Os02g0217500

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Revision as of 02:20, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0217500| Description = Pre-mRNA cleavage complex II Clp1 family protein| Version = NM_001052834.1 GI:115445038 GeneID:4328733| Length = 435...")
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Gene Name

Os02g0217500

Description

Pre-mRNA cleavage complex II Clp1 family protein

Version

NM_001052834.1 GI:115445038 GeneID:4328733

Length

4354 bp

Definition

Oryza sativa Japonica Group Os02g0217500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:6597146..6601499

Sequence Coding Region

6597262..6597450,6597585..6597653,6597769..6597870,6598286..6598527,6598957..6599095
,6599198..6599251,6599735..6599872,6600215..6600447,6601104..6601148
,6601231..6601318

Expression

GEO Profiles:Os02g0217500

Genome Context

<gbrowseImage1> name=NC_008395:6597146..6601499 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:6597146..6601499 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgcgggcggggccgcgcagccgccgcggcagtacaagctggcgccgcagagcgagctgcgggtggaggtgccccccgacgcgcccgtccgcgtccgcctcgtcgccggcacggcggaggtcttcggcaccgagctcccccccgagggctgggtccccgtcccgccccgctccaagatcgccattttcacctggcacggcgcgacggtggagctggacggggtcagcgagagcgagtacacgtccgacgagacaccgatggtggtttatgtgaacacccacgcgatccttgacgcgaggagggcgagggcgagggccgccgcggctcagggtgccctgccggagtcctcgcagggacccagagtgatcattgtggggccaagtgattctggaaaaagtactttgtgcaaaatgctccttagctgggctgccaagcagggctggaagcctacatatgtggatttagatattggccaaggttcgataaccatacctggatgtatttcggcaacacccattgagaagcctatagatatagttgatgggattcccttggagatgccgcttgcatacttttacggccatccaagcccaagtgttagtccagatgtttacagagctcttatgaaggagctagctcagacattggataaacaattctctggaaattctgaatctagggcagcaggaatgattatcaatactatggggtgggttgaaaaccttggtttagagttacttcacaattcaattgagattttcaaggctaatgtaatattggtattgggacaggagaaactatggaagatgctaaaagatgcagcaaaaaataagcccaacattgatgttgtaaaacttcataaatcagaaggtgttgttccgagaaatccaaagtaccgtcaaaagactagaagcttccgtatcaaggagtacttttatggcattgcgaatgatctagcaccacactcaaatgttgttaacttcagtgatgtatctgtttacaagattggcactcatcaagctcctaagtctgcactaccgattggtgcagagcctgtggcagaccctactcgacttgttgctgttaacatcagcacagatatggtccacaccgtgcttgctgtttcatatgctaaggaacctgatgaaatagtttccagcaatgttgccggattcatccacgtgacagatgttgacatccaaaggaagaagctcacatacattgcaccatgcccaggggacctgccaagtaagctgttaattgcgagctcgttaacgtggtacgaggcttga</cdnaseq>

Protein Sequence

<aaseq>MAAAGGAAQPPRQYKLAPQSELRVEVPPDAPVRVRLVAGTAEVF GTELPPEGWVPVPPRSKIAIFTWHGATVELDGVSESEYTSDETPMVVYVNTHAILDAR RARARAAAAQGALPESSQGPRVIIVGPSDSGKSTLCKMLLSWAAKQGWKPTYVDLDIG QGSITIPGCISATPIEKPIDIVDGIPLEMPLAYFYGHPSPSVSPDVYRALMKELAQTL DKQFSGNSESRAAGMIINTMGWVENLGLELLHNSIEIFKANVILVLGQEKLWKMLKDA AKNKPNIDVVKLHKSEGVVPRNPKYRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVS VYKIGTHQAPKSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAKEPDEIVSSNVA GFIHVTDVDIQRKKLTYIAPCPGDLPSKLLIASSLTWYEA</aaseq>

