Os10g0405100

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Revision as of 08:37, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0405100| Description = Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-)| Version = NM_001071092.1 GI:115481927 GeneID:434...")
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Gene Name

Os10g0405100

Description

Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-)

Version

NM_001071092.1 GI:115481927 GeneID:4348579

Length

5697 bp

Definition

Oryza sativa Japonica Group Os10g0405100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:14181104..14186800

Sequence Coding Region

14181544..14181604,14182851..14183200,14183279..14183414,14183511..14183647,14183746..14183869
,14186098..14186576

Expression

GEO Profiles:Os10g0405100

Genome Context

<gbrowseImage1> name=NC_008403:14181104..14186800 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:14181104..14186800 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaactgcatggacaccgcggcggcggcggcggcggcgccggataccaacaacgccgatccatcaaaagctgctagcaagacaacctattcatcttacccttcaactacaaaaagcggttcatcttggactgtaccttcctataaggatcgtagcgaccttcctactcctaggacagaaggagaaattttatcatcgtcaaatttaaaggcattcacactgagtgaactcaaaaatgcaacaaagaactttaagcccgacagtctccttggggaaggaggatttggctatgtctataaaggttggatcgatgagcaaactcttgctcctgcaaggccagggagtggtatggttgtggccgtcaaaaagttaaaaccagaaggttttcagggtcacaaggagtggctgacagaggttgactaccttggccaacttcaccatgagaatcttgttaaactcattggttattgttcagatggtgataaccgacttctggtgtatgagtacatgcctaaaggaagcttggagaatcatctatttaggcgtggtgcagatcctttatcctggggaataaggctcaaagttgctattggggctgctaggggtttatcatttttgcacgatgctgaaaatcaagttatatatcgtgatttcaaggcatcaaacattctccttgactcggagttcaacgcaaagctttcagactttggtctggcaaaagcaggcccaactggggatagaacccatgtttccacacaagtcatgggtacccgaggttatgcagctccagaatatgttgcaacaggtcgcctctctgtaaaggcagatgtctatagctttggtgttgtgctgctcgagttattgactgggagacgggccttagacaaatcgaaaccagcatcagaacagaacctggttgactggacaagaccctacttgggtgacaagcgcaggctgtaccgcatcatggacatgaagctgggcggacagtaccctaagaaaggcgcccacgctatcgcgaccattgccctgcagtgcatccgcagcgaagccaagatgcgaccccagatgtccgaggtcctggagaagctgcagcagctgcaagaccccaagtacaacgtgacctcaccgcaggttgacacccggaggagatcatcgtcgggttcagttcctaggtcgccgatgcggatgcagccttcgccacggcgcctttccgcctcggcttccccattgccggctgcaggctccccgctgccggcttgtaggactgcgcaagtgcactag</cdnaseq>

Protein Sequence

<aaseq>MGNCMDTAAAAAAAPDTNNADPSKAASKTTYSSYPSTTKSGSSW TVPSYKDRSDLPTPRTEGEILSSSNLKAFTLSELKNATKNFKPDSLLGEGGFGYVYKG WIDEQTLAPARPGSGMVVAVKKLKPEGFQGHKEWLTEVDYLGQLHHENLVKLIGYCSD GDNRLLVYEYMPKGSLENHLFRRGADPLSWGIRLKVAIGAARGLSFLHDAENQVIYRD FKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTRGYAAPEYVATGRLSVKA DVYSFGVVLLELLTGRRALDKSKPASEQNLVDWTRPYLGDKRRLYRIMDMKLGGQYPK KGAHAIATIALQCIRSEAKMRPQMSEVLEKLQQLQDPKYNVTSPQVDTRRRSSSGSVP RSPMRMQPSPRRLSASASPLPAAGSPLPACRTAQVH</aaseq>

