Os10g0417600

From RiceWiki
Revision as of 08:38, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0417600| Description = NAD-dependent epimerase/dehydratase family protein| Version = NM_001071144.1 GI:115482031 GeneID:4348636| Length = 3...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os10g0417600

Description

NAD-dependent epimerase/dehydratase family protein

Version

NM_001071144.1 GI:115482031 GeneID:4348636

Length

3295 bp

Definition

Oryza sativa Japonica Group Os10g0417600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:15097250..15100544

Sequence Coding Region

15098578..15098993,15099101..15099194,15099282..15099411,15099491..15099623,15099720..15099927
,15100061..15100216

Expression

GEO Profiles:Os10g0417600

Genome Context

<gbrowseImage1> name=NC_008403:15097250..15100544 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:15097250..15100544 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggagctcggagaagaacggaactgcttatggcgagtacacctatgctgaactggagagggagcagtactggccgtctgagaagctgaggatatcgatcaccggagctggtggtttcattggatcccacattgctcgccgtctgaagagcgaggggcattacatcatcgcctccgactggaagaagaatgagcacatgactgaggacatgttctgccatgagttccaccttgttgaccttagggtcatggacaactgcctcaaggtcaccaacggcgtcgaccatgtgttcaaccttgccgctgatatgggtggtatggggttcattcagtccaaccactctgtgatcatgtacaacaacaccatgatcagtttcaacatgctcgaggctgcacgtatcaatggtgtgaagaggttcttctatgcctcaagtgcatgcatttaccctgaattcaagcagcttgaaactaacgttagcctgaaggaatctgatgcctggcctgctgagcctcaagatgcctatggtttggagaagcttgcaactgaggagctctgcaagcactacaccaaggactttggcattgagtgccgtgttggccgcttccacaacatatatggcccctttggaacatggaaaggtggccgtgagaaggcaccagctgcattctgcaggaaggctcagacttccactgacaggtttgagatgtggggtgatggcctccagacccggtccttcacattcatagatgagtgtgttgagggtgttctgaggttgacaaagtcggacttccgtgagccagtgaacattggaagcgatgaaatggtaagcatgaacgagatggctgaaatcattctcagcttcgaggatagggagctgcccatccaccacatccctggacccgagggtgtccgtggccgtaactccgacaacaccctcatcaaggagaagcttggctgggcacccacaatgaagctcaaggacgggctgaggttcacctacttctggatcaaggagcagatagagaaggagaagacccagggcgtcgacatcgcgggttacggctcatccaaggtggtgtccacccaggccccggttcagctgggctccctccgtgctgccgatggcaaggagtaa</cdnaseq>

Protein Sequence

<aaseq>MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSH IARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAA DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVS LKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREK APAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMV SMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY FWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE</aaseq>

