Os10g0400900

From RiceWiki
Revision as of 08:37, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0400900| Description = Colon cancer-associated Mic1-like domain containing protein| Version = NM_001071081.1 GI:115481905 GeneID:4348567| L...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os10g0400900

Description

Colon cancer-associated Mic1-like domain containing protein

Version

NM_001071081.1 GI:115481905 GeneID:4348567

Length

8780 bp

Definition

Oryza sativa Japonica Group Os10g0400900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:13900843..13909622

Sequence Coding Region

13902960..13902996,13903583..13903731,13903813..13904072,13904518..13904671,13905252..13905361
,13905441..13905528,13906136..13906447,13906527..13906601,13906723..13907264
,13907641..13907749,13908418..13908597,13908948..13909109

Expression

GEO Profiles:Os10g0400900

Genome Context

<gbrowseImage1> name=NC_008403:13900843..13909622 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:13900843..13909622 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tatttgttgctttcagtgtcttcattgctgttctcaggcaatcagatgcaaggaggtttgggtagccctggtgctctgtctcatgcttatgtacaacatcctcctctacgatgtgacataccagacatacgtgggctgttttatgatgatgctaataagttccttatcgctccaactgctgatcggatattatactggaagatagttccatctactccagctggacctccgaactctgatcctgtaaatgatggacctgttttatcagttcgatattccctggatctgaaagccatagggatacaacgatccaatcatgaggttgaatttataaatagggaaacaggacaaacctgtaataaaaagtgcagagctgattctgaaactatacttggctttttttggacagactgccccacttgtgatgtcataataataaaaacaagtggcctggatctgtttgcttatgaacctcaatcaaatgctcttcacttggtagactcaaagaagatcaatgtgagctggtatttttacactcatgaaagtaggttgattcttcttgcttcaggaatgcaatgcacactatttactggatatcagttttctgctggtgggattgtcaaattgcctaagtttgagatgacaatgactaaaagtgaagcaaacaacaaacctgttctagctgctgatgatgttcataccgtaacagtctatggtaggatttattgcttgcagcttgacagagttagtatgacattgaacttgtatcgtttctaccgtgatgctgttgtacaacagggtactctgccaacttattcaagtagaattgcagttagtgcggttgacaacataatcatggttcaccaaatagatgcaaaggttgtcatactatatgatgtttttatggactcttatgcaccaatttctgcaccactcccgctgcttgtgagggggctgcctagcaataataagcaatcagctcaacctccagatagccaatctagtgcatatggtgggactctctatggagaaggttggagctttctcattcctgacctcgtctgtgatgttgagaacgggctcttatggaaacttcatttagacctagaggctattgccgctagtacatctgatgctcctttgattctggaattccttcagagacgaaagtctgaccctagcatggttaagactctaagccttgctatagtccggactatcatcctggagaggagaccaattactatggttgcaaaggcaatggatgttgttcttgattcctattctcgtctgatgaaaatgggaggtggtcttcctgcagttaggagaacatctgagcaaaaccaacagcccggtgttcagcccggtgtgaacccagattcagcaagtggggatggaaatagacctgtgcagtcaaattcagaagttgagcatggaattgctaacctggcagaacatgtagataggacactgttaaatacatcatctgattctgatgatattatcgatgcatcaggagcatctgatgctcctgacagaaaaccacaagttttggggcaggatagcagaccattggcttctggtacatcaacgcagcatggatcacatgttgctagtgtggcagtttcaccaagtgaaatgtttgagtctgtgtttgtacttgttgaagacgaaatgatggctgatcctgcgtatcttatttctatcatcatggagtttctacgaagtgtctcaagagctgggttgaaggctcctcctaacctttttgtgatgatgacaacactgctggcccgcagcaaccgttatcctgaaatagccttgtttgtatccaacaagatcctagaaccctccaaggaacttgcgatgcaactcatggaattaggtcaacaacactctccgacaaggaagctgggcgtggacatgctgagagagcggggcttgcaccatgactacgtcactgcgttactgcaagacggataccacctggaggctcttcgctacgctagaaaatacaaggtaataactgtgcagcctgtcctgttcttggagaaagctgtggccataaacagcgcgcagaacctcgccgccatgctgagcttcttctccgagttcacgccgaccttcaagacgacgtcggactacggcagataccggcatatcttgtctgagatgatctga</cdnaseq>

