Os10g0407500

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Revision as of 08:37, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0407500| Description = Exonuclease domain containing protein| Version = NM_001071105.2 GI:297610460 GeneID:4348592| Length = 5083 bp| Defi...")
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Gene Name

Os10g0407500

Description

Exonuclease domain containing protein

Version

NM_001071105.2 GI:297610460 GeneID:4348592

Length

5083 bp

Definition

Oryza sativa Japonica Group Os10g0407500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:14311884..14316966

Sequence Coding Region

14311884..14312223,14312766..14312935,14313137..14313183,14313821..14313884,14314306..14314943
,14315034..14315253,14316892..14316966

Expression

GEO Profiles:Os10g0407500

Genome Context

<gbrowseImage1> name=NC_008403:14311884..14316966 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:14311884..14316966 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagatggcgacgagcgcgggggaggggacgagcggtggtggtggaggaggaggaggagctgtgccggaggcggggggccccgagatcgcgttcttcgacgtggagacctccgtgccgcagcgggcggggcaggggtacgcgctgctggagttcggggccatcctcgtgtgcccgcggcggctcgtcgtggtggggtcctacgccacgctcgtccgccccggcgacctcggggtcgtctccgcggcgtccgtgcgctgcaacggcatcacccgcgacgccgtcgccgccgccccggccttccgcgacgtcgccgacgccgtctacagcgtccttcacgagttctcaatagggcgtgtctgggctggtcacaacatcgtaaggtttgacttggccagaataagggaagcattcgctgaaattggacggccacctccggaaccaaaggggatgatcgacaccttgcctctgcttacccagaaatttgggaggagagcaggggacatgaagatggcaagcttggcaaattactttggtctggggcgacaaagtcacaggagccttgatgatgttaggatgaatcttgaagttctcaagtattgtgctacagttctcttcttggaggcaagtcttccaggagtgctgactgttgagaacctggtggagcgtgcaattacaaggagccaagctaatggagctgcttctcctgaggtgccaaaacctgtagcacggtcttcacctgattcctcaaaacggcaacgaacaatttctcgagttgacaatgcaatccaagctggaggtaaccaacaatcaatcgatcctgcaacaaacaaggaacccattgagttgatatccaatatcgaggaaatgacattaggttctggcatacagatcgatgcaagttctagtgggttttctgggttcctcgagccagatgacgtttcaactgagtccatccaaatttctgttccttcttcctaccgattaactcgaaaaacatctatcaagcacaaaggtagcccgatccaactttgttgtgctggtctgcggatccagtttggagtcagcacaaagttcctagacagcgcaggtcgcccaaagttgaacatactggttgacatccctgagaatctcagtaaaattctagaattctgtgatggtatcgctcagaaatcatctcaggattctgggagcacttctgaatggagaccattgattaaaaaatatggttatgtgaattgtcctactgtccgcctacacatccccactattgtcagcggtgaagctgcgacctatgggaccgaaatataccagaaagaggctagcggcaacattcagaagctagttttcagcaaggtagatgtcgcggagctggactcttggtttgttcgagggaacatggtggacgcattcttctctctggaactatatgactacgaagaaaatgctggtatccggctggttgctaagaagctggttgcaaagtgtactactgcaaaatcaaacattactggccaccaagcaatcttcaagaaaaccatggaaaagatctga</cdnaseq>

Protein Sequence

<aaseq>MEMATSAGEGTSGGGGGGGGAVPEAGGPEIAFFDVETSVPQRAG QGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCNGITRDAVAAAPAFR DVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMIDTLPLLTQ KFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLPGVLTVE NLVERAITRSQANGAASPEVPKPVARSSPDSSKRQRTISRVDNAIQAGGNQQSIDPAT NKEPIELISNIEEMTLGSGIQIDASSSGFSGFLEPDDVSTESIQISVPSSYRLTRKTS IKHKGSPIQLCCAGLRIQFGVSTKFLDSAGRPKLNILVDIPENLSKILEFCDGIAQKS SQDSGSTSEWRPLIKKYGYVNCPTVRLHIPTIVSGEAATYGTEIYQKEASGNIQKLVF SKVDVAELDSWFVRGNMVDAFFSLELYDYEENAGIRLVAKKLVAKCTTAKSNITGHQA IFKKTMEKI</aaseq>

