Os02g0285700

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Revision as of 02:25, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0285700| Description = Plant MuDR transposase domain containing protein| Version = NM_001185971.1 GI:297721074 GeneID:9268961| Length = 644...")
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Gene Name

Os02g0285700

Description

Plant MuDR transposase domain containing protein

Version

NM_001185971.1 GI:297721074 GeneID:9268961

Length

6449 bp

Definition

Oryza sativa Japonica Group Os02g0285700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:10757808..10764256

Sequence Coding Region

10757808..10757952,10758267..10758340,10758560..10758718,10759506..10759674,10760116..10760255
,10760369..10760779,10760955..10761234,10761408..10761471,10761895..10763181
,10763263..10763722,10763888..10764256

Expression

GEO Profiles:Os02g0285700

Genome Context

<gbrowseImage1> name=NC_008395:10757808..10764256 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:10757808..10764256 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttttgaatggtcatggcccctcgttatatttgtgtcggtacaagagaaagatacaaatgtttcaatgcaaaccgaagatgtggagggttctagcaatgcaggggatgttgttggaccatcgatgcaaaatgaggaaaatcaaacaagggaggagcaggccatgggcatggcggatgagggggagatagtcggtataattgttgatgaaatggagagggaagattcagataatgagcaagcggaggacgacgcatcatccgatgaggaaggtgatgtaatggccactgattgggcaaatgaggacttctttggacttgttatatcagatggtgatcatgtaccctgggagtataaggagaacgagggtaaatggaatgattattggaaagttagcattgtgaccaagcaccagtgctacttacaaggggtggagaagtatcaccgaaacatcacttcagcttttgtggcaagtgagatgtacagtagtgttgttggtaacattggctttgaaccaaaatcaattattagccacatcgagaacaaattcaagtacaccataagctatgcaaaagcctggagagccaaacaaaagattattgagatgaggtatggcacatttgaagcttcttatgataatttgcctagtctgttagccaccattgcccagaggaataatagtacttactatgacctacatacatttacatcggctgatgatcgaacaaagagtgtgctgcaaagagcctttttctcattgggtgcctgcatcaatgcttttgtgcattgtcgatctgtcctatgcatagatgggacatttttgacagagagtgagaacactgaaagctggtactggttcctagagagagtgcacattgcagtggcgcgtatgaggcccaacgtttgccttatacatgatcgtcatgcgggtatgttgcgggctattgactacttgcagaacggttgggatgagaagggacttccagctaagtggcctgatgttcggagtcggtggtgcatgcgtcacatgggtgcaaatttctataagcaattcaagaacaagcatcttatggagctctttaagaggctctgtgcacagaaccaagagaagaaatttaatgagttgtgggacaagttggatgagttaacaacgaagcaaacagatgagcaatctcgcagaccacaagttgaaggtgacgagcctcccatacctcttggtgcattacatgatgacccaccaacaatgagaaggaggtcggggtcgtccatcagaaatttcactcagtggattgagaatgagcctaaggagaagtggtctctattgttcgacactgatggatctcggtatggcataatgacaaccaatttggcgggggtgtacaactgggtaatgcgaggagttcgggtacttccattggttgctattgttgaattcatccttcacggcacgcaagcctactttagggatcgacacaagaaaattggtccgtccatggccgataacaacatagtgtttggcaacgtagtgacaaagtacatggaagataaaatcaaaaaggcacggagacatagagttgttgctcaaggcacacaagtgcataagtatgaaataatgtgtgttgataggagcaggcgtggtatctatcgcaagcaagccgtgcaggaatgtgtcttgaaggcggatggtggatgtacctgcagttgtatgaagccgaagcttcgtcaccttccttgctcacacgttcttgctgctgccggtgattgtggcatatctcccaatgtgtacgtctcaaattatttcaggaaagaagcaatctttcatacatggagtgaggagatatatgggttcgggatctcaggatcttacacaacgctaagtgccaaagttttttatattccagatccatctaagttaagggtgaaaaagggtcgacgccaaactagacgcatcagaaatgatatggatgagtcagaagcaggtgggaggactttatgctgcagcaagtgtgatctgcgcggccatacttacaagaaatgcccgaagaatgcagaagttccaagtggcgcggatgctggtccatctggacaggcaagtgatggaaggcaaccacctggtatgttgtacgacacaccggcgctgttcaaccgtgggattgacaggaaccaccgctcgttcctgttgcgtgcggcaggccttctaccactttgtaggcttgttgaggcggcggcggacgaccgtgacccatcgaagcagtgggatgcagaccggtcactccttgccgctctggtagaccgctggagacctgagatgcacacgttccaccttccctgtggagagatggctccgacactgcaggacgtgtcgtacctgctcgggctaccactggcaagagccccagttggtcccatggacggtgtttttggctggaaggaggatatcaccgcgtgcttcgagcacgcggaccatctccaccctgacgctgatgattactcggtccgacgctcccttgagacgtacctgctgtggttgttcgggtgggtgatgttcactagcacccacgggcacgctatggactgctggctggtccactacgcacggtccatcgcggatgctcagccacaggacgtgccgcagtggagctggggttctgccgtgctaacagccacgtaccgtgccctctgtgaggcatgcacgaagaccgacgcgggagcgatcttcgctggttgtcctatgttgcttcagctttgggtagccaagaggtttgccataggtcgaccagtggtggacagcgcaccctacggggttggtcgcagcgcgaagtggctagaggacggtcccacaatggggacttactggtgtcgacgtggggtgagacgagattacccggacttcgtgtttgagtttacgcagcgccgtggacgtcgtacctccagctggtctggtacaaccacggcctcgcgcgcctaccgtcggagtaggacctcgacctacggcaccggtttcgcacggatttccagctgggatcttcggtacaggtgcctcttcctctcacgccggtggtctggtcctactagccagttctacgacgatgacttgcacgatgcgcacgaccacgacatactaggctcctctcagcttggaggagctccagaggcgcacactcaggagcagccaaagacatatcgtccaatgtgcaacttcatcgagtgggtagacatggagaacccacaaaacgacggaacacgtgcatacccatgtagtgaaacaagatcggactacctaaggcggaaggatgagcatgaacgccgaattgctgctgaggctttagaatggcaggaggatgtaaggaaatgtcaattcgtacaatggattgacacagtcagagttacttccagtggcgggccgataacgatgtgtggatttactcggtggatcgacaatgtcactccatcatatcatggccaaaagatagcagagtcagaaacacaagtagagtatcaacgattgaaggaccacgagaatgcaatgcatattgaccaacctagaaggggctga</cdnaseq>

