Os02g0227400

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Revision as of 02:21, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0227400| Description = Poly(A) polymerase, central region domain containing protein| Version = NM_001052887.2 GI:297598867 GeneID:4328790| ...")
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Gene Name

Os02g0227400

Description

Poly(A) polymerase, central region domain containing protein

Version

NM_001052887.2 GI:297598867 GeneID:4328790

Length

5343 bp

Definition

Oryza sativa Japonica Group Os02g0227400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:7174012..7179354

Sequence Coding Region

7174014..7174061,7174084..7174152,7174270..7174347,7174821..7174928,7176070..7176132
,7176213..7176374,7176801..7176914,7176993..7177055,7177168..7177500
,7177579..7177743,7177892..7178497

Expression

GEO Profiles:Os02g0227400

Genome Context

<gbrowseImage1> name=NC_008395:7174012..7179354 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:7174012..7179354 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggcgggatctttcgtcgcggtcagggggaagcctcggtcgtccccgaagcggatccgcccttgtctctggccatgccgaccgtcgccgatctccacaagacggctgagttggagaagttcttggttgaagccggcctttatgaaggggaggaggagtccgcgaaacgggaggaggttcttcgggagattgatcagatagtcaaggaatgggtgaagaaggtcactattcagaaaggatatagtgagcaaatggttaaagaggcaaatgcagtccttttcacttttggatcttacagactgggggttcatgggcctggagcagacattgatgcactatgtattggaccctcatatgtgaaacgagaggaggaattttttgtcatgctatatggcgcattatcagaaatggaagaagtgactgaactgcaacctgtacctgatgctcatgtaccagttatgaaattcaagtttcgtgggctaccaattgaccttctctatgccagtgtatctcttccagtaataccaccagattttgacatctctcaaggatctgtactttgtgatgttgatgaagcaactgttcgaagtctcaatgggtgcagggtggcagaccagattcttcgacttgttccaaatgcggagatcttccggaaaacactcagatgtttgaagtactgggcacagagaagaggagtttattctaatgttactggtttgctggggggtgtcagctgggccctattggttgctcgtgtctgccaactttatcccaatgctgtgccaagtatgctggtttcaagattcttcagagttttcacccagtggcagtggccaaatcctgtgatgctttgtgccattgagaacgatgataaccttggctttgctgtgtgggatccacgtaagaatcctcgtgatagatcacatgttatgcctatcatcacgccagcatatccatgcatgaactctagttacaatgtttcaactagcacattgagggttattatggagcaatttcagtttggtaataagatttgtcaggaaattgagcttaacaaggctagctggagttctttgtttgagcctttccaatttttcgaggcatatacaagatatctagtggttgacattgttgcagatgatgatgatgatcttcggctttggaagggatggattgaatctcgattgagacagctgactctaaagattgagcgggacactaaagggatgctgcaatgccatcctaacccatgtgaatatgcagatccttcaatacagtgtgctcactgtgccttctacatgggcttatcaaggaaagagggaatgaaaatacgtggtcaaaaatttgatatccgtggaacagtagacgagtttatgcatgaaattggaatgtatacacagtggaaatccgggatggatctagctgtcactcatgtccgtaagaaggagatccccctttatgtatttgaacagggctgccagaaaactcgtccaccaacgccaatatgtgcagagcagcaagaccagtctgataaaaatgactctgaagtttgcacaacgacagcatctctggtgggtcagctcaagcgaaagtatcattctgttggaggtgctgacgttgactcattcaaatctgttagaagggcttcagttagcccggcttgtgaggaagcatcaattcagttgcatgatgatgcaaattttggactgactaattgctccacttcaccacatggatctgaggggtccactgtatcaggcaacagctgtgcagcagttggcactattggtttggttgatgaaactagctga</cdnaseq>

Protein Sequence

<aaseq>GGIFRRGQGEASVVPEADPPLSLAMPTVADLHKTAELEKFLVEA GLYEGEEESAKREEVLREIDQIVKEWVKKVTIQKGYSEQMVKEANAVLFTFGSYRLGV HGPGADIDALCIGPSYVKREEEFFVMLYGALSEMEEVTELQPVPDAHVPVMKFKFRGL PIDLLYASVSLPVIPPDFDISQGSVLCDVDEATVRSLNGCRVADQILRLVPNAEIFRK TLRCLKYWAQRRGVYSNVTGLLGGVSWALLVARVCQLYPNAVPSMLVSRFFRVFTQWQ WPNPVMLCAIENDDNLGFAVWDPRKNPRDRSHVMPIITPAYPCMNSSYNVSTSTLRVI MEQFQFGNKICQEIELNKASWSSLFEPFQFFEAYTRYLVVDIVADDDDDLRLWKGWIE SRLRQLTLKIERDTKGMLQCHPNPCEYADPSIQCAHCAFYMGLSRKEGMKIRGQKFDI RGTVDEFMHEIGMYTQWKSGMDLAVTHVRKKEIPLYVFEQGCQKTRPPTPICAEQQDQ SDKNDSEVCTTTASLVGQLKRKYHSVGGADVDSFKSVRRASVSPACEEASIQLHDDAN FGLTNCSTSPHGSEGSTVSGNSCAAVGTIGLVDETS</aaseq>