Gene Sequence

<dnaseqindica>1..340#883..1052#1254..1300#1938..2001#2423..3060#3151..3370#5009..5083#atggagatggcgacgagcgcgggggaggggacgagcggtggtggtggaggaggaggaggagctgtgccggaggcggggggccccgagatcgcgttcttcgacgtggagacctccgtgccgcagcgggcggggcaggggtacgcgctgctggagttcggggccatcctcgtgtgcccgcggcggctcgtcgtggtggggtcctacgccacgctcgtccgccccggcgacctcggggtcgtctccgcggcgtccgtgcgctgcaacggcatcacccgcgacgccgtcgccgccgccccggccttccgcgacgtcgccgacgccgtctacagcgtccttcacggtgagatgcgagaaccccctctgtctggcttggccaccgcgtgaccgacgcgtgtcggctcctccacatttaggaattcctgctctttcttttttacctgccaattttatcctaaactaatccaggagctttaaggactagtaaattgcgccatctttcctgctcacccttatcctttttgatgctataattgcaaaattggtagtggtttagctataattctaaaattgggagtggtttagcttgtgtgtagctcacaatgtgctgtcttgtagttgttgaaatcttcatttagttgttctcacaaactaaggacatcattagtcattagcagtaattaaatgcaagcttaagctgcgcaaagagtattcaggagttgtcaataccaaatcttgtttagtacaaaggctgtagttgttggattttgttcattacgttgaaaagtagcactgaagtttagaggttataaacgctgtctttgtgtatagctagcataaatagctgccatattttagttggtttgataatgttctaaccttgagagttctcaatagggcgtgtctgggctggtcacaacatcgtaaggtttgacttggccagaataagggaagcattcgctgaaattggacggccacctccggaaccaaaggggatgatcgacaccttgcctctgcttacccagaaatttgggaggagagcaggggacatgaaggtacataaccttgtgtttttgcatgtaatcacttgtaattttggcaataatgctttagttatacatgtgtcataatggatagtcagagttctacatatgctgaagaatttgaccttcaatgatagttcttacctttaaactatcctttttgtcttttgaatgaatatgcctgatttttcctcttatctgcttcatctgcagatggcaagcttggcaaattactttggtctggggcgacaaagtcacaggtatattatatgcgcatgtaaaatccaaattttatagctgcatctaatttgtcgtttcttctagtatttcttatccttacctatttgaattgaaagcacatatctgcccttggcatcatgtcgtgtaacttttcttaccatccatggagaggcaatttggtcacccagcaaagcagagtcagcttgcagtgcctgttccatttggaatatatagtttgcaaaacttttgtgggacagtgctgttttttacttacccacagttgtcttttggtgtcaataagtcaaccaggatcctgaaatccagtccctgtagatcttacccccctcatgttgcgcagactagtatccgttccactccctaaagctctatgaaaactattatttattattttaatagataatatgatggaaccataaatcgtccatcagtgctactcctggtactaactatacacctgatgtgaatgataactaatagtaggtaactttatcatgatcccacttcacatcttcaagcattcgctattgcgataggggattaggaatagttatctcccttttttttgggttttagtatatatcctacaatgaatgaagtaatgatgtttttcgaatttgctccacgatttgtttgcaggagccttgatgatgttaggatgaatcttgaagttctcaagtattgtgctacagttctcttcttggtatgtttggattaccttctgattttcacctgcctatagttttatgatgtggacagtaacattgtccaatgcttctttgcctgaaatcactatttgtttcttttatttttttccatgcattggtcaagtggtttaactgttgcaatggaagtatgatatgttcattatctggaaacttctgcattgaaatgaatgaactacaggatcttggcaactagctagcttttcttttgctgtcaataattgaattttgcactgctgtagtttgtagtagcaacgtattattgagataatcgctgatatgtttgtagtgagatggatagccaatcaattatcatttttttacaatatgtttgtaatttactgatgtgtctcactgtttgatataatctattggctaaatcgtgaagttcttccacaggaggcaagtcttccaggagtgctgactgttgagaacctggtggagcgtgcaattacaaggagccaagctaatggagctgcttctcctgaggtgccaaaacctgtagcacggtcttcacctgattcctcaaaacggcaacgaacaatttctcgagttgacaatgcaatccaagctggaggtaaccaacaatcaatcgatcctgcaacaaacaaggaacccattgagttgatatccaatatcgaggaaatgacattaggttctggcatacagatcgatgcaagttctagtgggttttctgggttcctcgagccagatgacgtttcaactgagtccatccaaatttctgttccttcttcctaccgattaactcgaaaaacatctatcaagcacaaaggtagcccgatccaactttgttgtgctggtctgcggatccagtttggagtcagcacaaagttcctagacagcgcaggtcgcccaaagttgaacatactggttgacatccctgagaatctcagtaaaattctagaattctgtgatggtatcgctcagaaatcatctcaggattctgggagcacttctgaatggagaccattgattaaaaaatatggttatgtgaattgtcctactgtccgcctacagtgagtcatatcattctctctcatttttaacctcaaagcacaaacattatcccacttttcagaagctctaacagcaacctttcattgcagcatccccactattgtcagcggtgaagctgcgacctatgggaccgaaatataccagaaagaggctagcggcaacattcagaagctagttttcagcaaggtagatgtcgcggagctggactcttggtttgttcgagggaacatggtggacgcattcttctctctggaactatatgactacgaagaaaatgctggtatccggctggttgctaagaagctggttgtacaatccaaatagcatcggactaactgcttatgatcctagtgctagaaactaactcttgcactaatttagtggtgttagccagatgtaaataattcaaagtgttgattagatctgaccagcagcacatgttgatcctgaactaggaatttatatgcgctgtaaaatattaacagtacctctatgcctttgatgctctgtaataaaatctccaggtgttatttccttgtatttagtatggataatccatttatttcgtcatgttctcattgttgcagcttcaatttgaatgtcttattttgtagagtatcgaaacgtattggtgataaatcgcaacgcttcatttcaacaatattatgttgggtgcacaaaccattgcaagtaaatttcattcgtcatccttgagaccaccttaccattgtctgttttgggggagagctataggactaggaaccaaaacttaacaaaccatgatgtcctatggcaaatttggcaatgaactcgaagaatccattttgcaaagttcatcttcctctggatgccattcatgagagattacatatatcaaggctgtgtttagttgagggggaagtttggattttggttgaaattgaagataatgtgactgaaaagttgtgtgtatatgacaggttgatgtgatggaaaatgactgaagtttggatctaaacacaacccaaactacaattctgtcaacattgatagctggaggttaaaactaatttcttcaaatagttcgtgaagtccttgcgagaaacataattgactctaatctttccacatctaaacaaggttgaagcattgatagaaaattatttatgtttgcttctaaggaagactccagattagagtcttcctggtacgtcccaaacccatgtaatagaagcattgtagcttggaacattgtgtcaataattcctttctcaccgtatggcaatttaatgaaaggacataggaagtttagtgggtaaaaagggcatttcttgtgtactaaaagtacggccctgcttcagtgttgttccttgtacttagtatttttttttaagagtcttcttgtacttgctactccctcattttctaaatatttaacgctgttgatttttttaaacatatttgtccattcgtcttattaaaaaaaagtaattattaatttctttcctattatttgatttattgttaaatatactttcattaatacatatagttttgcatatttcacacatttttttaataaaacgaacggtcaaacatatgctaaaaaatcaacaatgtcaaacatttaaaaatggagggagtataatatttgtactagcttaatttagctctaggagagcttctacttctgagttatgcagacacatggcagtttccagatgcaaactttgcaatgccttcttgatttatagccctgcattcagcaatgctagttaactttgatataaagtcccacataatgtttgctttatactccagtatatattcaagccatgaagtttaaaagtatatagttgatattaattgcacagattaacgattccattcgtgattcttgatcagaattttatacggggatttcttttgttatgattaaccagtatactgctgcattttctgtttcaggcaaagtgtactactgcaaaatcaaacattactggccaccaagcaatcttcaagaaaaccatggaaaagatctga</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0407500, RefSeq:Os10g0407500