Os10g0405500

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Revision as of 08:37, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0405500| Description = Conserved hypothetical protein| Version = NM_001071094.2 GI:297610454 GeneID:4348581| Length = 6865 bp| Definition ...")
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Gene Name

Os10g0405500

Description

Conserved hypothetical protein

Version

NM_001071094.2 GI:297610454 GeneID:4348581

Length

6865 bp

Definition

Oryza sativa Japonica Group Os10g0405500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:14199602..14206466

Sequence Coding Region

14199602..14199622,14200704..14202353,14202462..14202609,14203640..14203780,14203853..14203913
,14204006..14204155,14204276..14204334,14204853..14204987,14205733..14205824
,14205915..14205979,14206451..14206466

Expression

GEO Profiles:Os10g0405500

Genome Context

<gbrowseImage1> name=NC_008403:14199602..14206466 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:14199602..14206466 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaattgcatatttgcctcgctacatcaagtgactattggagtttggccagcaatcaatatccatgtggtaaattccctaaggtatcagttggcgtcacaattccaaggacgagttctgtatcaagaggcagagatgctgctagtaccgctgcatttgagaagaacttgtctcagggaactgatggaagatctagacctcccaaaatggataatgcttcacttcaggtctctccagaagcagcaaaccacggcggatctgctaaagaggttcctaaacctgtccctgctaaggtttctgtatcacaacctgatgataatgcaattgagcaaacaggaaccttttcctttggaacaagaagagaacaggacagtcatcttgatcaattagataggccaccacttgtgagttcccaaggaaagcgtcaagtggaatcagctgataaaaacaagcccaacagtgaaatgctcaggatgaaactgtgggagatccttggtggtacttcacaaaacaaggaggctgttgcctcaccaaatcctgaagatattgagacgccatgccaacctaaaagtcaaattgccaatggaccatcttcaggaagacagaaggttttcacttcacctgttccatataatattaagacaccagctcagtttaatagtcaaacagcgaacaaaccatcctctgatccaattgagtcagactccgacagtcctcaagtagttgaagtaagacctattactcgttcgctggggcgcaagaaagaaccaacaggctccacacatcaggataagagcgggagtgcaaagaaaccattgtctactcatcgttctacacccaagcagaaaatattggacaatgtgtttgccttcaacgataaatgcacacctaaaacagtaggaaaatctgcaaatggtgaatctggcagcttgaggaatcttagaagcttgagtaggagggctaaagttgagccaaagaaggcacattgttcggacaggatttctcataagactacacaggatgatatggaaagaaaggtaccttctaaatatataccatcagagaaaaaaggtgagaaaacaaactccttttcttctttatcccgaacaggaaaaactgctgagagttgttctagaagccctaaaagggagagaagggtgaacacgatggctaatgttggggctcgaaagatgcagttatctgaaaatttactggtcaagactctaaatgatggtgaacacaagctctcttctcctcagcttacttcctttaagagcaagggaaaatgttcttctatatcgcctcaacagaaggagaatgataatacccacatccctgaagcttcagacagaacagcagcaagaaatagttttaactccacaccttctcctgctgctaatccatctcctgtactgaggaagtactcatgggaacatgatgagaatcctgcgataaatggtaaatctggacagaaggatgccagtccgttggcagacagattcagcgacatgccagatgattttgcaagtcctacttttgcagcaaacataaaaatatccccccacagaagtaaaatgctagacgatgacctatttagctccaaatatccaaaaggtgtgaacaggtcaagatcaacttcctttacctcggatccagaatcggagccattggacaaaatggagaaaaccaacgagttacctggcagtgaatctcctaactctcaggaggaaagacagaacagaaaacaaccacatctttcacccctttctcctattgagagtgaaggggctcaaatttctattccaagctttagaaaaggatataaatctcataaatggctttcagatgttgacagccctgataaatcttctattgagcatctgggccgaaaatcacatctaaaagagggtagaaagggcaaaaggcaattaacttcgccaacccattttgccacctctgggacgcaagaaacaatgtcagacaaagaaccagaaaaagtcccagaaaactacctaaccagggcttttgatcagttagtagtggtgctaggaaggttccaaaccaaaatcaagtctgaaacaaggaataaaagttctaagatacttgcagctactggagagataatacgccagcaccttgaaggggttgaggggcagatgcaggctgatgtggacaagctggtcaatgcaggaaaatctaaaaggaaacgtctagagtcaacatttgaagagcaacaagaaaagttaaggattcttcacgagaagttcaaggaggaggtcaaccagcagttgctcggttgcaagaactctgttgaggattttgaggcttaccatgcagaacttaagggagttgctgacaagcaaaaagcctcacacaagaagctccttcaaaatgctgagaagacagtcggcgctcagctgagcgacgcggaaaccaaaatcgctgaggtccagaagagggcacggaagaggatgaagggcctcaaatttgtgctcaaggagctcattgcagaaactgcagattgtaacgggagctaa</cdnaseq>