Gene Sequence

<dnaseqindica>117..305#440..508#624..725#1141..1382#1812..1950#2053..2106#2590..2727#3070..3302#3959..4003#4086..4173#aaaatctccaaaaccgcttcggcttcctctctcccctcacggcggccgtcgcttcgttcgccgattagccggcgccgccgccgccgccgccggtagagaacccaccccctccccgcatggccgccgcgggcggggccgcgcagccgccgcggcagtacaagctggcgccgcagagcgagctgcgggtggaggtgccccccgacgcgcccgtccgcgtccgcctcgtcgccggcacggcggaggtcttcggcaccgagctcccccccgagggctgggtccccgtcccgccccgctccaagatcgccgtaagcgcgccctcctcctcctcccacatcccacctcccgcggaggagaagagacccgccacgggattcgcctcgcctcggctcagctttgctgcgaccactgatttcttgccatttggtatgtttcggggtagattttcacctggcacggcgcgacggtggagctggacggggtcagcgagagcgagtacacgtccgacgaggtgatttcttcttctccatattctaatccccctgtgaattttggggttttgagcttcttccaatgcaatgcgatgtggttgtgacatagtactaattacatgctcatggctgtagacaccgatggtggtttatgtgaacacccacgcgatccttgacgcgaggagggcgagggcgagggccgccgcggctcagggtgccctgccggagtcctcgcaggtttgtgatctcgtctctctcggtttggcatctcgtcatgcaagttattgcacggttaattggtcaaaaattgtgtagtagatgcacactttttgattctgttatgtatattacataattgcataatactatgggatggctagcatgctaattttacagtttgttgcacatgaggtgttttagattcctagaaataatatagtgtgtgtgcctgtactatgtactccaacataaaactagttctgtttaacaaccaatgtgttagagcaataacaggttacaagttgatgagtaccctacggtccaaaattgaatatgggtgttgaaaacattgaaacattgtgcgaacaaagggtatatttatcccgaggtttttgggctgtcttgcttagttttgcctctcttcgcggtttagggacccagagtgatcattgtggggccaagtgattctggaaaaagtactttgtgcaaaatgctccttagctgggctgccaagcagggctggaagcctacatatgtggatttagatattggccaaggttcgataaccatacctggatgtatttcggcaacacccattgagaagcctatagatatagttgatgggattcccttggagatgccgcttgcatacttttacggccatccaagcccaaggtatgtcgttcccactaaggccttgttcggttacgcttggattcaatccgggctgggaataacaagtatagtaagaaatttatgatagatacaatgagagaccggaatttatttcgggccgggaaccaatttactcatgatagggataataagagacctggaatcaatccactagtcaagaggtgtggaactaatcccggcctcttattgtccctatcatgagtaaattgattcccggcctggaataaatcccggtctctcattgtatctatcataaatctcttactatacttgtcattcctggcccagattaaatccaagcgcaactgaacaaggcctaactgttttttccatgtattttatataaagacttcttttcttctactcaacttttttggcacctcaactatttctttatgttgctgacagtgttagtccagatgtttacagagctcttatgaaggagctagctcagacattggataaacaattctctggaaattctgaatctagggcagcaggaatgattatcaatactatggggtgggttgaaaaccttggtttagaggtaattttatttgtttcatgagcaacttagattttggttatgtgtgttgatggctaatatttatattctagcatgagttaattcaccatttgtgttgtgcagttacttcacaattcaattgagattttcaaggctaatgtaatattggtattgggacaggcaagtgcttctgttttcttcatagtgttgtagaactctgttcaaatgggatgtcactatcgtacttcatagtgctatttcaggagggatatgcttgtattatagggctgtggagagctctctagtcatttagtattccctgattcttatgtgctgccaagtgtactctggaatctatgttcagtttgatgttgatgatggctgctgtttatatacctcagtatgaatctagggggggcaaccaagcattttgttgaagtattgtattattgtctagacatttgcttgtgtgatatcaattattagcttgtgttatactgtcataggggtagttactgccccccccccctcccctaacaacaacacacacacacaaaggacagcgaaactattgctgttaggtttatgttgacaagtgctatcatgaataagcatgaaatgaaatggtcctgaagattggatcatttgatttgtctactgcaggagaaactatggaagatgctaaaagatgcagcaaaaaataagcccaacattgatgttgtaaaacttcataaatcagaaggtgttgttccgagaaatccaaagtaccgtcaaaagactagaagcttccgtatcaaggtaaattatttttctgataataaaatgtggaagttcctagattcaactttcaaaagtcaatgtttcaatacaaggcattgtttggtaggcaatatgagaaattaattgatgtaggcttaaatacacatgcattactgtacagtgtgactcacctttatgttcatttttctaatgttatcttacaatcgaaggaggcttaaacacacatgaattactgtacaatatcacctcctttttcatttttctaatgttatcatgcaatcgtatgttacatttgttcagttaatgccatcctattctgctctggtttgctaaagctaaattgtaacactcgctttgcaggagtacttttatggcattgcgaatgatctagcaccacactcaaatgttgttaacttcagtgatgtatctgtttacaagattggcactcatcaagctcctaagtctgcactaccgattggtgcagagcctgtggcagaccctactcgacttgttgctgttaacatcagcacagatatggtccacaccgtgcttgctgtttcatatgctaaggaacctgatgaaatagtttccaggtgataccaactgcccaaattagtgcttatgctttacatctactaaaatgtttatgcttagagccatagtcaatacagcttgatacggtgataccttatttatgcatataattggtacatcagggcccaggtataggaaagaaaaatacatagtaaagtttatggaattttgtattgtctttcagatgggtgggtttcttgcatgttttacatgtttgatattattttgctttcttcagaccaatctattatctgtatgcactaaataacttgtctgtgcacagttctagccctagctagtacgcatgtcacagctgttgcccacttaaaaacctgacaaacccatttactctaggtggcagttttcaaaactatttaagatctgtatcatatgatcattagatttatatacttgaaattcaggatatcaccaagttatcctgcaatcattttcagtagtttaccagtgtcattataatctgtactgctggattagctcgatcatgcgtgactaactacaacttctctagtctttcgttaccactacgcaaaaactgcaaaaattgtagcatcctttttcttgtaacaaacctgagtgtacctctttgacaattctggagatacgtttgctataaacctctttgacaattctgcagcaatgttgccggattcatccacgtgacagatgttgacatccaaaggtacccccaacaaccaagaaaactagcatgtacctttttatggattcgtggtaagacctaacttaacatgctctcatttcaggaagaagctcacatacattgcaccatgcccaggggacctgccaagtaagctgttaattgcgagctcgttaacgtggtacgaggcttgatcagctcatggcagaacgatcaacgatgtagctaggtggtcagttaaattaatcagatggatgtaacacagatgtatcccttgtcctatctccgggtgtacgttgtaaacttgcaagctttttagtaaactcaatgcactgctaactaaaacttataacagcaaatttcactcatttctct</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0217500, RefSeq:Os02g0217500