Os02g0227000

From RiceWiki
Revision as of 02:21, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0227000| Description = Protein of unknown function UPF0054 family protein| Version = NM_001052884.2 GI:297598865 GeneID:4328787| Length = 5...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0227000

Description

Protein of unknown function UPF0054 family protein

Version

NM_001052884.2 GI:297598865 GeneID:4328787

Length

5324 bp

Definition

Oryza sativa Japonica Group Os02g0227000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:7155757..7161080

Sequence Coding Region

7155814..7156170,7156326..7156577,7156666..7156761,7156913..7157083,7157728..7157937

Expression

GEO Profiles:Os02g0227000

Genome Context

<gbrowseImage1> name=NC_008395:7155757..7161080 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:7155757..7161080 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcgcctccaccacctcctcctctcccgcgcgctcgcctcccaccccctccaccaccacctcctcccgtctccgccgccctcctccagcctcctcccaccgctgctcccctcgccaccgcgtcctccttctcctccttctccgcttcccggtggtcgcggcgtgccccactcctcgctcgccgcggcctcgcggcactacgcgtcgtcgacacctggacgccggaggcgagcgccgccgatgctgctgaggcggaggagggcgaggcggccgccgcgggagggccccgccgagctcaacgtgcagattggcatcgaggaagccctccccgacgaccccactatcctggtaataagcattgcagaagcgcttcaaatggatgttgctaaggcagcgaaggtggcctttgaccacctcgaaaactcggagtacaaaaccagagacaattgtataagcgatgtgaataagtacgatactgttgaggtctctatactgctttgtgatgacgatttcattcggaaactgaataaggaatggagggacgaggatcacgctacggatgttctatcaatgtcgcagcatatccccgggctggacattcccattctgcagttgggtgacatagtaatctctattgacactgcacaacggcaagcggaagaaaggggccatacactgcatgatgagataagaattctcatggtgcacggattattgcatttattgggctttgatcatgagctcagcaaagtggctgaagaagagatggagagcggggaagaacatatcttaaattctctagattggaaagggaaaggacttattaagagtgcatatgattccattcatgacatggatcattcacaaagttatacccgggcttccacaataagaactttcaggcttcttgatttgggagggaaatatcgttttatatcagagagttcacctggtgtatttctacaggtacatactctccagtttcacctgaataatttgagaaaagttgttttggttatcagagctttgtggccatgttatcttaccttatctgttcccctgcgatataatggtgattggtga</cdnaseq>

Protein Sequence

<aaseq>MARLHHLLLSRALASHPLHHHLLPSPPPSSSLLPPLLPSPPRPP SPPSPLPGGRGVPHSSLAAASRHYASSTPGRRRRAPPMLLRRRRARRPPREGPAELNV QIGIEEALPDDPTILVISIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYDT VEVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLDIPILQLGDIVISIDTAQR QAEERGHTLHDEIRILMVHGLLHLLGFDHELSKVAEEEMESGEEHILNSLDWKGKGLI KSAYDSIHDMDHSQSYTRASTIRTFRLLDLGGKYRFISESSPGVFLQVHTLQFHLNNL RKVVLVIRALWPCYLTLSVPLRYNGDW</aaseq>

