Os10g0400800

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Revision as of 08:37, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0400800| Description = Similar to Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS) (CM...")
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Gene Name

Os10g0400800

Description

Similar to Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)

Version

NM_001071080.1 GI:115481903 GeneID:4348566

Length

4890 bp

Definition

Oryza sativa Japonica Group Os10g0400800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:13894947..13899836

Sequence Coding Region

13895353..13895406,13895486..13895540,13895755..13895880,13895979..13896045,13896628..13896699
,13896809..13896905,13897067..13897166,13897232..13897316,13897384..13897460
,13897593..13897631,13897706..13897743,13897823..13897913,13898241..13898333
,13898431..13898486,13898783..13898839,13899102..13899200,13899304..13899426
,13899517..13899702

Expression

GEO Profiles:Os10g0400800

Genome Context

<gbrowseImage1> name=NC_008403:13894947..13899836 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:13894947..13899836 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tccactcccaggcagctctcccctctcgccgccatggcggatgtggaggcctgcctcctcgcccacctcaactccggcggcgaggtgccggactcccgctcctacgcctcctccctccgcgtcacccacgacgagctcgaggccgtcatcaagagcctctcggctttccgcattgtcgacaccacggacatcaccaaggagacgtgggtgctaaccgatgaagctaaggggtacgtcgcgggtggctcccccgaagcgcagctcgtcgctgcaatcccaccggagggtgcctccaaggacgtgctcagggagaaattgggatctgtctttgacatcggcatgaagacggctgcgaagaacaagtggattggttttgagaaagggaataaggacttggtgttgagaaaggttaacaccatcaaggatgacttgcaagagcaactgaaaagtctagagagtggagaggttctttctgacaaggtgattgatgatttgaaaagaagaaagcttatcacaaaagagaaatcaatttggtatgccctaaagaaaggaccccagtttgtcgcgaagaggaaaaaactggcaactgatgtgacacaagagcatctcagaagtggtgattggaaggatcttgaattcaaagactataactttggagcccagggacaacctattgccattggttatgtgcaacctttgttggaggtgcgagaggaaatccagaacatctttcttcagatggggttcactgagatgccaactaacaattacgttgagagcagcttctggaacttcgatgcactgttccagccccaacagcatcctgctcgggattcacacgatacattttttcttgaagcccctgccgctacaaaacaattgcctgaagattatcttgagaaagtaaaggaagttcatcaacgtggtggttatggctccaagggatatggctatgactggaaacgggatgaagcagagaaaaacctgcttcgtacccacactacagcagtttcaacaaggatgctatacaagctagcacaagagaaaccttttgcccctaagaggtactactccattgatcgtgttttccgcaatgaagctgtggaccggactcatcttgcggaattccaccagattgaaggtctcatttgtgattatggtttgacgctgggtgatctgattggtgtattggaggatttcttctcgagtctaggcatgtcaaagctgcgtttcaagcctgcctacaatccatacaccgagccgagcatggaaattttcagttaccatgaaggtttgaagaaatgggtggaagttggtaactctggcatgttcagacctgaaatgttacttcccatgggactgccagagggtgttaatgttattgcatggggtctttcactagaaaggccaacaatgattctttacggcatcgacaacattcgagacctctttggaccaaaggttgatttcaacctcatcaagagcaaccctctctgccgcttgggactgcagtaa</cdnaseq>

Protein Sequence

<aaseq>STPRQLSPLAAMADVEACLLAHLNSGGEVPDSRSYASSLRVTHD ELEAVIKSLSAFRIVDTTDITKETWVLTDEAKGYVAGGSPEAQLVAAIPPEGASKDVL REKLGSVFDIGMKTAAKNKWIGFEKGNKDLVLRKVNTIKDDLQEQLKSLESGEVLSDK VIDDLKRRKLITKEKSIWYALKKGPQFVAKRKKLATDVTQEHLRSGDWKDLEFKDYNF GAQGQPIAIGYVQPLLEVREEIQNIFLQMGFTEMPTNNYVESSFWNFDALFQPQQHPA RDSHDTFFLEAPAATKQLPEDYLEKVKEVHQRGGYGSKGYGYDWKRDEAEKNLLRTHT TAVSTRMLYKLAQEKPFAPKRYYSIDRVFRNEAVDRTHLAEFHQIEGLICDYGLTLGD LIGVLEDFFSSLGMSKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLL PMGLPEGVNVIAWGLSLERPTMILYGIDNIRDLFGPKVDFNLIKSNPLCRLGLQ</aaseq>

