Os02g0276900

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Revision as of 02:24, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0276900| Description = Helix-loop-helix DNA-binding domain containing protein| Version = NM_001053081.1 GI:115445532 GeneID:4329008| Length...")
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Gene Name

Os02g0276900

Description

Helix-loop-helix DNA-binding domain containing protein

Version

NM_001053081.1 GI:115445532 GeneID:4329008

Length

7415 bp

Definition

Oryza sativa Japonica Group Os02g0276900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:10210516..10217930

Sequence Coding Region

10211011..10211163,10211327..10211371,10211672..10211716,10214082..10214189,10215426..10215491
,10216359..10216424,10216661..10216738,10217047..10217401,10217581..10217903

Expression

GEO Profiles:Os02g0276900

Genome Context

<gbrowseImage1> name=NC_008395:10210516..10217930 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:10210516..10217930 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggataggggagtcctccacaaatcatcagctctagtgggggagatgggggaaggccatggatggtggagtgtgaataatttgaggcccccctttgttgagcagcttcacaatccggcttctcttttcttgccatcctccaccaccacctccactactccctcctcctcctcctctcccctccattccttctcctccctgctgctctcgaatcactatcctcttccttctactgcgacgacaagcaccgccgccgcgccttggcacgacaccggcagccgccacggccaacatctccaggactcatggaaccatatcttacttggtggattggctagtggtgaagaggggtacaacaagaactgggaaggccaggtgctgttcccaactacaccagctgcagctgctgcagaagctgatcatgggagcaacagctacaacaacatctacagcaccaccacgactagccatgggagcagcacgagtgatgatgcttcccaattggcagtggctgcaaggccgtcgtcttctccatggggtggcatccatggccatcacccccaccacaacgccttgcagcagcaagcttcctcccctaggtcttcttgcatcacctctaccacctcccttggaagcaacggcgtgctggagttctcaaacaacacttcaccacgtgagtgcatcagcacagcatctggagcagctttcaagaaggccaggacccaagaaccctctccggctcaagctacagttaaggtgaggaaggagaagctaggtgatagaataactgcccttcaccagcttgtctccccatttgggaagactgacactgcgtctgtactccttgaagccattgggtacatcagattcctacacggtcaaattgaggctctgagctcgccgtaccttggcaatggcggcagcagcagcaatggtggaggtggtggtggaggtggctccaacagcaagctccagcatcagccagaagccagcagggtgcaaggagaaaggaacagcatatttccagaagaccctggccagctcctacatgacaatgccgtgaaaaagagaggacagcctgatcaagatgaaagctgtgaggaagcgaagacgatggatctgaggagcaggggcctgtgcctggttccggtgagctgcacggtggacgtcggcgtcgacgccggcccggcggactactgggcggcgccgccggctttcggcatagggttcggccgctag</cdnaseq>

Protein Sequence

<aaseq>MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPASLFL PSSTTTSTTPSSSSSPLHSFSSLLLSNHYPLPSTATTSTAAAPWHDTGSRHGQHLQDS WNHILLGGLASGEEGYNKNWEGQVLFPTTPAAAAAEADHGSNSYNNIYSTTTTSHGSS TSDDASQLAVAARPSSSPWGGIHGHHPHHNALQQQASSPRSSCITSTTSLGSNGVLEF SNNTSPRECISTASGAAFKKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTD TASVLLEAIGYIRFLHGQIEALSSPYLGNGGSSSNGGGGGGGGSNSKLQHQPEASRVQ GERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGV DAGPADYWAAPPAFGIGFGR</aaseq>