Protein Sequence

<aaseq>YLLLSVSSLLFSGNQMQGGLGSPGALSHAYVQHPPLRCDIPDIR GLFYDDANKFLIAPTADRILYWKIVPSTPAGPPNSDPVNDGPVLSVRYSLDLKAIGIQ RSNHEVEFINRETGQTCNKKCRADSETILGFFWTDCPTCDVIIIKTSGLDLFAYEPQS NALHLVDSKKINVSWYFYTHESRLILLASGMQCTLFTGYQFSAGGIVKLPKFEMTMTK SEANNKPVLAADDVHTVTVYGRIYCLQLDRVSMTLNLYRFYRDAVVQQGTLPTYSSRI AVSAVDNIIMVHQIDAKVVILYDVFMDSYAPISAPLPLLVRGLPSNNKQSAQPPDSQS SAYGGTLYGEGWSFLIPDLVCDVENGLLWKLHLDLEAIAASTSDAPLILEFLQRRKSD PSMVKTLSLAIVRTIILERRPITMVAKAMDVVLDSYSRLMKMGGGLPAVRRTSEQNQQ PGVQPGVNPDSASGDGNRPVQSNSEVEHGIANLAEHVDRTLLNTSSDSDDIIDASGAS DAPDRKPQVLGQDSRPLASGTSTQHGSHVASVAVSPSEMFESVFVLVEDEMMADPAYL ISIIMEFLRSVSRAGLKAPPNLFVMMTTLLARSNRYPEIALFVSNKILEPSKELAMQL MELGQQHSPTRKLGVDMLRERGLHHDYVTALLQDGYHLEALRYARKYKVITVQPVLFL EKAVAINSAQNLAAMLSFFSEFTPTFKTTSDYGRYRHILSEMI</aaseq>

