Os02g0255000

From RiceWiki
Revision as of 02:23, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0255000| Description = Similar to Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic nucleotide-and calmodulin-regulated ion channel 1)|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0255000

Description

Similar to Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic nucleotide-and calmodulin-regulated ion channel 1)

Version

NM_001052995.1 GI:115445360 GeneID:4328912

Length

8967 bp

Definition

Oryza sativa Japonica Group Os02g0255000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:8776057..8785023

Sequence Coding Region

8776426..8777124,8779314..8779550,8779961..8780089

Expression

GEO Profiles:Os02g0255000

Genome Context

<gbrowseImage1> name=NC_008395:8776057..8785023 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:8776057..8785023 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ttttttatttgttgcagttctcttggtcaaaatcttaagacaagcacgtatacatgggagaatctatttgctgttttcgtctcgacatcaggtctagttttgtttgcactccttattggtaatgtgcagacctatctacaatctgcctctgtgcgtatagaagaaatgagagtgaaacggcgtgacacagagcaatggatggcacatcgattacttcctgataacctcaaggagcgaatactgcgtcatgaacaatataggtggcaagaaacaagaggggttgatgaagagggccttctttcaaatcttcctaagaatcttaggagagagataaagaggcatctttgcctgtcgcttctcatgagggttccaatgtttgaaaacatggatgagaagctcttggatgccatgtgtgatcgtctaaagcccatgctgtacacagaaggcagctgcatcattcgcgaaggagacccagtgaatgaaatgctcttcatcatgagaggaaatcttgagagtatgacgacaaatggtggacagactggctttttcaactccaatattatcaaaggtggagatttttgtggtgaagagcttctcacatgggcacttgaccctacttcagcttcaaaccttcccagctcaaccaggactgtgaaaacgctgtctgaagtcgaagcttttgctttgagggctgatgacttgaagtttgtagccacccaattcaggagactccacagcaaacaactccagcatacatttagattctattcacagcaatggagaacctgggcagcttgttttatacaggcagcttggcatagatactgcagaaagaaactggaggatactttgtttgagaaggagaagaggttgcaagcggcaattgtcagtgatggttcgagttcgctcagtcttggtgcggcgctatatgcttcacgttttgctggtaatatgatgcggatcttacggagaaatgccactcgaaaggcccgtttgcaggaaagagtgcctgcaaggttattacagaagcctgcagaaccgaactttttcgctgaagatcagtaa</cdnaseq>

Protein Sequence

<aaseq>FFICCSSLGQNLKTSTYTWENLFAVFVSTSGLVLFALLIGNVQT YLQSASVRIEEMRVKRRDTEQWMAHRLLPDNLKERILRHEQYRWQETRGVDEEGLLSN LPKNLRREIKRHLCLSLLMRVPMFENMDEKLLDAMCDRLKPMLYTEGSCIIREGDPVN EMLFIMRGNLESMTTNGGQTGFFNSNIIKGGDFCGEELLTWALDPTSASNLPSSTRTV KTLSEVEAFALRADDLKFVATQFRRLHSKQLQHTFRFYSQQWRTWAACFIQAAWHRYC RKKLEDTLFEKEKRLQAAIVSDGSSSLSLGAALYASRFAGNMMRILRRNATRKARLQE RVPARLLQKPAEPNFFAEDQ</aaseq>