Protein Sequence

<aaseq>MAFEWSWPLVIFVSVQEKDTNVSMQTEDVEGSSNAGDVVGPSMQ NEENQTREEQAMGMADEGEIVGIIVDEMEREDSDNEQAEDDASSDEEGDVMATDWANE DFFGLVISDGDHVPWEYKENEGKWNDYWKVSIVTKHQCYLQGVEKYHRNITSAFVASE MYSSVVGNIGFEPKSIISHIENKFKYTISYAKAWRAKQKIIEMRYGTFEASYDNLPSL LATIAQRNNSTYYDLHTFTSADDRTKSVLQRAFFSLGACINAFVHCRSVLCIDGTFLT ESENTESWYWFLERVHIAVARMRPNVCLIHDRHAGMLRAIDYLQNGWDEKGLPAKWPD VRSRWCMRHMGANFYKQFKNKHLMELFKRLCAQNQEKKFNELWDKLDELTTKQTDEQS RRPQVEGDEPPIPLGALHDDPPTMRRRSGSSIRNFTQWIENEPKEKWSLLFDTDGSRY GIMTTNLAGVYNWVMRGVRVLPLVAIVEFILHGTQAYFRDRHKKIGPSMADNNIVFGN VVTKYMEDKIKKARRHRVVAQGTQVHKYEIMCVDRSRRGIYRKQAVQECVLKADGGCT CSCMKPKLRHLPCSHVLAAAGDCGISPNVYVSNYFRKEAIFHTWSEEIYGFGISGSYT TLSAKVFYIPDPSKLRVKKGRRQTRRIRNDMDESEAGGRTLCCSKCDLRGHTYKKCPK NAEVPSGADAGPSGQASDGRQPPGMLYDTPALFNRGIDRNHRSFLLRAAGLLPLCRLV EAAADDRDPSKQWDADRSLLAALVDRWRPEMHTFHLPCGEMAPTLQDVSYLLGLPLAR APVGPMDGVFGWKEDITACFEHADHLHPDADDYSVRRSLETYLLWLFGWVMFTSTHGH AMDCWLVHYARSIADAQPQDVPQWSWGSAVLTATYRALCEACTKTDAGAIFAGCPMLL QLWVAKRFAIGRPVVDSAPYGVGRSAKWLEDGPTMGTYWCRRGVRRDYPDFVFEFTQR RGRRTSSWSGTTTASRAYRRSRTSTYGTGFARISSWDLRYRCLFLSRRWSGPTSQFYD DDLHDAHDHDILGSSQLGGAPEAHTQEQPKTYRPMCNFIEWVDMENPQNDGTRAYPCS ETRSDYLRRKDEHERRIAAEALEWQEDVRKCQFVQWIDTVRVTSSGGPITMCGFTRWI DNVTPSYHGQKIAESETQVEYQRLKDHENAMHIDQPRRG</aaseq>