Gene Sequence

<dnaseqindica>3..50#73..141#259..336#810..917#2059..2121#2202..2363#2790..2903#2982..3044#3157..3489#3568..3732#3881..4486#atggcgggatctttcgtcgcggtcagggggaagcctcggtcgtccccgaagcggagcggcggcggcggcggcgcggatccgcccttgtctctggccatgccgaccgtcgccgatctccacaagacggctgagttggagaaggttatttatctatccactgttagtaattgattatgtgttgcggcgtaggtgtatgcatatgttatttactagtgatagatgttgcttttgtgtcactaagaaaactttgcttttcagttcttggttgaagccggcctttatgaaggggaggaggagtccgcgaaacgggaggaggttcttcgggagattgatcaggtaattaagttgcttccactcttacttgctatcaatggctagtgctagttatttgttaacccaatgtaacttgatatctctgaatattatacgagttaggcggtgggcgcagaaggggatatgtaattatcgcttaaattcatgcactttgttgccggactttgcttaggcagcattgctttcatgcgcttgtgttgtttcggttttatattattctaaccaaaatgatttactgtgcatgaatgtgttgatgcctgcgtgagtacgatataccaattgctagtgcttcctctggggcacaaaagtcctaactaccaatatatgaacaaaatattcttgatttggagcttgccattacctgcgcatggtaatgcagattaactttgtatatgctcacatgttgttttctttgtataagaattagccctttcttgttgttttatgaggtcttctctgcgtctgtgatattgcagatagtcaaggaatgggtgaagaaggtcactattcagaaaggatatagtgagcaaatggttaaagaggcaaatgcagtccttttcacttttggatcttacagactgggggtaaatgcttctttttgttcctttttccttctaccacagttaaatgatcatgttgatgtttctttctagagtgagtcaagcacaaccaattcgttatcacctgaaattgtcagtctttttagcttccatttagatatatatacaacttgaatataactatggaagtactgttgttgctgatacttggtttcttgatttgttcaagcagaataacataccctagcttggttctttggagctagcaactattttcaaattgtgcagcttttactggattgatgatagactggagtagaacaatatctgataattattatttgagacaagagctgtgtagaaagaatttagagtctgttcatttgtggttcacaatctattgcataggtagtagatgctgcttggttgatggtagcttttttcctgtaaggaaacctgatagtgtggacaactcctgttttttgggaaagatccatatattcatttccttccgtttgtccactacttagctgaacctaagcaaaagatgtccaagaggctgacatcaaagaacaaataacacccataaaaaataaagaaagaaagaataaaaaagtaatcttcagtggataagaagaaatacgattcttatttcgacacaaccacccaagggtagagaaagaccttttgcaccaaaacagaaaaaaccccacaaacgaaactagctccatcacgtactaatgtattttggaagctcttcctatggtttctataactgattaataactagaaatctctcttgtccttcactggataggtctaaaagcctaacatgccaaaacaggaataaaatttgctatatttatgcagtttaaagtttttcatccttttctctaacaatacattcctaatatactgtttagtgcaataataatctcacaaattgctgagaatcattcctggtcatgtttggcacaaataaaatcatagatacctattaaagattattaaaccgccaaaattgaaaagtggtgtttctgtttatcagcgggaactcacggtaacaagagtgtgtatttaataatattttttggttgctgtaagtactttcctagtagatcaattttcctttgtgtactttatgaatagtggcctcttttgttaggttcatgggcctggagcagacattgatgcactatgtattggaccctcatatgtgaaacgagaggtgaagtcttctttttgttgcatgctgtctatggattacttaggtcttcatgatggacattaacagtattatttctccaggaggaattttttgtcatgctatatggcgcattatcagaaatggaagaagtgactgaactgcaacctgtacctgatgctcatgtaccagttatgaaattcaagtttcgtgggctaccaattgaccttctctatgccagtgtatctcttccagtaataccaccagtaagttttcatttcctaggatttcgtacatgaactgaaatgcatgctatgcataataacacacgcttgagatggtgttttatgattgcctaatccaacatctgttagtttgcccatttccattctcttcattggttgcctatcccattagtttctgcaactatggatggatctgctatgttgaaactttttatcaaccaatgtgttgactatgtaaggctgctatttggaagtgttgttgaaggacatatataatgtctaagctaactttaatagcattagcagctatagcctataggtgacgccaaaggcaaaagttaatttgccagcttatacaatgtttacattaatctgtatggtttacttcatgagggagttttaacttgttaaattgtatatttattattttttaatgtaccattgcaggattttgacatctctcaaggatctgtactttgtgatgttgatgaagcaactgttcgaagtctcaatgggtgcagggtggcagaccagattcttcgacttgttccaaatgcggaggtaatttaattatgatatcaccatttctcttattatacagtccaaaccatgtcattgtaataaatatatgctatgtagatcttccggaaaacactcagatgtttgaagtactgggcacagagaagaggagtttattctaatgtaagcctggttttatcatctatgatacacttaaatgtgtttgtgcttggatcaaaaccattagcatcaaaaggtgctgaatcgttatgacgccaaatggtttccttgttaggttactggtttgctggggggtgtcagctgggccctattggttgctcgtgtctgccaactttatcccaatgctgtgccaagtatgctggtttcaagattcttcagagttttcacccagtggcagtggccaaatcctgtgatgctttgtgccattgagaacgatgataaccttggctttgctgtgtgggatccacgtaagaatcctcgtgatagatcacatgttatgcctatcatcacgccagcatatccatgcatgaactctagttacaatgtttcaactagcacattgagggttattatggagcaatttcagtttggtaataagatttgtcaggtgcattatctatgcctcaactttatgcctcagagcactaaattctgcatatggtctcattgcctatctttgatgcaggaaattgagcttaacaaggctagctggagttctttgtttgagcctttccaatttttcgaggcatatacaagatatctagtggttgacattgttgcagatgatgatgatgatcttcggctttggaagggatggattgaatctcgattgagacagctgactctaaaggttgctgtattgtagtagcagtagtttcttattactcctatatatggataaactacaatttttatattatttgaagtgaacattaaaatgaggtctatgaatattccatacttagaaacttatgcaagtttgtctttctaacatgcagattgagcgggacactaaagggatgctgcaatgccatcctaacccatgtgaatatgcagatccttcaatacagtgtgctcactgtgccttctacatgggcttatcaaggaaagagggaatgaaaatacgtggtcaaaaatttgatatccgtggaacagtagacgagtttatgcatgaaattggaatgtatacacagtggaaatccgggatggatctagctgtcactcatgtccgtaagaaggagatccccctttatgtatttgaacagggctgccagaaaactcgtccaccaacgccaatatgtgcagagcagcaagaccagtctgataaaaatgactctgaagtttgcacaacgacagcatctctggtgggtcagctcaagcgaaagtatcattctgttggaggtgctgacgttgactcattcaaatctgttagaagggcttcagttagcccggcttgtgaggaagcatcaattcagttgcatgatgatgcaaattttggactgactaattgctccacttcaccacatggatctgaggggtccactgtatcaggcaacagctgtgcagcagttggcactattggtttggttgatgaaactagctgacctggctgcttgatgcccaatgttgaaaatgatccaattcaaacaattttagagcaggcgccttcagaaagtgtggttgagaaggatgaaagaaaactagaaggaattgaaagcttggcaagtagcaactgtactgaattcatggaggttgcagaagtggtcgctgggacgatccttactgagaatggtgatatacgcttaagtggacatgaagtgatctgaattggccttccagatggaggttttgctttctgtgcactcactctgtactgtgcttatcctttcatttcgttctgcttaaattgactgacctataaatatgaatatggtgttggattggtttgcaaagatcttttcaggtgtggaaccggatgcatcccaggtttgaaagcattcttgaggcatgtcttgtactctcacccttcaaatttaacatttaaaatgttctttttgtctatccggtgttgtttggcaccttctctgccatggaagagctcgtctgtcatgaactgagcaattggcgaggagttgaagagaacaaccacccttgacacaccgaatactttgtcacagattttgtcaggagacggagacttgaacagatggcgcccaaatcttcatcaaatcatacgctgaaagaaaaaaaaggatgcctttcggttgctttcaggataagagaagctctgggattgagaaaccatggaagctcaaatatgaagttcttaggctaggctctggagttatggacttgtggttgtgggaggactgaggagactgagcgagcaccagtgtatcagttaaggtagtgcctttccttggctgctagttaggtctaggtcagtatatttggtagtttt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0227400, RefSeq:Os02g0227400