Gene Sequence

<dnaseqindica>7900..8598#5474..5710#4935..5063#gggggaacggctggttgcgaagcgagaccgtctcacgataggcaaggtcgagctggagtccacctcccgtcccctccctacggcgtacggcaatcaccgccaccacccgcatcatgcggcgccagcattgaactccgcctctcctctcctctctctctctctctctctctctctctcctctcccctcgcgtctcgcggccttctccgccgccgcttcctcgtagcagcagcttgcagtagcctctctctctctctctctctctctctcctctcccctcgcgtctcgcggccttctccgccgccgcttcctcgtagcagcagcttgcagtagcctctccaccaccaccacctcctccgccgccgtgccagcgccctgcgcccctccggtaagcttttgctcctcctccttcttccctccctccctccctccctccgccgtggggatagctcctgcttagccccccccccccccccccccccgatctacttcgtctgctcgccgcttctcgctcagatcttaatcagtcggggtaggtttcgcggattttggttaggtgggaagctaggctccagcatctcaggatttgggaatgatccccatcgtccctgcgcgattcactagtggaattggtggccctggtggcccgtagtgtgaatatccatgaactgattcggattcagggcaccgggttctcgtcatgtactagttactgttctctgctccgcgagagttctttgttttggctgtttcttcccaacaagcgcacaaaccggttatgttttcggtagttgttgaagctgagcaggaaattgcagctccactttcagctcacttgtaaccgaattgttgaatgctaacgttaccactcgatctatactttatgtggccattacttgttttggtggagtaacttatcttatcgctgttgcctaattacaagctgcacagctgtcatttcacttgtgactgataatttttctattgaaactagcgatttatctacattttgtcgcgttattggacttgatatttctttccttggtctttgggccacacaatttttgtccagtttattgtacttgctatctttgcattttgagggatgctactgatttatggttggtgaccgtcagggagttgatactgcaatgcgacattgaagatttgatccctttctgctgccttgttggtctcgttttgcatgctggtgtttggtggaatccatggctttccgagaggacaaatatgtgaggtcagcttctgtgcactccttgtaccaacatccaagagtgtgttggtgtctgaaacaaaatttttatttcgttcagatttcatgaaggcctactccacatgactaacaatttggttcattttatggcttacagaaatttcttattctactacactgaaaaaatgttgcaatataaatagctgccatgcacattattccgaggagtactttgacctgctatttttttatgtgcagatttcatgactggagatcagaacattctgttggttccgaaaagacagttttagaaggaaggcataatgtgtttgactcgctaatggatagaactgtaggagccttttcattcctagggaattcctcacatcctgaaaccctcaacaaaccagcttctgaggaaaagaagtccaaaacaagagttcttgatcctcaagggccattcttgcagagatggaacaagatatttgttatatcatgccttattgcagtttctgtggacccgttattcttctatattccagtgattgatggtgacaatatctgcttatatctggacaaaaagttggaaatcatagcaagtgtcctgcgattttttacagatatattctatttactccatataatttttcagttcaggacaggctttattgctccttcctctagagtgtttggtcgaggtgtcttggttgaggacacctttgcaatagcaaagcggtatctatcaacatattttctgattgatttcttagctgttctgccccttcctcaggtacatctgcaatttacttcattaatcttttagatctgagcacttaaaacaatgagctacttataagtctggtgtttgttagggtcataaaggttctttgcatagtatattaatatgcattcacttttgtactactttactcatgtacgattttaaggaacgcaatagtaatcagttaaatgtagctgttagatatactggacacttcaaaaaaactttgaagaactattgtcttggctctggtgtaccctaccccctcctgtcacaaacctttggacttacatattcagactggacatttgaagataatgtgtatagatttttcttgagaaatacttccatatatttcaaatttaccaggtcttaaatataatacaatagaaattagttatggtcaaagttcaattttaaggtatcatgtcaatgtgcaaaacgacatgtatttatgattgatctgcagctactgatcgtgccactacaccatggtttgatgaacttccatgctttctagtggccaaattggatagagctgttgtatcataggtgggggattcaattgaatggataatacaaaccagaagataataaaatataggcactgaagatatgtttggtttttattatgcatgaaacatatacatgtttgactcaatcatgcatgcaataagtttttagacaagtaaggatgggaacaaattgggaatatgcattctatgaattattttgttcctttttcatgtgcgggttgttttgagttgcaaaggtagaacaaacattcaagtgttatgtggttgacttgatgtatcattcctaaggatctcttttgtttaagttgtaacagtatttatttttgttatcaggtgctcgtattggtagttctaccccgtctgcaaggctcctcagttatgacggcaaaaaatatattaatggttatagttatttgtcaatatgtacctcggttgattcgaataataccattgtaccttcaaatcaccagatcggctggtataattacagagacagcatgggctggtgctgcatttaaccttttaatttatatgcttgctagtcatgtaagtcttctacatcacaaattacatggcatgctaatttgggccattttatatcttctgcctaattttcattcttggtgataattcagtgaatattgtttgacaatagttctttgcttgtggtcgtgaaagattctacctgaatgaactttagtatttagtttttgggacatagatctacaaagattaaaaaaaatgtcatatggggattcttttttttctcatagatgcgtgtccatgaagaatttatgcttgttagcttcagctttgtcacatcattgaaataaagatcaacatgtttaatgtagatttttcagcacaatagtaccatagtaatatccactatccagtatcaaccatgtttttagtttaacaatctgctctatattgtctgaggcaactatatatcgtatttcgtagtagaaacaataaaatgtgttgtcacagtgaggcatgccatacatacaatatctggctatctgtatatgtggatgagctgatcatatcttggacatatcctcttagcaatcaatggaactgtttgctgaattggatgcccagagtctgagttggattctacacccatgtccgatcccgagtagtatttctcatgtcgaatcagacatatgaatccgagttgggtttgacgcatgttggctttgtggtaacactgtgtttagcttaagttagcctaagtttagggccactttgttactgcatggggttgatacatgaaattgtatcaaatgatattatgatgcttcagggtctatagcatgagtgcaggcccattttaattcttctggataagcgacagccaaaaaccaagttgcgatgtgcatgtacagcctgccccgcactggggttagaacttgcagcctgtcccctgggtttatagagggcatccaacattaccctttctgcatgggcaagtatattggacaccatgttgatgtctgaagaactgattgtctctgttatgggccagggttcatagggataaacactgccaggaggatagcggggcagcgatggctgctaggggtgagagaggacttaggttgagggagactgattctgaattcattgctgatccaaacgatgttacatccatccttacatagatggaaggaagggcccagtctaatcctatccaacagactctaaccaaccaataccatatcatgtaggcgtgtacgaggcggcgatatcattctcttgacaggtgggctgccctggggccttgacctctcagcccaatccccatgacagtcacttaattgctccattataactttcagaaaaaacaaggcatatccaaaatgtctgcaaaagcatctggtacctgtagatatactgcaataaaataaaataaaataaaagatgcatgcctgtgatacgccattcagttcttcataagaggctagtcagtttgcacatattttgttattcatggtcaagatattactaactgatgctttaaatgcttgcaggtccttggagctctttggtaccttctttccattcaacgagaagacacctgttggaaagatgcatgtagtagacatgatggctgtgattcgggatctttattttgtgggagtaatgcagctagaaataacagtttcttacaagatttttgcccgacaaatggaactgacaatgcagatccaactttcggaatttatcttccagctcttcaaaatgtttcacaatcaacgagtttctttgaaaaattgttttattgcttttggtggggtctgcaaaatctaaggtctgtagaaataaccttcgttttattttcccttgaagaacacatacttcaatattgtttctatatagttttttatttgttgcagttctcttggtcaaaatcttaagacaagcacgtatacatgggagaatctatttgctgttttcgtctcgacatcaggtctagttttgtttgcactccttattggtaatgtgcaggtatggaatatatcaactgtcatatttttattatgatcataattggattaagtagttaatattttttatatatgcaacttgtgtggagtatcttttttaatgaaaatagtacactgtagatgtgtttctctgacatgcatgttctctttatctattctctggcatgcatattgtcttttcaatagaagccacaattaacgagttatatagccaattcatattctctttatgtatcattttttctccttaaaaattaaagggttaaacagctccttttttgcaatgctatttacttatattacatgtaatgaaaacaactctgttgtttaaggtgtaatcgggatgacaattaaatgtgtaagcggctcgatttcttcctttcgtaattttctattgcatgtattttgcagacctatctacaatctgcctctgtgcgtatagaagaaatgagagtgaaacggcgtgacacagagcaatggatggcacatcgattacttcctgataacctcaaggagcgaatactgcgtcatgaacaatataggtggcaagaaacaagaggggttgatgaagagggccttctttcaaatcttcctaagaatcttaggagagagataaagaggcatctttgcctgtcgcttctcatgagggtattttctcatacctttgcataatttgctactatgttttgagagaatcctgattcttgtcccatctgggtgtatatgaaaagggttattcttgagactcgcacaatctttcataccttcatcttgagacaacatgcatcttccacgatcaacactaagcccaactgcatgtcatgccaaatcatatgttgaggattgatttcttgccttctatttcccaaggaccattagttagattgttacataaaaacaatttgcatgtggtttgtaaattccaagtttcttgcttattttgaatagctgcatctgtactggttttgtcagatgttagttctggactttctggttttgtgtcagacctttcctcttctgggtcatagtgtaagtctggcagttcctgaagtctaatcagtaatctggtttagtatagccaattaaagtctacaccctccattgcaaaaagattgcaattctagcattcaaattctgtcccaaaaaaaaatgcaatcctatagtataactttgtttcatcaatctaggtcatttcccttccctactaatttgcccccctcactcctaaaattgcaatctttttgggacagagggagtactaaagtactatttttgacagtccaacatttagtgttttttctgccaggccggctgaaagactgaccgaccaaatttcaataagataggaacatttagtgctttggactgtgtctgtgttgagttggtcttggttgtgtgtacacttaagtagcatagtcataccatttagagcatccattctaatttactgaaggaagacaatgggagattgcaatcatgtattatggaatgaacaattcgtgggcattgttttacaaatgtaggccaggactgtaccagttgactgaaagatccatcccttgtaagtcgcctcatttccagcttacctcttggacattgttttaccacgaactattcagcaaagtcagccactcgttgttgtcctctattgagtctaatctatctgaacaaaccagacaattaccctattgtttgtttccttctccatgtattctataaagcgccatatgaatttttagaaaatttgtattgtcagcttctgaatacttgtcaattcaactataaaccagtctacaatatgatcatcaacaatagggaggttctatgactgttcatattgctttggaaatcctgttgccatatcaaagtgcaaattcatgactggttcactgctttggctgctcctttagtgtgctggtgggttttgcatgtaatatggaacatatctttctaatggaccactgaccagtattctgcaaaagacatatctcagcattccgctatgctacttctaggaaaataaaccatcctaactttctagacaaacttggaaacaatgggatcgtatcactttcaacactggagttcctctctgtgaagcatggagaaaggagtttgctctagtatgcttacggcaacaccaattcttaaagttgatatgcaaaactggtttcagcctttcaagacttgtactctactctctatcctggattcctgccacagagctccaactttagtaactctgcaacacagagctgactgcagaaaccttccctatcatttttctgtttaattagcatcacaaccgtgcattgcaacagatccctactaagtatactttagtccagactccagagtatataaataaataaatatcctagaatctactttttatgtggctacatggtgccaaatagcgaatcaaccatcggcgtgtactcgtgcaaatatgattttttttggggggtaaaagtagtagagacaatacacatatacctacatatttgcagccagaaaagatatagagaggggttgagacgttgagtgtagaatgcaccatccactaccaagttaagagtaaaggaatattacttttgaggacctacatatccaatataggccgtgtttagttgcaaaatttttcttcaaacttccaacttttccatcacatcgttccaatttcaaccaaacttccaattttggcgtgaactagacacacccatacttttccaatggaggtcattgatggcttaatacaaagattcctagttagctgataattaccggctatccctttagttaattaatcccttcattctttttctcaccatttgcaggttccaatgtttgaaaacatggatgagaagctcttggatgccatgtgtgatcgtctaaagcccatgctgtacacagaaggcagctgcatcattcgcgaaggagacccagtgaatgaaatgctcttcatcatgagaggaaatcttgagagtatgacgacaaatggtggacagactggctttttcaactccaatattatcaaaggtggagatttttgtggtgaagagcttctcacatgggcacttgaccctacttcagcttcaaaccttcccagctcaaccaggactgtgaaaacgctgtctgaagtcgaagcttttgctttgagggctgatgacttgaagtttgtagccacccaattcaggagactccacagcaaacaactccagcatacatttagattctattcacagcaatggagaacctgggcagcttgttttatacaggcagcttggcatagatactgcagaaagaaactggaggatactttgtttgagaaggagaagaggttgcaagcggcaattgtcagtgatggttcgagttcgctcagtcttggtgcggcgctatatgcttcacgttttgctggtaatatgatgcggatcttacggagaaatgccactcgaaaggcccgtttgcaggaaagagtgcctgcaaggttattacagaagcctgcagaaccgaactttttcgctgaagatcagtaatgtccatactttgctacatgcagaaattgatgcttcagctggtaaaagttctctctcccctgctgatataccatttttcagtatatgattgaattctgtacatagatagaccatttggttccaagccttttggtttatataagataattcgatttaccgttggatcttcatctatacatgtaatatttgtgttgtacatggaatgcatgtattataagcattccacttccacattgtattcttgtactcctgcctctggggaatccttgaaatggaagaccttgtaaatgtaactgatcacgagggcgttgtatgtatgatagacttctttccccctgaatgcaatgtatgatgttattaaaccctccc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0255000, RefSeq:Os02g0255000