Gene Sequence

<dnaseqindica>6305..6449#5917..5990#5539..5697#4583..4751#4002..4141#3478..3888#3023..3302#2786..2849#1076..2362#535..994#1..369#atggcttttgaatggtcatggcccctcgttatatttgtgtcggtacaagagaaagatacaaatgtttcaatgcaaaccgaagatgtggagggttctagcaatgcaggggatgttgttggaccatcgatgcaaaatgaggaaaatcaaacaagggaggagcaggccatgggcatggcggatgagggggagatagtcggtataattgttgatgaaatggagagggaagattcagataatgagcaagcggaggacgacgcatcatccgatgaggaaggtgatgtaatggccactgattgggcaaatgaggacttctttggacttgttatatcagatggtgatcatgtaccctgggagtataaggagaacgaggtaattgagggtgctaggtatgctcataaggatgagatgaaggaggcagtgaagcattgggcagtttccttgtagagagagtttagggtggtcaagtcaacaaattatgtgtatgaagtgaggtgcatgaaggaagattgtccgtggcgtgtccatgcatataagggtaaatggaatgattattggaaagttagcattgtgaccaagcaccagtgctacttacaaggggtggagaagtatcaccgaaacatcacttcagcttttgtggcaagtgagatgtacagtagtgttgttggtaacattggctttgaaccaaaatcaattattagccacatcgagaacaaattcaagtacaccataagctatgcaaaagcctggagagccaaacaaaagattattgagatgaggtatggcacatttgaagcttcttatgataatttgcctagtctgttagccaccattgcccagaggaataatagtacttactatgacctacatacatttacatcggctgatgatcgaacaaagagtgtgctgcaaagagcctttttctcattgggtgcctgcatcaatgcttttgtgcattgtcgatctgtcctatgcatagatgggacatttttgacaggtaaataccgaggttagatattgacagcaattgggtgtgatgggaacaaccaggttctacctatggcttttgcatttgtagagagtgagaacactgaaagctggtactggttcctagagagagtgcacattgcagtggcgcgtatgaggcccaacgtttgccttatacatgatcgtcatgcgggtatgttgcgggctattgactacttgcagaacggttgggatgagaagggacttccagctaagtggcctgatgttcggagtcggtggtgcatgcgtcacatgggtgcaaatttctataagcaattcaagaacaagcatcttatggagctctttaagaggctctgtgcacagaaccaagagaagaaatttaatgagttgtgggacaagttggatgagttaacaacgaagcaaacagatgagcaatctcgcagaccacaagttgaaggtgacgagcctcccatacctcttggtgcattacatgatgacccaccaacaatgagaaggaggtcggggtcgtccatcagaaatttcactcagtggattgagaatgagcctaaggagaagtggtctctattgttcgacactgatggatctcggtatggcataatgacaaccaatttggcgggggtgtacaactgggtaatgcgaggagttcgggtacttccattggttgctattgttgaattcatccttcacggcacgcaagcctactttagggatcgacacaagaaaattggtccgtccatggccgataacaacatagtgtttggcaacgtagtgacaaagtacatggaagataaaatcaaaaaggcacggagacatagagttgttgctcaaggcacacaagtgcataagtatgaaataatgtgtgttgataggagcaggcgtggtatctatcgcaagcaagccgtgcaggaatgtgtcttgaaggcggatggtggatgtacctgcagttgtatgaagccgaagcttcgtcaccttccttgctcacacgttcttgctgctgccggtgattgtggcatatctcccaatgtgtacgtctcaaattatttcaggaaagaagcaatctttcatacatggagtgaggagatatatgggttcgggatctcaggatcttacacaacgctaagtgccaaagttttttatattccagatccatctaagttaagggtgaaaaagggtcgacgccaaactagacgcatcagaaatgatatggatgagtcagaagcaggtgggaggactttatgctgcagcaagtgtgatctgcgcggccatacttacaagaaatgcccgaagaatgcagaagttccaagtggcgcggatgctggtccatctggacaggcaagtgatggaaggcaaccacctggtgaaggaacaacaagcaggcgcgcaaggccaaggcgtcgtcgtgcagcaggcaattccatggtgtaacattgctatcgaattaggaaataaaatgatattgtgttgtgatgagtgttcggactaagtacttctatcgtgtaatttcaatgaatgttgttgtaatgagtacttccgactattgttgtactagtagtattgtgaactcttcggtgttgtatcataatgttatcgtgatgagtgttcggactaagtactcatatcgtgtaactgcagttattgttgtaatcagaaatattctgtattgtgacccttttgtttgtttttactcttgtttaatatgtgttagtaattcacttatgaacatttgttagttatgttgaactaattatttttatgtttctgatcaatctattggatacaggtatgttgtacgacacaccggcgctgttcaaccgtgggattgacaggaaccaccgctcgttcctgtcagtagtctagggtgcacagctcggcactttccgtccacgcacgtcacgcgagtggttgcgtgtcgacccccgtcacgttccttagtacgcgtatgttcaattttacgtaagcacatttcaactcaactgtgctttgtcttgtacttatgtttaaagtttgctctatgcaggttgcgtgcggcaggccttctaccactttgtaggcttgttgaggcggcggcggacgaccgtgacccatcgaagcagtgggatgcagaccggtcactccttgccgctctggtagaccgctggagacctgagatgcacacgttccaccttccctgtggagagatggctccgacactgcaggacgtgtcgtacctgctcgggctaccactggcaagagccccagttggtcccatggacggtgtttttggctggaaggaggatatcaccgcgtgcttcgagcacgtgatgcgccttccacacctaggaccgcccaacacccttcccccgtactctaccatcgggcctagcaaggcttggttgcttcagttcactataagtaaataacttgttattatcatacatgcttagtttgtgatcaacaaattgttttgtagtaacatttcattattaattgtaggcggaccatctccaccctgacgctgatgattactcggtccgacgctcccttgagacgtacctgctgtggttgttcgggtgggtgatgttcactagcacccacgggcacgctatggactgctggctggtccactacgcacggtccatcgcggatgctcagccacaggacgtgccgcagtggagctggggttctgccgtgctaacagccacgtaccgtgccctctgtgaggcatgcacgaagaccgacgcgggagcgatcttcgctggttgtcctatgttgcttcagctttgggtagccaagaggtttgccataggtcgaccagtggtggacagcgcaccctacggggttggtcgcagcgcgaagtggctagaggacggtcccacaatggggacttactggtgtcgacgtggggttagtggaactttgctgcgttataagtttatcagtcgtcttctttttttatcatcacataacatgtctaattccgatcatgtttattccaacgtcgttacgctcacgtccaggtgagacgagattacccggacttcgtgtttgagtttacgcagcgccgtggacgtcgtacctccagctggtctggtacaaccacggcctcgcgcgcctaccgtcggagtaggacctcgacctacggcaccggtttcgcacggtactgctcagaccagaggtttcttaagttttgtttctgtttttgtacgaaaacctcaccccgtcgtaacttgacgttccatcctcgcaggacctcgtttgccttcgagcgcccctagcatcggagcagtgcgacctacagcaccggtttcgcatggtactgctcagcttagaggttagttcatttttgtttcagtttttgcacgaaaacgtcaccacgttttaactgcacgttccatcatcgcaggacctcgtctgccttcgagcgcgtttgcaagcacgaccgacgctttcgcgagctcttcaggggcgttcgccagcacttccggcgcgttcgccacctcttcctctcacggagcgtcgatccctcgcccacacggtactttaatttttgttactactattaaatacctgtatgaaactgatggtccttgtccagcaggatttccagctgggatcttcggtacaggtgcctcttcctctcacgccggtggtctggtcctactagccagttctacgacgatgacttgcacgatgcgcacgaccacgacatactaggctcctctcagcttggaggagctccagaggcgcacactcaggagcagccaaaggtcacacctatacaggcaggacgggttggccgtgccataccaccggaccgactcacgtactcctaggggcacgttagggcacagggtaggagggacaggggtaagaggcctcgtcagtagtgttctacaccttcagtgcttatgtgaccctttcttttggcttacaaatatgtaaagcagtactacttttgcttttactactgcagtactacttgtgtttctctcgcctatatagttgttttcattcatatggtgctagaacaacttatgctcacgaaaacacactttcggcgcttcacggtagtgtcagatccactagctgcacagtccaccacagcacacatgaaaagcgccagctcgagtagtcactatcaactttcggtgctgcctgctgacataaagtgaatcacgcccgcgcgtgctcgtcttgtcacatctaatgaataatgtatatcattaagtgcacaaatattgcactgaaaacaagctgaaggcaacctcttcatatcttctttccaactagcacacacctaacgagaatggaagcgccattacttgagcgtctcaactggcgaagcgatcctttcgctggttggtttctaccatggtgtgaccgtcctttgtgcgattgtggagatggatgcatactcaagtcttccctcatgatacaaactcggggcaagagattcttccaatgcacgaactttgatcaggtatgattcatctattcgaagttcaaatggataaaaactaacttcttcgtacacaatcgtaacatcttacgcagacatatcgtccaatgtgcaacttcatcgagtgggtagacatggagaacccacaaaacgacggaacacgtgcatacccatgtagtgaaacaagatcggactacctaaggcggaaggatgagcatgaacgccgaattgctgctgaggctttagaatggcaggtaaatcccctaggactccccacgtagcgtgagtgtccggagtgtcgttgtggtgaccgttgtcaggtcataaggtccgtaaggcaccgaactcgaggacaaaggtgtttcgtgtgtccaaacattgtcgacgatgatttcgtggtaattacaactattcttttcatcactcctctgtactatcattaacttaactatccccacaatggatgtacataggaggatgtaaggaaatgtcaattcgtacaatggattgacacagtcagagttacttccagtggcgggccgataacgtaacctgaaccgaccacacagttcattcatgcttggatggagtacgaacgtcgggtgaaaattgcaagcttagactggaggaacaatccattagggttacctagctggtccgagcgtccaaagtgtgggtgcagagatcgctgccaagtggctaccacatttgcagaacagacatttggaaggagatattttgtctgccccaatgtagacaacaatttcgttgtatgtctaaccgtttccaaaatctgctatgatttgcacaaaatttctacccaaactgaataacattactattttttcatggcaatccaaggatgtgtggatttactcggtggatcgacaatgtcactccatcatatcatggccaaaagatagcagagtcagaaacacaagtagagtatcaacgattgaaggaccacgagaatgcaatgcatattgaccaacctagaaggggctga</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0285700, RefSeq:Os02g0285700