Gene Sequence

<dnaseqindica>1329..1744#1852..1945#2033..2162#2242..2374#2471..2678#2812..2967#ctccctctcatcatcatcatcatcctcctcctccctatccccttctcccccctctctctctctctccaccccgcgcggcggccgcttccgatccctctccgaccgaccaagcgccgcctccaaggtatttccctctcctgatcctcctccgtgcttggtggtggtggtggtggtggtgatggtgttcatcctctgtttgttgttaggggggaagaaaatccaatccgtaaatcctgggtttttcttcttcttgtttttttctcctcgggacgggtccatccttccggggggcgattagaggtttgtttccggtagattttattcagaggattggagctcaagtgctgaaacccacatgcatgcatgcctgcctgctattgtgttgtctgaatacgaaatatgcggggggtctctagcttgccttgccccgcgctgttaggagtagttgagatggtgtttccggatgagctctgcacttgctgctactgttacttgttactcttaggagtagttgagatggtctgcttgtaatatttccatcagagatcatggtggcaagaagattattggttgctccatgcttgaacaggctgatattgccctgtataatctttttgctgtgtttttggagtttgtcttgtcaaaaaggcagtgctcaaatggttggttggaacggctaccatgatgtggggaacgatagaaatgggcttaaaaatttcatccatgagtgtgctgtcatttttcttttttcaccgagagagagaaggaagcattgcttttcagatagtaacatcttcttgtcttatttttggtagtgagggttcatgttcttctccatatgctaactgttggaatgagctggatctacaggaatatttaacttataaagattagggactgagtgcatgtgaccattattggccgttgacgtgctggatttattttttttttgttcatcattagtttcaaagattcctctccccgagtagctattggttatgcctttgtgttctctttccatgaattatgtgtgacatgtgagaaaagaatcagtgattcactctttcagaaattggatggacgtgtagaattaataaggcggcttgtcatgttccctttatcattctctctgtcaaaaaaaaaacggtgctactgatctttcgattgacgtatccttgtctgaattttacgcttttttttctcatgtggtccatgaaaaaaaaattattttggtgctaaacttagctatcaatgttttggccaactcactaaatttcttgcatatatatcctcttttgcatattgattcagattccttctttgacagaatggggagctcggagaagaacggaactgcttatggcgagtacacctatgctgaactggagagggagcagtactggccgtctgagaagctgaggatatcgatcaccggagctggtggtttcattggatcccacattgctcgccgtctgaagagcgaggggcattacatcatcgcctccgactggaagaagaatgagcacatgactgaggacatgttctgccatgagttccaccttgttgaccttagggtcatggacaactgcctcaaggtcaccaacggcgtcgaccatgtgttcaaccttgccgctgatatgggtggtatggggttcattcagtccaaccactctgtgatcatgtacaacaacaccatgatcagtttcaacatgctcgaggctgcacgtatcaatggtgtgaagaggtccggctctctcttttttttttacatatttttactgttatatctcagcttagcctgagcttgttttatccatatcaattcatttgttacaactaatggtcctacaggttcttctatgcctcaagtgcatgcatttaccctgaattcaagcagcttgaaactaacgttagcctgaaggaatctgatgcctggcctgctgaggtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccagcctcaagatgcctatggtttggagaagcttgcaactgaggagctctgcaagcactacaccaaggactttggcattgagtgccgtgttggccgcttccacaacatatatggcccctttggaacatggaaaggtagaagtttaaccaattctccaagttattgaactgtacttgtactggggcatccttaactcaatttgtcaatggataggtggccgtgagaaggcaccagctgcattctgcaggaaggctcagacttccactgacaggtttgagatgtggggtgatggcctccagacccggtccttcacattcatagatgagtgtgttgagggtgttctgaggtatgcagctacttgtcacattattatctagatagaacactaaaccacacctgattagatgagaagctggtctaatatgatacaaacaatttctaggttgacaaagtcggacttccgtgagccagtgaacattggaagcgatgaaatggtaagcatgaacgagatggctgaaatcattctcagcttcgaggatagggagctgcccatccaccacatccctggacccgagggtgtccgtggccgtaactccgacaacaccctcatcaaggagaagcttggctgggcacccacaatgaagctcaaggtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtcagatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgatgaacaggacgggctgaggttcacctacttctggatcaaggagcagatagagaaggagaagacccagggcgtcgacatcgcgggttacggctcatccaaggtggtgtccacccaggccccggttcagctgggctccctccgtgctgccgatggcaaggagtaatttcaaagctgctacaccatgaagatcaatcagctcctctcagcttgatcgtggccataccttacttcgctacagatagctcacagaaatgaattcttcttggaaatcttgcaacctttcagaacaacaacagccgttcttcctgtcgttataactcatatgcagtacaccggtttcttgtgtttaaaaagctatactcgagatttcttcctcttttttttttcgcgtcgtgttggaaattcttcgtatggattacattttgtcatatgaacaatgaaacaatgggaatgctctgcattacctttatgaatagatgatgtgttcttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0417600, RefSeq:Os10g0417600