Protein Sequence

<aaseq>MELHICLATSSDYWSLASNQYPCGKFPKVSVGVTIPRTSSVSRG RDAASTAAFEKNLSQGTDGRSRPPKMDNASLQVSPEAANHGGSAKEVPKPVPAKVSVS QPDDNAIEQTGTFSFGTRREQDSHLDQLDRPPLVSSQGKRQVESADKNKPNSEMLRMK LWEILGGTSQNKEAVASPNPEDIETPCQPKSQIANGPSSGRQKVFTSPVPYNIKTPAQ FNSQTANKPSSDPIESDSDSPQVVEVRPITRSLGRKKEPTGSTHQDKSGSAKKPLSTH RSTPKQKILDNVFAFNDKCTPKTVGKSANGESGSLRNLRSLSRRAKVEPKKAHCSDRI SHKTTQDDMERKVPSKYIPSEKKGEKTNSFSSLSRTGKTAESCSRSPKRERRVNTMAN VGARKMQLSENLLVKTLNDGEHKLSSPQLTSFKSKGKCSSISPQQKENDNTHIPEASD RTAARNSFNSTPSPAANPSPVLRKYSWEHDENPAINGKSGQKDASPLADRFSDMPDDF ASPTFAANIKISPHRSKMLDDDLFSSKYPKGVNRSRSTSFTSDPESEPLDKMEKTNEL PGSESPNSQEERQNRKQPHLSPLSPIESEGAQISIPSFRKGYKSHKWLSDVDSPDKSS IEHLGRKSHLKEGRKGKRQLTSPTHFATSGTQETMSDKEPEKVPENYLTRAFDQLVVV LGRFQTKIKSETRNKSSKILAATGEIIRQHLEGVEGQMQADVDKLVNAGKSKRKRLES TFEEQQEKLRILHEKFKEEVNQQLLGCKNSVEDFEAYHAELKGVADKQKASHKKLLQN AEKTVGAQLSDAETKIAEVQKRARKRMKGLKFVLKELIAETADCNGS</aaseq>