Gene Sequence

<dnaseqindica>58..414#570..821#910..1005#1157..1327#1972..2181#gtcttcctcctccggctaaaaaccttctagaatcttctagacccctcgcgctcctccatggcgcgcctccaccacctcctcctctcccgcgcgctcgcctcccaccccctccaccaccacctcctcccgtctccgccgccctcctccagcctcctcccaccgctgctcccctcgccaccgcgtcctccttctcctccttctccgcttcccggtggtcgcggcgtgccccactcctcgctcgccgcggcctcgcggcactacgcgtcgtcgacacctggacgccggaggcgagcgccgccgatgctgctgaggcggaggagggcgaggcggccgccgcgggagggccccgccgagctcaacgtgcagattggcatcgaggaagccctccccgacgaccccactatcctggtaatagtagcttctgcgtgcgtttctctcaccatttccatataaaattatctatcgcatttgacgatttgaagctaatttgctctgtttattatatacggttcttgcactgaaaaatgttgaaattgtttgtccctcttatgacctgagttgctatgcagagcattgcagaagcgcttcaaatggatgttgctaaggcagcgaaggtggcctttgaccacctcgaaaactcggagtacaaaaccagagacaattgtataagcgatgtgaataagtacgatactgttgaggtctctatactgctttgtgatgacgatttcattcggaaactgaataaggaatggagggacgaggatcacgctacggatgttctatcaatgtcgcagcatatccccgggctggacattcccattgtatgtgtaccattgagtcgatgaataccatgactaacatattgtttgattaccatttttttctgatatgtttgtgtttgtttgacagctgcagttgggtgacatagtaatctctattgacactgcacaacggcaagcggaagaaaggggccatacactgcatgatgagataagaattctcatggtttgtttcgctcatttctagcatcactttttattattattattttggtctaatgtggtgatccggtgcattttcatcatcttattttatttcctaattcccaatttcggagtagattgtaatcctattcaatgctaacgaactccaacaggtgcacggattattgcatttattgggctttgatcatgagctcagcaaagtggctgaagaagagatggagagcggggaagaacatatcttaaattctctagattggaaagggaaaggacttattaagagtgcatatgattccattcatgacatggatcattcacaaagttatgttggtaggtatcttcacacattttagcatgctttttctttatgttgtcagtcaatttcttctaattggagttcccactgatttccccattgcatgcagaggccagtagagattcagatgaaattaacctacgggaagttcatcaaccaaaactgagccatatcgtatgtgatatagatggtgagttgatggagcatatagaagtatgctgtttgtgttggacctttcctagttctagcaggtaacttcttctatataaatgttaaggcattgtggataatgaaggatacccgcatgaagaatcaatagaatctttgagagaggcagtttcaaggggaataaacgttatcacggtgactggaaaggtgggtttcatgtattcgtgcatgcaaagtgaatgtggcacctatctgaagtgaatgctaaactgtagactgctttcttcaacatattatcaatgctatttctagctttcttatagaagaacagagtattagaaatttggaatattaaagttccctgatgaaaggggagttaccgcaggaggatgtttagtgcttaaaggaatcaattttcttatttgcaagccagctgagtatatcagtattcactgtaataatgttctcttgatttatttcccttagacccgggcttccacaataagaactttcaggcttcttgatttgggagggaaatatcgttttatatcagagagttcacctggtgtatttctacaggtacatactctccagtttcacctgaataatttgagaaaagttgttttggttatcagagctttgtggccatgttatcttaccttatctgttcccctgcgatataatggtgattggtgaagatgttttccatcacaacctgttctttaataaaacatttattagaatcaggaatcgggattcgggaccattcagtttaggcttcagtttattgtatgttactctatggttaaacatcccagtggtctaatgtgtggatatgccagtatgtgcagtttggtgtacctcttgcttttgagcacacgctttttatataacatgcaatggttctatatagaactggtcttctagagaggacatagcattaaagataggatgccatatattgttgctttattcgttcatctttaaattcttgaattaaattgaactgctcaaggttttgccaatccatgtgagctgtctcagttatgtaaaaaggtactccatagttcatttgttacatatggaagtaggattttattaagattttttctgcaagcctatatgagagcataatatacaaggaagtgaatgttgagatctcatcattcttttcatatttgatctagtcatatcatattatttattatgtttgctatgacattttacccttacagatttcttaaaaaatgcgctgtttcctgtagggttcacttgtttatggaaggcacggccaagagatttacagagcaaacttaggtttggatatctgcaaggaggtacaatcatgatgccaactaattgtttcttgttttctactatcaggtgtgcttttgtggcagtataattacttatatgttacatcagatctgcactttatcattgaaatgttaatattttacgtactatttctttatcaggataattttctgggcatcttattgagactgattgagtttgttgaaacttttctcttctctatcattgattttggattttttggatttatgaaatgtgttcgctttggtaatgtgtctcttttttgcatgttaacatttgttagatgtcatgttgatgtgtcttttcctccatttgcaggcatttttgtactccttgaagtatagtatacctcttgttgcataccatgaggaacaatgtttgaccctctttgaacatcctttggttgatttgttgcacacaatccactatgagaccaaggtctgatctaaagatatttgctacgcaaacttatcttttcttcctttttaacaatggtcggcagctgagtaaatgttaaattctcttcataggtaaaagtggtgccttcagttgaggacctcttggggtattcatcttttcaggtttgtctatccgtaactttggcatgcaaaagtttacatatcatatctgttaaggatagtatgcctttctaccttactgtgaaatgcattagtatatattagttgaacaatttttgaagtaacactgcgatgtggtaaaagagcagctgttgctgggaacttgtgatatagcatgaggacccttccaaaatagacagaattgtagttgaattatccacattatcgtcacgactcgagtccatgactggataaccactgccggaactagcaatagcggtagagctgctattttctgaaagcctttctctattagcattctggaatacagacaaaaatcttccattctaatcactgcagccactcaaccagtagtgttaaatgtagtaattcctgatgtatgctcccttcttggctgtccaacataaaaataaatccataaaaagttaagctaacccataggagggcttacacaaatctcttgaagatggggtttctagaatatggctagaaaactactccctccgtttcacaatataagtcattctagtattttccacattcatattgatgctaatgaatttagataaatatatgtctagattcattaacatcaatattaatgtgggaaatactagaatgacttacattgtgaaacggaggaagtactatttaacaatcctcggtgaatcttcagtaagtcaaccagatagatatttagaccagttttatttggattggagttacacaatttatttgcacgtgcagaagttgcttttccttgacaaagtggatggggattcatctgtactgagacagcattggtcagaactaacacaaggaagagcacgtgttatcaaagcgcattcaagtatgattgagattgttccacttaatgcttcaaagggtggtggtataaggattttacttgatcatcttggaataactgaagatgtatgtatctgtttccatcaaagaaagcatttacctttttcattttgtgcgtaattttgctctctagattgtgctctcttagaagggaacatcgccgctaacaatatttttttttcttttacaaaattgtttctcctatgcagtctgatcttgatgctgtgggagactacacaagatggctaagcaacatatttacttaaccattcttaagcaaaagcttggtgataagcttgagataagaagaaatgacatgcatatgtgatgcacaaaaaggaaaacaaacaaggattccacattggacatgtctattttgaagcatgtaagaaaacaaacttcataccaccgtccttttgggctggaagagaaattactgtacccttaaacttttgaaagggatatgggtgtggatggaaagtttgctacttccttcaggtaatgtatttttttaaatttagattacgttactctatttacattggattgtgtgagaaccatttgtccttttgtttaaatttaaatagcatgaaactcatccttttgttgttcacacttcacagatctcatttatggaggtgtgttggaaataaaatcagaccagcccatctgtgatgtcaagaaaacaaacatcaagaaagtgcaatttgcaactagtgaaaattttatgtgagactattagtgttcctttgctctgagcaaacgtgtcaaattcatgccaattttgtttttctgtagaatacctgtatagctgcgctgcacaaagcattgctagttgttgctcgatcatgtaatgcaagagtactctagttcccagctgataggattttgcttattagctagctgtatttcattccacccgtttttagtagttgaatttcaaatggatggacttaaggaaatgtaagaagccaggttgatcccagaagaaaaaaaatagttgagtttccttgtgaaaaggagcagtacaagcgc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0227000, RefSeq:Os02g0227000