Gene Sequence

<dnaseqindica>441..501#1748..2097#2176..2311#2408..2544#2643..2766#4995..5473#acggcgcctactactcctacaacagaagacgagctcgcctcgccgccgccgccatcgccaccaccacccgcagctctcctcgtcgcgtcgtcccgcacctctcgatctccaacgacgcgggggcttgccggcgcggcgcgagttgacgacgactcgccggctgtagcaggcagcagcagcagtagagagacgagacaggagtgagtggtgatcgccgcggttgggtttcttggattgggctgtggctggcgttggtcggaggagccaggaggaggttccctctcgctttgctcgctcgctcgttcgttcttggctgggtttggtttggtttggtttggtctcggttcagatcttctctccaaagattgggattctgttggtaggggggggagggaagccattttcttgtttcgatggacgctcggtagatcggtaggtagatggggaactgcatggacaccgcggcggcggcggcggcggcgccggataccaacaacgccggtgagtgatgcgccctccttcttgggggttggttgggttccattccattgttgtgtgattcgctccatacttgtgaattgaatggcacagacttggcttcttcttgtttctatgtttgctattgttgagttttgcttcccctttgggtgggtgccccctcacttttggctctcccttttttccttcctagtttggtttggttgtctatagcatttggattgttattgttacatggaaaaaggggtgagagtggtgggatttctaaatttttctttctttctttcctacatttctagagttttgctactagggtttagttaccttgttattgatctcaagcctcagatggtctggttatggcaaatgatacatatgcttggtataataatgattggatttggggggaagtcttgaagtaatgtcttgttgtcgtaatagttatgaaccttctaacttgtgtaggaatataaatcgtttccaattagcatttgcttttcgaaaggaggtttaatttgttcctagagtaagtatatttgcgagctgatagataccggattttgtgtttactgttagatgttacaccttcatacagccattgcatattgctaccgcctaccagagagatgttttaagttttgacaccttaggctgaagtatttgcaagaacgaaatcagacataattgaacacacaattgcattgtgttgcaaccaaggtaataaataccgttcttagcgtccgctatagcggtagctgacctctaccgctagcactacaaggtagtggatcaaatatagcgtattggaatttagtggccgttatagcgcttggcaaccgttatagtagtctgctattggcttgttgcgctgctattgctcttaaatgatattcttcatgcatggacaggagaacttaatgcagtgcgccttctctatatcttacttattttgttatcttataatttttatgctatgaaatgtatgagtatcaaagtatgtaacctaaacttattttaagtgaaacttgatgttagcattcatatataatctaaagttatggttactttttgaattccgctattggaatttagtgcctgcaatagcaaccactatccacaatcagctacccgtacactaatccgctaccaaccctctatttgctagtatttattaccttggttacaaataaatcgatttatgcaacagttatccttatgtatatctctctgtttcttgtctggaaagcagatccatcaaaagctgctagcaagacaacctattcatcttacccttcaactacaaaaagcggttcatcttggactgtaccttcctataaggatcgtagcgaccttcctactcctaggacagaaggagaaattttatcatcgtcaaatttaaaggcattcacactgagtgaactcaaaaatgcaacaaagaactttaagcccgacagtctccttggggaaggaggatttggctatgtctataaaggttggatcgatgagcaaactcttgctcctgcaaggccagggagtggtatggttgtggccgtcaaaaagttaaaaccagaaggttttcagggtcacaaggagtggctggtacgtctgctataaaccaactttctaggtttctctgaggtgctacaatgtttcttaattgtgattgatgtgctgcagacagaggttgactaccttggccaacttcaccatgagaatcttgttaaactcattggttattgttcagatggtgataaccgacttctggtgtatgagtacatgcctaaaggaagcttggagaatcatctatttaggcgtatgcatttaactctaccacactattttctaaatatatacgggttcaatatcttaaatttggcagcacattaaatggaattttctgttattttaggtggtgcagatcctttatcctggggaataaggctcaaagttgctattggggctgctaggggtttatcatttttgcacgatgctgaaaatcaagttatatatcgtgatttcaaggcatcaaacattctccttgactcggtatacatgaaaatagctactcattcttgtccttcgaaagtttgaccttttgcaaatgtttttactttaacttttgtttccttttttcaccattataggagttcaacgcaaagctttcagactttggtctggcaaaagcaggcccaactggggatagaacccatgtttccacacaagtcatgggtacccgaggttatgcagctccagaatatgttgcaacaggtcaggaatgatcttacttttgagttcatataattcacaagttggtacagatttattaaatggcagtctgcttactacccttgatgttggtcacttcttcaaaattatgttcaatcagctagaattagagtagtttacaaaaaaggaaaagaagctagaattagagtgttgttaaaccaccttgttggtgctaagcttttattttggtgacatctaaaatgtacagtagttttgaattaacaaatcttgttttgccgtatctatttcaccaaatgacatgctgactgttattgtactatgaccgatagcaaatatttgtgaagatcctttatttgagttatcatcatctcattgtcatatctactaatgtcattttcacacatcaaatcttaatatttattttaaatttattagcaaacgagggatggtttagagccaagtgaatgcgtagaagatgaagacattttccctttcttcttctgccttcttttttttttcccttcttgcctgccctaatctatctggtggcatactcaatctgctcaaagcagagctgaccaactgagaaaaccaattgacggaagacctgctgcgctagccgacatagattgaaggagcagcgagcagcaactcctgtgcgtggcaccacgcgggaggtggaagcagacgcccatgcatgaaggagcaaagtgccaagcagcaccgtgcgaaggaaagcagtgggtctgcatgcggcggaagcaggagtccgtgcaaagaaaagcggcggggccccacgaggaaaatcacccggtgaagaaaaatcgtcaggcgatgagagaagacaagcagcaaggaggaaaactggcgaaaccctagatctaggctctcataccatgttaggaatatagcttgtattgaataatagccccaaggaggcaatatataggagtacaagagaccaaaatacgtaaagagataaactatatatgtaaataaaagactatattccttgacaggcggtagtgcttccagttgagaagccaccggtcctgggttcgaacccaggatttgcacagggaaaaaaaaggacttctcgttggctattccgtattaaatgtgtaatcactacggttgccttcagtaaaatgcatgtgacccacatgccctgggcacccgggtaggcggcctttggggccttttctcgactgggccaggaagagcttcttatatttatcactgagttaagattttgaggtttaactccacgcattctaatatgtcatttttggagtgtggtaaagctgcaagtttccattttcttttttttattattttggacaaacattagggaagtcttatgtgcataaagggattcttttatgctacttgaaatcactgcaagcctgcatttttatctggaatgtatgttgttttcttgtttaatactattacaaaatttgtgttatcctgaaaaattaagttctgcaaacaaaaccctgaattttaaatataaatttctttatttgcacttcaaagagaatctatattgatttttgcctttagtttggacatttaaaatgatttacaacttttgcattatatttggttcctacttcataacaataacaagtaactggaagatacaattgtctttgcttcaagtacaaaacagactttgtacacattacttgctctgaattttgtaagtctcaatgttttattgaaaattggaaacaaaattctggatatttgatttttaccgtgcatgaatctagcagaaaacatatactccctccgtttctaaatatctgacgccgttgacttttttaaacatgtttgaccattcgtcttatttaaaaaaataagtaattattaattcttttcctatcatttgattcattgttaaatatactttcatgtatacatatagtgtttcatatttcacaaaaaaaatttaataagacaaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttagaaacggagggagtatgatctacttgaaaagaatagtcatgccattaggacttgctcttgttggctaatgtatctggtagtggtaggagatagtattattgttggggggcacatgtccttcacctcttagagcggtatgatggggcactaataaaatccaattgtaattaactgctgagatcttcagtttataaattctgttgcaattgtttctcacaatgctcaaatatgatccaggtcgcctctctgtaaaggcagatgtctatagctttggtgttgtgctgctcgagttattgactgggagacgggccttagacaaatcgaaaccagcatcagaacagaacctggttgactggacaagaccctacttgggtgacaagcgcaggctgtaccgcatcatggacatgaagctgggcggacagtaccctaagaaaggcgcccacgctatcgcgaccattgccctgcagtgcatccgcagcgaagccaagatgcgaccccagatgtccgaggtcctggagaagctgcagcagctgcaagaccccaagtacaacgtgacctcaccgcaggttgacacccggaggagatcatcgtcgggttcagttcctaggtcgccgatgcggatgcagccttcgccacggcgcctttccgcctcggcttccccattgccggctgcaggctccccgctgccggcttgtaggactgcgcaagtgcactagatgcacagcctaggatagtttggaacttcgtgctgtagttgtttgtaacctctagctgtatattttgttttgatgttgtgcccaatctgtagttctttgttttgtgaggttggatacatctgttgctgttagactccgatgtgtgtgtaacagggaacgtgattccggcattctgacgcgatcattatttttttttacttgtttcaatagataaatggattctt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0405100, RefSeq:Os10g0405100