Gene Sequence

<dnaseqindica>6768..6920#6560..6604#6215..6259#3742..3849#2440..2505#1507..1572#1193..1270#530..884#28..350#atatcagcatatcaagggagagggaatatggataggggagtcctccacaaatcatcagctctagtgggggagatgggggaaggccatggatggtggagtgtgaataatttgaggcccccctttgttgagcagcttcacaatccggcttctcttttcttgccatcctccaccaccacctccactactccctcctcctcctcctctcccctccattccttctcctccctgctgctctcgaatcactatcctcttccttctactgcgacgacaagcaccgccgccgcgccttggcacgacaccggcagccgccacggccaacatctccaggactcatggaaccatatcttactgtaattcacacacacacattctctctttttttatttatatgtttgtaattgattaacttgatattattcttggaaatggtctgtttctagaattcttctgaacagctacatgaaataatattgtgctaaaaacctcatctctccctctttacatggtcatatatattgtgatcatccagtggtggattggctagtggtgaagaggggtacaacaagaactgggaaggccaggtgctgttcccaactacaccagctgcagctgctgcagaagctgatcatgggagcaacagctacaacaacatctacagcaccaccacgactagccatgggagcagcacgagtgatgatgcttcccaattggcagtggctgcaaggccgtcgtcttctccatggggtggcatccatggccatcacccccaccacaacgccttgcagcagcaagcttcctcccctaggtcttcttgcatcacctctaccacctcccttggaagcaacggcgtgctggagttctcaaacaacacttcaccacgtgaggtagggacaatcatcattcaagataatcagtctggtaatttttgtttgtgtgtagattattttaggtgcttatcatttactgaggagtgagggtgggtgaaaaagtctttctttgaggaagctcatcatcaccttttggatggttagaaagagagattcaatactaatagctttgtgtgggtagataaccatgcatgaaagtttcactcctcctggaagcagttaagatagggagccatgttgataattaattagttatgtatgaaagttttgtaactttgctctccatccttttgtgtttctcctagtgcatcagcacagcatctggagcagctttcaagaaggccaggacccaagaaccctctccggctcaagctacagttaaggtactctctctctctctctctctctctctctctctctctctctctctctctctagatctctcaatgagcatggcccaatcaatcagagcaatctaagctagcactgaagcaatagtttgcttgctgaaacggacaggcatggaatcattgtaggttaagagataaggtgagatggggttggagatggaaatgatggcgttcttaattagtatgttttgcttgtgctttttcttcaggtgaggaaggagaagctaggtgatagaataactgcccttcaccagcttgtctccccatttgggaaggtacatatatatcactacatgcatgttattagtctttagcttttagatttcaacaatgggaagagaataattgtcactaggctagtagaatataacaactgagttcgttgatctggtaaagtttcttaattatacaaatgctaagtgttcaacgaacagatggttatttctgtaaggaatatatacaagaaaaaccagttggaaagacaatggataagacaatattataaggtgctatgaccacatatatacaatgtcaagtagttcctcatttagcctcttctgagatgagctgtaattttccggagaatgattagaccttgtacctaatggatatgaaaacggaaagagtacgtatgtgcccatgagtatggcacaccggcttaattattactatagtccaatacatcaatgtatatataaatttagattaatgtaaattattcttatttctaagtagtaagatctgttcctacatatataattaagtctcatttattttgttcataaaattacaaatatatatttcagtgaaacaaaaggaaaagacaaaatagaagttaatgaaatttgagggaaaactctactgagaattatctgatgcgttgatgatcatatatactcctaattagttatctttagctactttaccgaagaaggaagttatatatatcaatatatataggggaatgaatgaaactctctatagaataggagtatcttgtggtgatagtagtacttttgtatctttgtttttaacccctgatgggtgatgaccagtcatgtagtagtaaaagaagatccaatattccagagaaaaatacaaaaaagagatcctgacatgggctaacctctcttttatgccagactgacactgcgtctgtactccttgaagccattgggtacatcagattcctacacggtcaaattgaggtccagctctttctctccctctcatttctctccatcatctctctctctcctccatgcatgcgtgcccatacctgcagagcagctagctctatcaaataatgctactccctctctttcacaatgtaagtcattctaccatttcccacatttatactgatgttaatgaatctagacatatatatctatttagattcattaacattattatgaatgtagaaaatgctagaataacttacattgtgaaacggaggaagcagaatccatgaatcataaagtgtttgtttcttggttattgtcattcgtacatgcggcaggtcgttgttcacttttgacacaacatatatacatactttctggagacagctccattaattgcaagtatacatactttgacataataacatcttaattgaaacatttcatagctagggttacaagcatgcagagattagcttagcttagcttagctccatgaaatgatgcatagtagattgatagagtaaataatattatacagtgatttgatgtgccaaagaaggagctagacaggttgaaacaaaaagaggcagggctctactatgcaccaatgcatgctctctcttgcatattacagatactaaagctgcatatgtagtatatgtgcctgcgttgccatagctagacctatataatcccggtcgatccgtgcatgtgtgtttatgtttatactggcttgtcgatctgatcgatgcagcagcatatgcatgcatgcagatggtcagagagagagagagagagagagagagagagagagagagagagagagagccaggatgcaatctttttagcctgcctgctgctcatctcatgtaaacagtgcttgctctcgcttgctttgccttttcgcaaaagcagccacacgttgtcctcccctgtgctgccacaagccatcacacaccttttcttttcttttttttcttttttttgcccctcttaattagcttcagtacgatactccctccgtcttaaaaaaaaatcaacctagtactaaaatctttatgtctagattcgttgtattagtagaatgcgtcacatcgtaatacgaggtcaagttttttttagaacggaggaggggagtaccacctaatactactaccatataactacacacttacattaaacctaattaacgaaatttctcactctagttaatatatataatctccgacgacccatctcatggtcatggatctccaggctctgagctcgccgtaccttggcaatggcggcagcagcagcaatggtggaggtggtggtggaggtggctccaacagcaagctccagcatcagccagaagccagcagggtgagtatatagctatacaatatctactgtagcttatatccactgtgcatgcatgcctgcactgcaaacgcccccccacgcgcgagagatcgatgtgcacaattcccgacgttggctgcagcagcaggggttttttttttctctcatcatcaccgtgcgtgccatatccatctgcacgccttccatccgcggttcgcatcgcatcacatcgcatcgcatctgtatccttttgcgtttggaatggctttgaattggcagctagctgggtcaacaagggtgaaagggagcgtaagtattggcagaaaatatccaggcttaatttgcattgggtcgtcgttgcatctgctgctgctgctgcaaatctgcaatagcagcagcctggtcttttttaccgtgggcaaggcatgcagatgcagatgcaggcagcttcattattgggtggcggctgatagataggagtaagtagatcatcggaatgaatggtcgttggtcgttgttgttactttgttggcgtggtccaaacgtaaccacggtccatatatataggaaaaccgttttcgtccttacttagttgttgtagcattattttctggctcatatatatatcgatatatatggttgttggtacgttggggggtcgtcgatcgaactcagatcgatcacgcttcaaattaagcccaaacacattattttaccatatggtgcaatctatcgtttgtttcttgttgtttttaaatcatatcatttcaatggtttttaaataattatcgtgtgaaaaatagacacattcaaattaagccggcacacatacaatgcatggggagtagggaatgcataatgatgggggggggggggggtaaaacacataaaatgtcattggagactactatagtagaatattgagttgcatgcacccttacgcgaggcctcctcaagccctttagcatgaaatagagcgctaaccaagatttgatctcgagatctttggatctgattgcatattaagttgtgcaccaatcaattcaaactaaaagccacaactgattagaaaaagcagacaattcactttatattcgaaaaaaaaacacactctctatatatattggttattaacactagccactttgtagaggattaacaaaaacatttagtcctctagctatgtacaacagtaggtgacataaggctttgtcatgacagaaacacaacaatgatttggtcggttgaaaccgatgaaaaattgttggtttcctgcaaccacctcacgattaataaagtatctctaccttttttatgtgcacaaaatataattctatcagtactactgcaatttattctagttaactttatttaggaagcatgacccgtagtacacacaaataatattgaaatcccctcacagagcttgtccacaataaagacaaagggtaatgtcaagtgattgtgttccaagtacgttgtcaattactatctagcatgcatctatctgttcatatgtcaactatagtacagtggtgcgcacatatttgttgtatgtttttggcagctaggctaagttgttgggaaaaatatatactgatagaaaaaacatattcgtacatatagtaggttgttttgtaattaaataaccacacaccacgcataaaaccttttttttttccaacaagaattctcttttaggaaaaggctacattagacggtcatacacaaattttagaccaaacttcaacctcacaaattttagctagtataagtttataaaatgtgcccacaacttcaacctcacaactattttcatgtagcacatacacttgaaatattttatctaaaattatggctttattccaaactatgttgcctgcacaggtgttgcgtcagtacattttgttaattgtagggttacgttacttcttcatgtactgctcaatataatattattctgatccacattgacacatgcattgagtctgcacactgcagaacagggagtacacttgctataattaattaatctaatcattgcaattttattgtactggtctcaatagactattcttccgatccatggattgacacatgcactgatctctgcacactgcaaaaagaacaacaaaactaccatatgcatgggttagctagattagtttagattaggttacgtaatggcagaacaaactttgcacacaataatcaagaataaaaagcttgtgcttatgattttattcagagcatcgtatctctgtgagatctttcgataaaagtattgacagaaactttatgcctgacgaaccaaatgagtatatatatgctggtcgataaaaaagctagctgtttgattccctttaattgctgtttaattttataggtgcaaggagaaaggaacagcatatttccagaagaccctggccaggtattaagtaactaatgaattattcgatcaattagtcatttttcctttatgggatctatacccagctgatcagttaagtaaagcacaaaagatgatccttttgttcccaaaggggcttttagtttgtctaaagctttgctttaattggtccataaaagcatcctggaaagttaatcatggggccagtactttgtctctagctttacacctttaataactatcactgcaaacttagctttgattaatcacttaataactaatacaacaccctctttatgtgtggttccattgtacgagcagctcctacatgacaatgccgtgaaaaagagaggacagcctgatcaagtgagtcctcatcccttagaacgatacatgtactctcatcgatttaaatttcatgtaaattacaagtatacataatttagcaaaataattgtaaaatactaaatggtgcctacgataattttgtgtgacaataattaactcgattaattaattaattaatcaggatgaaagctgtgaggaagcgaagacgatggatctgaggagcaggggcctgtgcctggttccggtgagctgcacggtggacgtcggcgtcgacgccggcccggcggactactgggcggcgccgccggctttcggcatagggttcggccgctagatcgatgcatggtccggtgatctctgtgggcgccatggccaatgaaatggctggctcggctggctaattaagctagctgaagaatcaatggaaatatagagatcatatcttacatattacatcacatgcatgcatgcttgcatttgggttaattagctgcataacatcaggagcagccatcctgctgaaaaggctggttcctcttgatgctatgcacgtgtatgctcatggtttgatgggtgcaacaacagagtatataactggtagtgtgtgtgtgtgtgtgtgtggctcttgtctagctagagattgatctctttgggtggattaatggattattatgcactggaagaatgaagaagggttaagttgtagacagctgccagagcgcacctatgcttgctatagcttggtgttgatcatcaaacatcagtaacacccttgtaatttaagtcttttatcttggtgaatgcatgcatgtcaccttgcttgttcacg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0276900, RefSeq:Os02g0276900