Gene Sequence

<dnaseqindica>1..21#1103..2752#2861..3008#4039..4179#4252..4312#4405..4554#4675..4733#5252..5386#6132..6223#6314..6378#6850..6865#atggaattgcatatttgcctcgttcgtaaacctatcgtgtaggtttccgttggatgattggatcctgaattctgtccgattgtttttgtctctctaaattatggttatctgccgcaagtgttaggctatgttagtgtcgcattccgcagtatttttcacggagttgggttcttctagatagtgagtggagcctggattgtgtattatgtttgtggaagaagatctcttaatgctgagggcacatttaaattgctgatacacaatattggtttgatatgtttgtaatggactgttcctagaatttcactgggggtactaaattgacttgttggacatgcagtctatttaatttgagcctcagtgcagcagtacactgttgcagttatcaatcaaaagcaagttgttagcaatcaaatcatccagcttagaaatttaggtgtggtactgtggttatgtaatgcagctccaccaccactgtagtaatttaaagttgacagttgtagtacaacgatgcagttatttgttactacttttcaatgctagtttcttttccaagcgtgattgcaatattgccatgtgacaatcttttacatgtattgcctgctgaatcaggaaaaagaagtacagatgtatcactaattcacttatgctttggtaggctagttgaggatcagtgtcccttgcccccatgtcaatgcttatttgcggtgttttcgcccttgctgatacagctgtgcttctcacatgtgatggcagatttgaaatttcttcctataaccatgcttgataaagatgtgctttgcaagacctctgtattcatttgctaagcataattttgattctgaaagattgtctcagaccagtagaatcttgtcttatgcagttgtttttctattcaccaggtccaaccttctttagttaatttggtatactattatcccaaaagctgcacctatggaagttgagctgacgaacattcagaaagtgagtagctatttcctctgctaagctgctggatgctttcctttttcatgttatcctttcaccttcagatgttttttcattatagtattaaaaaagttagcatgttatacttttgtaggctacatcaagtgactattggagtttggccagcaatcaatatccatgtggtaaattccctaaggtatcagttggcgtcacaattccaaggacgagttctgtatcaagaggcagagatgctgctagtaccgctgcatttgagaagaacttgtctcagggaactgatggaagatctagacctcccaaaatggataatgcttcacttcaggtctctccagaagcagcaaaccacggcggatctgctaaagaggttcctaaacctgtccctgctaaggtttctgtatcacaacctgatgataatgcaattgagcaaacaggaaccttttcctttggaacaagaagagaacaggacagtcatcttgatcaattagataggccaccacttgtgagttcccaaggaaagcgtcaagtggaatcagctgataaaaacaagcccaacagtgaaatgctcaggatgaaactgtgggagatccttggtggtacttcacaaaacaaggaggctgttgcctcaccaaatcctgaagatattgagacgccatgccaacctaaaagtcaaattgccaatggaccatcttcaggaagacagaaggttttcacttcacctgttccatataatattaagacaccagctcagtttaatagtcaaacagcgaacaaaccatcctctgatccaattgagtcagactccgacagtcctcaagtagttgaagtaagacctattactcgttcgctggggcgcaagaaagaaccaacaggctccacacatcaggataagagcgggagtgcaaagaaaccattgtctactcatcgttctacacccaagcagaaaatattggacaatgtgtttgccttcaacgataaatgcacacctaaaacagtaggaaaatctgcaaatggtgaatctggcagcttgaggaatcttagaagcttgagtaggagggctaaagttgagccaaagaaggcacattgttcggacaggatttctcataagactacacaggatgatatggaaagaaaggtaccttctaaatatataccatcagagaaaaaaggtgagaaaacaaactccttttcttctttatcccgaacaggaaaaactgctgagagttgttctagaagccctaaaagggagagaagggtgaacacgatggctaatgttggggctcgaaagatgcagttatctgaaaatttactggtcaagactctaaatgatggtgaacacaagctctcttctcctcagcttacttcctttaagagcaagggaaaatgttcttctatatcgcctcaacagaaggagaatgataatacccacatccctgaagcttcagacagaacagcagcaagaaatagttttaactccacaccttctcctgctgctaatccatctcctgtactgaggaagtactcatgggaacatgatgagaatcctgcgataaatggtaaatctggacagaaggatgccagtccgttggcagacagattcagcgacatgccagatgattttgcaagtcctacttttgcagcaaacataaaaatatccccccacagaagtaaaatgctagacgatgacctatttagctccaaatatccaaaaggtgtgaacaggtcaagatcaacttcctttacctcggatccagaatcggagccattggtatgcttcaatctctaaagcagattgcaactttagtaaatggttctgtttatactctacgtagcagagcaattttatccgtttgacactaattgttctactgtccaggacaaaatggagaaaaccaacgagttacctggcagtgaatctcctaactctcaggaggaaagacagaacagaaaacaaccacatctttcacccctttctcctattgagagtgaaggggctcaaatttctattccaagctttagaaaaggtcagaacgccatcaatgccaattttctaggctctttattaaaaaggggtagacatgctcctgtcatgtttaatgcttccattctagactcaaaggtagccatgctaacttacagtgcactacccccttattctgcatgtggaccatacttattggacagaaatcttatgtatatgtaattatgtatttcaagcacctcttgaatttatcatttaggtcataggatcaacactggccataatccttataacatttgcataatctgtcagatcaatcctgttagtattggtgttcatgatatgtacacttattttattggtgcaaattttgacatcgttacttttggcctcataaacgctcgaagtttgactatttgaacattgaattctaactatactggcaagcatatttgcagggttgttagtggtgagattgcaaaaaagaaaaaaaatttctgtgtcacccacttcatttacttgacctttttatgacaattacacattttatgtgacatgataaatgagtatttgtgtttgcttttgctgtcattttcgattagtgctgccttactaagccgttagatgtcttccaggtaacctgctattgtaacttgtgttcactggcctgaccgcagaaaatttcctaaattcctttttgtggctgtatagttaggctcttcagattttcagctatgtcttgctgctaggtcacaacatttttttgcaactgaaggatcttgaaacttgaaagtgccaattcatgagagcatgccgtttgtgtgatagctgacaagtggcatagcagcaacaagtggcatattctgccatgtgcaagcatatccttagtttacatatatttcatcagaactgtttaccatgttaaattcgctattagtttagttattcgactgtattattttcagcctttcagaacattaattacttgagctaaagttctcattggagatgcacacatctatctatcttaaagttgcttattcatgccttgtcgctttgtttttcacatgcaggatataaatctcataaatggctttcagatgttgacagccctgataaatcttctattgagcatctgggccgaaaatcacatctaaaagagggtagaaagggcaaaaggcaattaacttcgccaacccattttgccacctctggtaacactgattactttactgttgtgcttgtgcattcatggttttcggtctgaccaatattttttttctcagggacgcaagaaacaatgtcagacaaagaaccagaaaaagtcccagaaaactacctaaccaggtttgacttaggtcattgtggcttaaatagtaggtacaaacatgattgctagtttgctacttggattaatttcatttcttgacttccaccagggcttttgatcagttagtagtggtgctaggaaggttccaaaccaaaatcaagtctgaaacaaggaataaaagttctaagatacttgcagctactggagagataatacgccagcaccttgaaggggttgaggggcagatgcaggctgatgtgtaagatcgagtgccagtgccacttagaaactgcctcttttcttctttatgcacatgcgattgtatataggccagatatgtactgcctctttcatgcatggcatttaactgtgatttcagggacaagctggtcaatgcaggaaaatctaaaaggaaacgtctagagtcaacatttgaaggtaaaactctaatcatgtcgatgcaaccattcataatgcaattaatctatgagggcatgatgtggcaatattttttatccaactattgtttgttgtaactgtaacattttttattctacgtatttggattattcatctcatgtaacacaaactcttaaatcttgattcatcaatacagagtcatgtttgaactctagatagaatgtttgaagtctactacaggataacaatgtaatctgcctgttcccttggtttggttggctagaatgacaagtaatttgaaatggagggaacattagtttgagaaaatctcatgcagtatttgtcttattctgcctgcaatcatctgatgtggcttggacgcttggtctttatctacttcgttattttgatctcgtattatatactgagttaaatctcaatatgcaactgtatataatgttacaacttctttttccttcatgccttgtttttcttggatgattttaactattcaactgatgtcttctggtttgcagagcaacaagaaaagttaaggattcttcacgagaagttcaaggaggaggtcaaccagcagttgctcggttgcaagaactctgttgaggattttgaggcttaccatgcagaacttaagggagttgctgacaagcaaagtaagttaaacttaatacatacactatctttatgaatgggactgaagcaattaaagatttcttaccaatgtacacctgaaaatcccataaaaataatgtacacctgaaaaaagtctctaaggttgcaaagccatgttaacattctatatactgagcctgatgaactattccctccatctcacaacctaggaggcaccaagtaagaaccaataaatgttgagatgaccataaatatgcctactaaatgacatgctagacacactctacctgttttacagctttaaattagggtataatagaaaagggtggaatatttacattaattatgaaaagaatgtatcccgaaaaggacgggcagtttttgtgaaatgtaggaagtatggttataagcatttccattggaattctctacttacaaattggtaacactacatgttatccagtcatttgtacttcaactctttcttagtatagttaaaatcacacgtttagttttcgtgaaaaaacctaacgaatttagttgaaaagaatgacagcccaatcttcgtatgaagtgagttttctgagaggttcgccggttcccctgcaatggcatacttgtccagtgacataactccagctttgatcctctcttagcactattaggatgcaagttatggtgtggttaacaggacaaccacttcaaggattctatttatactaccgttcactgacccatggtgtgtgctaatatttgcatcaacagaagcctcacacaagaagctccttcaaaatgctgagaagacagtcggcgctcagctgagcgacgcggaaaccaaaatcgctgaggtccagaaggtgagccaatgcaacttttaaaccatcctgataagtgataaccatatatctaccaaatgctcaatctgtttttgacacgttgcttttcagagggcacggaagaggatgaagggcctcaaatttgtgctcaaggagctcattgcagaaactgcagagtaacccaaccaaagttggttcactctgcacaagtacatagcaaaggtgtattgaccaggacgtacagtttcacttacaaataggctactgtttcatttacaaagggttaaaggagaatttacaaaagggtacaggagaatagtgtcagaatgcatataggtttcttaccagatgaacttttcacagcatacattcaaggattctattctttccattagcatacattcttcgcctagctatcagatagacatgcattgttaccggcgtgccagtttgaataatttacattcctgagaaccgacacattttctgtgtactgtaatcgtattttatgaaaattgaaaattcataagttggaacatctactgcaaagttgcgatgcaaatgctcattgtacttggtttggtggcaatgttctctccattatttcagctgtgaagaatgtgtaatgtgtacatatgtttctgcagttgtaacgggagctaa</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0405500, RefSeq:Os10g0405500