggtaatatcctttgcactgtaaaatgtgatttgagtaaggggcattatgaaccactttattcttctactgtttcagggtcaacttgttacttatatttattagccagctgccaagcttatcacaacaatctcctttactgtggtttctgaaaacatagtatgatgataaaacctatctatttcaggagagaaagagtataagaccaccattttctgcagaacgtatatttggtggagtattgctggctatgtgtacaaatgattttatttgcttccatgactgggcagagggcaggatgatacgcagaattgatgtcaatgtgaaagtgagtaattttgttcatggattcaaatttattttgcgtgtcatttggaatattatgatgctaaataggatccgctttcttatttgtagaatctctattgggccgatagtggtgatttagtgacaattgcaagtgacacctcattctacattttgaagtacaatgtaagtttttctgcattttgttggctctgtagttcaatgatgtaacatctacttgatgtaactataacacaacaattataccttccagagggatgtagtttcttctcatttggatggagggggttcagttggcgaggaaggtgtggaagatgcctttgaactacttcatgagatcaatgaacgcatccgaactggcctatgggttggtgattgttttatctacaacaattcttcgtcacggcttaattactgtgtaggaggagaggtaagtattttcattatatcaaaaatacattgtcacatatgatttggttagacccttaattttcaggggtagtataactattcgatgtattacaggtcacaaccttatttcacttggatcggcaaatgtatttactgggatatcttgctaaccaaagccgtgtctatcttattgacaagcaatttaagtgagtcttggttgtctggtattgtatcatattctgaagccacaatgaacttctgaggttaacttgttttcttactgcagtgttgtggggtatactttactccttaccatgattgagtataaaacacttgtaatgcgtggagacttcgatcgtgcaaacgctcttttaccatctataccaaaagaacaacatgacaggtgccccctgttctgctaattattgtactctgcaactcaggcctcagaatctgaagataacccttttattttcagtgtggcacgtttcttggaatcacagggcatgttggaagaagcccttgagatagcaacagactctaattacagatttgacttggccgtgcagcttggtcggcttgaagttgcaaaggcacagatgattaatttatttatcacatttccaagaatgtttttgtctttgttcaaatgttgttaactatttgcttttcaggcaattgccattgaggcacaaagtgagtccaagtggaggcagttaggagagttagctatgtcaaccggaaaggtacagctgttggatgtattagttactatcttctatgagtagtcaatatatattgtgctaatgaagtgggactgttctgccatggcattttagtttcttgattattagtaccagtataccgtgtaacttaataattatgagcacacaaataaatccctccgtccaacaatataagcacttgaagcatttgaattttgtccatgaatataagcatttctacaatacatatgtaaaatcaatcgcctcatttaaatttcttcccatcttaggcccaaccagccttcaaccccaaccttctcattaaatgagggcactaaagtactgtctcctcaactttaatctttgctaaacaacctagaaatgattatattcttggacggaagaagtatataattcaacaatggcatttgtgaagagataatattgcagttttgatgggaaggcgctttggtcgttgctatgatgctagaattatagaacctaagaagttattttgccttcgcttttgctctttccatcttttgtactacctctatttcatattataagtcattttgactattttctaagttaaacttctttaggtttgatcaaatctatacaaaaatatagcaatatttcgaacacataacaaagaaactatccaaatatattcaatgttagatgtaatgaaactaatttggtgctataagtgttgctatattttttctataaacttggttgaactttcaagaagtttgatttaaaaaaaaagtcaaaaccacttataatatgaaatggaaggagtagtagtttttcaaagtagaattatgcgtgcataacaataattttgcttgatggcagagttctgcgtgtaaaaaaataacttatcatcttagtgttaagtagaattcctgcaatttaataactttgccatgctatgtttccacgccttggcctagatacaaaactggctaaaagagtgcaccatattctaacctgtcaagtgtaaattactttctgcagcttgatatggcagaggagtgtcttctacatgctatggacctcagtggtttattacttctgtattcatcccttggtgatgctgaagggctaacaaaattaacatctatggctaaagaacaagggaagaacaatgttgctttcctttgtttcttcatgctaggaaaacttgaagaatgccttcagttgttaatcgaaaggtattgccatttgccaagactatcctatttaatagtacaatgcttattcagaaaatatattttttattttatggtgatcacgttatattctctatacagtaatcgtataccagaagcagcattgatgtcgagatcttatcttccgagcaaagtccctgagattgtaacattatggaaaaaggatctccaaaaggtaccatctgccctatcccctataatatttctttgtttttttctacctattctcatgcttaatcttttgcacacctgtattagatcgtgctcagttgctcacattttagcgtgacttgtctcttcaacctaagttacatattcaagcatgaaatttctgttcggcattactgatgatttttagtgatgtttagtgatgtttcagtcctttctggtggtaatactgatggtttttagtgatgtttcagtcctaacaggcagaatgccccatctaatttttgtgtacctgataaatcaagggcattttgtctattatctaagctagcatgaaaaaaccaaccaaaagacatgcttgttatcttgtgctagagtattgttcttattttcagacttacgcgacactgtttaatttgtaggagctatgtgttttattatctcaccatgccttttttccttctcatgccattatctttataggtaaaccccaaagcagcagaatcattggcagatcctgacgagtacccaaacttgtttgaagactggcaaattgctctcaatgtagaagctaatgtcgcgcccaaaaggtatgttcgtaaaagtaaaaactatgttcttttgtgaaagttttaccagttctctcttccatgcatgggacaagtcgtcaaggtttgctttcctcttctctttaattgaaagcatctgatgaaataagaatgatgtcctctaccatgtacaggatgtggggttggaatatcatatttagcttcaattgaacacatatagtgaaataaatagaagtaatgtcggtgctcatttgtattgtttttctttattgttctgatgaaatcctgtttgaataggggtatttatccaccagctgaggagtacattatccatgctgagaggcccaatgagactctggtggaagctttcaaaagtatgcatatacatctagaggaggtgctgccagatgaaaatggagatgacactcacgaggtatcactcctacggaaagagttgtaaaaaatattgttaaatagtgggtagctatttgaagatgttaaattacttctactaaactgatctctttttttgcatgcgaggtcctatatttatcaccaatctttaaaagtgatcattatttcaataaaatcgcatcttttgctcttcattatattttcttttcttcatgctttaagttgtaatatagtaatatcaatctgttccatcaggctattgaggaaaatggagtagaagagagccaagaagatgctgttgaggttgatgttgaagctgatggttcgactgatggtgctgtccttgtgaacggaaatgataccgaggaacagtggggtacgaacaacgaagaatcatcagcataaaagctgtagttgagcaagtgtacagtcctaaaaccctttttttggtcctcgtttatcctcccagtgcaccaatgatcacaatgaaaacttgatgctggtgtcctcaaaaagaaagaaagaaagaaagaaagaaaacctgcttctggatacaagtgtttattctggactatatcctttagtttaatctgttgggataatttcagttataatttcattttggtattcgagttaatctgttggtctgaccagttttcttagacagtttgaacatgagagcaaaatttgtgcttgctatacatgagttgttgatgttttctaacgactatcttgccttttgcagtattgactcctgaccaatagtgaatcagcgggacagcaacctgatacactgattcagcttgtaaaggtgaagtgtttttccatctatacaattagcgacagttgttaacaactattcatttattatagctaattattttttgacaggttgctgactcctactgaaactatgtgaaggccgttttcctccacttgtataatcattgggcgtgctttaagatcggcatatccgacgataaaacccacagaaattagtcatcgctttgtccttgtttgagatagaaaattttgtacctttttacacacataggtccttactgtgggttctcaggatgctttatatatacgagggatgttcccttcttgttg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0209100, RefSeq:Os02g0209100