Gene Sequence

<dnaseqindica>2118..2154#2741..2889#2971..3230#3676..3829#4410..4519#4599..4686#5294..5605#5685..5759#5881..6422#6799..6907#7576..7755#8106..8267#ccgattccccaaacctctcctcctcgtcgtggacctgccggtggcgacgccgacgagctcccctccccaccgccgccgatccgagagcctccacgtcccccttgccggcgcggctcgagcccgggagcggaggagggcaagcgtccccggcggcgtcctctggtatggtggcgtggtgatccggccggaggagcctggatgaaggagaggaacccggcggttgcatcctccgcgctggcccggatcctcgccgcctgcgcgtcccaggtgccgctcctctcgctcgcctctcggtctctgtgccgtgattagggcgattacatcctctctctctctctctctctctctctctctcttccccatcgaatccatggatgttagttgctgcgctggtggattccggtggagttgtgcggtttccccgcggtggatgcgggggtttggtttgacctggattgggaacgggggtagcagatgccaattcattgtaattggtgtccgttcatgagttcatccctagttgcaagctaggagtagttcacttcatatgtaatttgatgccactagtgtgtcgtgaacttttgttcttgctcattagaagacctgcgtgtaagggagcagtttagtcatggttgtagttgtttggagacctgcgtgtgacagcaagtagcccaatgcctacctaaaaagcgggaagaattccgaaggattttgcacctttgtgaacgaagtcagaacatcatttgcaatccacagcactatttttttttaaaaaaaattcaattgcattaattgtgaaaacatttcaaaatgctagctccatctagcctggtgaagctgataggataatcaatgattatattcttacgagccgctcttgtttttctatgacgtgagtgttctgtttctattttttttcttgctatgtaatgcaggcaaaagattatgggaggtgcatagcagaaaaggtccctgagattgaacaaaatatgtgtgctaaggagtttctagcactcagatcatgcatgcagactgtggtaatttttttgtcattaagcaaacagggtgatcccataaaatcatgctattacatccatatacttaagtaaccaatttaattaaatgcaaagggccaaataactgtccttatgttggtaactggagtttgtgttgctattacatccgtatacggcgcagatgtccagttcggtatatattgtagcttttgttgcagcaggaggtagtgcaataggggctctagttggtaaaatatactatgggcagttatttggtaattattggcgtcaatactgaagttgttagggtgcatgataggttgctacttttccatcaaaagaacgaaataaaatacacttctccagactcatcttttctctcccctctggagatctgtccctactctctattctatttctagttttctacccaaacaaactaaggtccgtgtctgccccccaaagttgcatcttcctcccatctagaaattgaccctgttttcctcgattctgtttctatccaatggattatgacagagtaaatatgatggagaaagaggcttgaatgcatggattaaaggatcagggaactgggagaatgatagatagagactagggaaaatacgactttagatgggatatatattcatttcatcctttgcatcaaccgcatgcaatttgtcttccttttagagtctagtccctaacaacttaatgaaaatgattgatctaatagagttatgctttcaacagacagattatcatgcattgcacctaagacctaataaaatgatagcgtctataaacacctcctgaattgttgcagctgttgtggtcctggcaatgcagttgctgcattgtggacattgaggccataatactatgaaacatacataatggataaatctgcattgttttgtaacttaacgactctttgccatctttaatttttatatgttatttcatgtctcaaaaccgaattaattttagcctaactttaatgatgttgtgatttataccctctctctctctctctctcatgtatcctgaaaggtcaagcgcaaggcttgaagttctggagttaaagctttcggaatttgatatttgttgctttcagtgtcttcattgctgttctcaggttagaatatggatctttattttgtaatcacaacttcataagcggtgctttactatcgtatagttggaaaaagggtcaagtctgcttttagcccttgaactctttcttgaagtccatttttcacactgaattcgaaaaccagatgttgtaaactctcacctttcaaaaccaggcaaatagcaccctgggccacattctatagtggtattcattgctatggcagcggcttccagtagtatagacttgtattatgcctgttttggtgacatgacgccacccagttgggtctacctaataggaatttatattagtgaaagccatgtcaatgaaaagcattgtgggggaagtttgggagtgttaattgcttggttttgaaaattgagggtgggaaataactgttttttgagtttagggtgaaaattggactccaacaagagtatggcaaaaattggactctaccctataaaaagaactgcacgagtgcacagcatgctgaaagcagtgccttttctgccatcatgtaatggaagctctatatcaaataaacaacctatctgatctgttttgagtaaatgaataatgctaggcaatcagatgcaaggaggtttgggtagccctggtgctctgtctcatgcttatgtacaacatcctcctctacgatgtgacataccagacatacgtgggctgttttatgatgatgctaataagttccttatcgctccaactgctgatcgggtatatgaacatccaattagtagacttttttttctctttttatataattattaacttaagaggtatgtcccatcattacagatattatactggaagatagttccatctactccagctggacctccgaactctgatcctgtaaatgatggacctgttttatcagttcgatattccctggatctgaaagccatagggatacaacgatccaatcatgaggttgaatttataaatagggaaacaggacaaacctgtaataaaaagtgcagagctgattctgaaactatacttggctttttttggacagactgccccacttgtgatgtcataataataaaaacaaggtactacctctgttattttttacttggtgcttagggcatcgacacagtctccagttgtacatgtttgatccttactttttctaatcatatatcttgtaaaaaatataaccacatgaaagtgtttcacataataaatctattaatgccattttcacataccaaatcttaacatttttgtacatattaatgatttaatattttgaggtttgactacgcacattctaaaacgtcatctattttggaatggagagatatggaatgtgttgctgctgcattatcaatagcactaacttgtcatatagggtcacttgtactatgtgctggctattaataggctgataactttaggaaattgaactgtatttgctgctttagtcctgtacttctgtgtaaaagatcgcagtcatgttcttcagttcatttacaatgtgggtttctattgcagtggcctggatctgtttgcttatgaacctcaatcaaatgctcttcacttggtagactcaaagaagatcaatgtgagctggtatttttacactcatgaaagtaggttgattcttcttgcttcaggaatgcaatgcacactatttactggatatcaggtaatggcacccattctagacaacctgcccctataaaggaataaatttttattttttataaccagagcagaaagccctagctccatattctcattgaacatacaaacaaataatcaaactgaagaactactgcttttctttaaagcaagcttctgcttttgaacttctttcccatctttctatctaacttactttcttcatgcaatttatgctagttatttactaactactgtatatctgaaaatattttggataaagtattggagaaaagcaaaagtacatatgccaataaatatatgggatattattttatccatgaaacgggttttcttattgtgaatcttggctgaatttttctgcaggaaagatttttgtgcgtgtgttagcaacaattcttgaagaattttccttgatcttgacagaaacatctactctacatatagataatttactagggttgaacatttgtatatagagtaaaaacaagactatctgttctaatcaatatttatttaacattcaaacaaagaaaatgtttttgtatttagttgcctgctaaattttactctttttctgtcagttttctgctggtgggattgtcaaattgcctaagtttgagatgacaatgactaaaagtgaagcaaacaacaaacctgttctagctgctgatgatgttcataccgtaacagtgtataaccttttcttccttatcttcttttcagacaaattttcactgaaacatcctataatgttttctcaaatattgcagctatggtaggatttattgcttgcagcttgacagagttagtatgacattgaacttgtatcgtttctaccgtgatgctgttgtacaacaggtctgaactctggactataagccaagttccctatgcacccatcttctttgtgatatattatgatggctatgcatgtagaattgaaaaaaaaaagaaattcaatgctgcaaattttgccggtactaccattattctaggctatttttgtgaagctgcctgcaatagaagtatcaaatttgcatgctatacatcccatgctgtttttagtctttttttcttctcttccttgaaaattggagaattgctggcaattcgacatattggacctgcctagtttccaggaaatttagggaataaacgtagtgctactgttatatacaataacatggattctaactgggtttatgcttttctcacaaaagttgatagaagaggttaatgcttaagcacaccatgttttgctgaaactgatgcctgcattaagttttactgagttcctgtcacttagtcataagaaaacagcgtcccaagaatttccaaaacttacacccaattttccagtggcactagccatcaaacaggaactaatctattttggccatctagcatccttctttttctgcaacaaagtaatcctaatcccctaactcatgacttgtcatctcagggtactctgccaacttattcaagtagaattgcagttagtgcggttgacaacataatcatggttcaccaaatagatgcaaaggttgtcatactatatgatgtttttatggactcttatgcaccaatttctgcaccactcccgctgcttgtgagggggctgcctagcaataataagcaatcagctcaacctccagatagccaatctagtgcatatggtgggactctctatggagaaggttggagctttctcattcctgacctcgtctgtgatgttgagaacgggctcttatggaaacttcatttagacctagaggtaagagattgctaatggacaattccttgatgccttagtttataattttttgccctgacatgcataactggaattttaggctattgccgctagtacatctgatgctcctttgattctggaattccttcagagacgaaagtctgaccctagcatggtaatttttattgcttttcatatatgatacaatagtttagtttttgccaattacagttactatacaaatcttttggtactttacttctgtagaatccgtaccaactcttattatgattcaggttaagactctaagccttgctatagtccggactatcatcctggagaggagaccaattactatggttgcaaaggcaatggatgttgttcttgattcctattctcgtctgatgaaaatgggaggtggtcttcctgcagttaggagaacatctgagcaaaaccaacagcccggtgttcagcccggtgtgaacccagattcagcaagtggggatggaaatagacctgtgcagtcaaattcagaagttgagcatggaattgctaacctggcagaacatgtagataggacactgttaaatacatcatctgattctgatgatattatcgatgcatcaggagcatctgatgctcctgacagaaaaccacaagttttggggcaggatagcagaccattggcttctggtacatcaacgcagcatggatcacatgttgctagtgtggcagtttcaccaagtgaaatgtttgagtctgtgtttgtacttgttgaagacgaaatgatggctgatcctgcgtatcttatttctatcatcatggagtttctacgaaggtatttcttgttgatttagtgtcgtatataactagctagtaaccattaaactttgtggaatatttgctgtagttaaatttctattcgtggtaacttgatccattgtttatactttatagcatgaaaagtacaccactataaagaatgaccacatcagtgtcatcactagcatcttataggattcgatcagtagactgttttaatgacagtagacatgtattgggcaactgtagccacgagcgaccttcctcttttattttattcacattagtgcatcatttatggtgggtgctcttaagatttttatgcaacacttcctttctttccacaaggataatacaagacaaataacaaaagcttaatttgcattttgcagtgtctcaagagctgggttgaaggctcctcctaacctttttgtgatgatgacaacactgctggcccgcagcaaccgttatcctgaaatagccttgtttgtatccaacaaggtcagtatgttactatggtgttctcacctcattgtaaatgttcaggataacgttcataaaattgtttgtgaacaatgctataagctgagggtcaacatacttaacaaatgactgatgcacaaagttgaaaatgtggtggaaatattcttagcaatttgcgttgcaagatacacaaaaagaaaagaggtggtgttattgttcgcaatttcatttaaaaatttgtgtacgtcttcaagagatagtctttggctctttgcattgcaatcttatatactttctttctgctacttacttttgttcaatctgttcacacctgaactttgtctgatggaagaactcttagatctgactttgtagtataagcctgaactaactaatcatggttgtctaactgacacccccttttggtccctgcgacagattaaattcagcgtgggcaccggatttccgctaacctcgattactaaggtttttgagttttgatgccaccggtggcttaccaaaagctttcccaccaaaatctttttgcatctattcccaaaattagttgtcaccacaacatataccatgcaagacagttctagataacaacatttcacactccgatgttacaagctacactccagctattaatgcttatatttttgttcatttaccaattccttcagatcctagaaccctccaaggaacttgcgatgcaactcatggaattaggtcaacaacactctccgacaaggaagctgggcgtggacatgctgagagagcggggcttgcaccatgactacgtcactgcgttactgcaagacggataccacctggaggctcttcgctacgctagaaaatacaaggtactcttttgccaactggcgcacacgtttctcccatcttgctccaaatttataaaatcactatatcatcatgttcgtatttcctatgcattgcaagtttgcaactcgtaaaaagtgaagttatttactctctgaatttccgttgctcacttcatactagtaaagtggttgcactggtgatacatttttttaggataatggaaatgacttacaaaatcgactatctctgccgatattataggcacacaactactgtaatggcaatacacaaaggcatggaaagcttgcattgcataagaaacgttgtcacatcccattctttaactaactagacatggtgactgttccaggtaataactgtgcagcctgtcctgttcttggagaaagctgtggccataaacagcgcgcagaacctcgccgccatgctgagcttcttctccgagttcacgccgaccttcaagacgacgtcggactacggcagataccggcatatcttgtctgagatgatctgaacaaatttcagtagacagggtgaactgcctgaaacgatttggcacgttttatgcaaatcccgtacagaagaaacttgatacgaggaatggtgtaaagttcagacgatttaagtataattgaacaaatggaacgaggttgctcagtgagacagtgaggattgtgatgaacgaattcgagtttctgcgagcctttcgacactacgaccgaacagaactgctgggaaatccatgacttgcaatgtggtgggtcttttttctgaaagcttatcgtatttattgtggaaattctgaaaactcttcatgtgaaattcctcacttggatggggtatgagatcaagtgtccctggcatgtaggtccaagccaagtatgcagaagaggtcactgtcggatggggtgaggagtggggaatgtttaatttaggtgttttttttctttttttgcagggttttttttctttttataaagactctcatttattgcctatatttactaataagataaaacggtttatt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0400900, RefSeq:Os10g0400900