Gene Sequence

<dnaseqindica>4431..4484#4297..4351#3957..4082#3792..3858#3138..3209#2932..3028#2671..2770#2521..2605#2377..2453#2206..2244#2094..2131#1924..2014#1504..1596#1351..1406#998..1054#637..735#411..533#135..320#gaggggctttttcgcaaaacaacgtcaactaacccacacacaccaccctcaaaccctagccgccgccgccgactccccctcgcgccgtccccgtcgccgagcgccgccgcctccgtcaagcccaagcccagtagtccactcccaggcagctctcccctctcgccgccatggcggatgtggaggcctgcctcctcgcccacctcaactccggcggcgaggtgccggactcccgctcctacgcctcctccctccgcgtcacccacgacgagctcgaggccgtcatcaagagcctctcggctttccgcattgtcgacaccacggtactcctcctcccctcccctcccctctcatctccatctccgaatttatccccgggcctcccgaaccctaacgagctatctgccccgcaggacatcaccaaggagacgtgggtgctaaccgatgaagctaaggggtacgtcgcgggtggctcccccgaagcgcagctcgtcgctgcaatcccaccggagggtgcctccaaggacgtgctcagggtgagatatattctgttttttttttcctaggatttttttttatgtttagctggattgactagctttggtacaatgctgacgcttgtattcgtgcccattttaggagaaattgggatctgtctttgacatcggcatgaagacggctgcgaagaacaagtggattggttttgagaaagggaataaggacttggtgttgagaaaggtaatttaagctgagctcaatgtgcagctcgattgggagatttgtccttcttattgttattgttctttgggtgaaatgcgttccaattttgccaatttgtcagttctttgccacagaggtagaaatcggctgaacctaactattttgatatgcagttgtagatccgtgtttactctaggtctgttgggaatgcattttaagtgtgctcctgttcttttatatatctgtgggcatgataactgacgttttgctccttattaaggttaacaccatcaaggatgacttgcaagagcaactgaaaagtctagagagtggagaggtttgtgttgctcgtcactcttatgtttcatctcacaatttgcattttcattggaaacattcactgaattgtgtattggcataatatgaatggtttcgatgttgcttgttgctcattatccatcacacagttttcattataaatatcacaaacaattcttaggtgcctaagatcgttgactggtttttatcggtgcataggagcccatttacctccactgttccacaaaatattgtgtgttaatctgatacgcattttagtgtgcatccttttaagaataaaacttttttatgtaggttctttctgacaaggtgattgatgatttgaaaagaagaaagcttatcacaaaagagtaagtgcctcttatttgaacaagcacaatcatttttttttgtgctgtatattgcaattatttaactaatgtttacatctcctttaatgtcctacaggaaatcaatttggtatgccctaaagaaaggaccccagtttgtcgcgaagaggaaaaaactggcaactgatgtgacacaagagcatctcagaaggtatttgtgccacttctcaagatggttccttaaattgtgcaggacatgttgctggttgattatatgatctaactctgacatatcatgaacacccatctaaatagaaaccaaccgctccagattgccttttggattacctgatcattagctgttagtctgttacttcatcctatcaaagttttcttgcatcagtattgaactatttcatgtatgatattgctgtgaattgtttgtctttgaatattcatatgcatatggaatgttttgtatgcttcgtcttcacaacttttggaaatttcatttcgaattgtattttctgtcttgaagtggtgattggaaggatcttgaattcaaagactataactttggagcccagggacaacctattgccattggttatgtgcaacctttgttggaggtggtttttgtagctccagctctttgtatagcatttctgatagctaaatataacttgaaactaatggtgtttgattcaggtgcgagaggaaatccagaacatctttcttcagatggggtacagtaaaatagtttttcgttactttcacttagtatgggaaaattaattaattcattgtatctatgaaacaggttcactgagatgccaactaacaattacgttgagagcaggtgtgttataatgtttatgctccacaaaatgggcatagtacactctccgtactctgaagtggtctggttgttccagttgataatgatgtgtaaataaaataatattaaaagcgattgctatttctttgttagcttctggaacttcgatgcactgttccagccccaacagcatcctgctcgggattcacacgatacattttttcttgaaggtaaaggtcctgtcagtcttaagatcaaagctgtatgtacactatattaattgttcaagttctgcagcccctgccgctacaaaacaattgcctgaagattatcttgagaaagtaaaggaagttcatcaacgtggtggttatggctccaaggggtatgctctggtgtatattgtgcagcctaacgaaaaaatttataatacaatatagccttttgcagatatggctatgactggaaacgggatgaagcagagaaaaacctgcttcgtacccacactacagcagtttcaacaaggatgctatacaagctagcacaagaggtaaagtaactgacagatggtcctttttcagtttatagttctacattaagttttataatcttagtttaattataccagtgattgtgatatcaatttgtttttatgttctcttgaatgattcatgaggtttattttcttcaataattaccatgaactttcagaaaccttttgcccctaagaggtactactccattgatcgtgttttccgcaatgaagctgtggaccggactcatcttgcggaattccaccagattgaaggtgtgttcttgtttcttgcctatgttttgttctgttgattgaaatctggtccatatcttggatatcatgtggacacagtgaggaagctacttacagttccttctttcaggtctcatttgtgattatggtttgacgctgggtgatctgattggtgtattggaggatttcttctcgagtctaggtgctcaaacttcaactgtcataataatgatgtatcttggttaagttttttaaataatatacaagaacttcctattcaacaaattaacccacgggtgcacattcagtaagatgactaatttaggccgtgtctaaacactactaagagggcggagccatatagtgcatttgtacacaagtcttcgaaaatttgctgttgatttgccaccatggtgataactgttgcttgagtgatgccttgttcatgggtgcttgtattgatctgaataatgctacatttctggtgtaaaaccacgcactaatgcagactctgctggttaatgataaatgatgctgtgctttatacatgggaacacaagagaaccattatatttttttgcctattgcatcatctctatttagattgtgtattgccaagataaatactgtatttcattatgtatgttgcctacttttacacaactctaggcattcagtcattcacatgctatacaattgaacttcctttatatgcctatattctctcttgtcctttctaaattcagcagtcctttttaaattggaaaatttgtctgccttttaggcatgtcaaagctgcgtttcaagcctgcctacaatccatacaccgagccgagcatggaaattttcaggtgacagctttgattgctggcttcatgattcttctagttcatgaatgaactttttttcacaatgtgtttataaaccattcttgtgtttcttttttcagttaccatgaaggtttgaagaaatgggtggaagttggtaactctggcatgttcagacctgaaatgttacttcccatgggactgccagagggtgttaatgttattgcatggggtctttcactagaaaggtataattgagataagctcgaagtgaggtttttcttatttacatttacctgttaattttggcctattgtcaaaatcctctctttggaattcttgtttttttcataaacagtaacaataaaacaaatcttatactaattgaagtgtatgcaatccttatttttggctggactaacaattttaagaaatttgttctgactatactgttttgactaggccaacaatgattctttacggcatcgacaacattcgagacctctttggaccaaaggtattgtgctactaatatgcagagctttctcccgttaacatgatcttttgttctcattttctgatttgtttttttccaggttgatttcaacctcatcaagagcaaccctctctgccgcttgggactgcagtaaaaccttgcaaaagttggttggaagtgattaagtaacaagatttgtttagttgatcagtggttgaacgtgaagagatcatttctggcttaccttgaaacaccaatacatgtgcatttagcagaggtttttgtattacagttttgagtgatatgagactaccagccaatttttgtgtgtgtccatattcgaatactttgatacattttaattgagcacatccaatgtatgaagtggtcatctgccgctgcggttgcttgaatcaaaatatggaccattgttttcttttctttgacaaacttggcgctccaaaaactgttgttgagaagtgtcatcaaacaggatgtaatagttatgatactgatctaagattaataatatctgctgaagctgatgcctttcacacctc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0400800, RefSeq:Os10g0400800