Os02g0542200

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Revision as of 02:34, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0542200| Description = FAR1 domain containing protein| Version = NM_001053602.1 GI:115446574 GeneID:4329597| Length = 5213 bp| Definition ...")
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Gene Name

Os02g0542200

Description

FAR1 domain containing protein

Version

NM_001053602.1 GI:115446574 GeneID:4329597

Length

5213 bp

Definition

Oryza sativa Japonica Group Os02g0542200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:20993375..20998587

Sequence Coding Region

20994111..20994119,20994697..20994756,20994857..20994955,20995607..20997813,20998438..20998585

Expression

GEO Profiles:Os02g0542200

Genome Context

<gbrowseImage1> name=NC_008395:20993375..20998587 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:20993375..20998587 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>aaaaaaaagaagacacgagacgccaacaggaaagcacttcgcctcgccgcgccgcgccgcccgttgctgccggcgatgagctcgccctcgccggagccaccccccaaccctacacctgtccctcctcctcctcctcccgctccctcaggtaacacagctgttgaggacagcgaagcaggtccttgcattcccagactccaagcagcgactggagattatacaccatggttagggcaagagtttgcgtctgaacatgaagcatatgaattctatcgctattacgcatggaagttggggttcagtgtccgaagagaatatgcaaacaaaagtaggaaaactggtgaaataacctcaagaaagtttgtttgttcgagggaaggattcaaagccccagacaaacgaaccaaccatacgaggactccacagcctgatacaagaacaggatgccacgctaatttagtcatcaggcgcaaaaatgatacttcaaagtatgaggtatatgctttcgaggcacagcataatcatcccttgttcattccatcctgtgcaaatccactgcaaaaaaagttaagtgatgttcagtcttctgatgctgataactctgctagtgtaacacatgctagcgaacctgatagcagaaattccattcttgccgagaaaactattaagtccccagaaatctctcagcgctctctgcatactaggcggcagcgggaaattaagtgtggggaagccagtgctctgttaaactacctccaggatcaatgtcgagcagatcctttattttatcatgctgtacagctggatgctgaagataaagttacaaacattttctgggccgatgcaaagatggtaattgattttggtcaatttggtgatgttgtttcctttgatattgtccccagaaacaacatgaatctccgaccttttgcttcttttgttggatttaacaattatggggagactgttttgcttggaatggcacttatgtatgatgatagccttgaatcattccagtggttgtttgagaccttcttgcatgcgatgtctggacaagcaccgcggactgtcttttcacgccaagacgcaattgtatcaaaggccatctcactggtgatgcctgacacatgccatgccatatgtacatggaacctgaagcagtctgcaaaaagtaacctcaatcaccttattagaggggattgtggtttcataaaggaattcaaggcatgcatcaatgattatgaggaggaggtggagttttttactgcttgggaagctatgatcagtaaatataaccttcacaacaacgtgtggttgcagaaggtatttgaagaaaaagagaagtgggctaggccatacacaaagtggatattttcagctgggatgaagaacacacaattaaatgaacgtctacattctgacgttcgggattatttgaaatctgatgtagatattatttcgttcttgaagcatcttaagaaattggtcaatgatagacggtacatagaattggaggttgaatttagttcgaggctcaagttgccagacttcaagattagagctcctattctgagacaagcttctgaggcctatactggtatgatatttcagcttttccaagaagaatacgaagagtttcagtcagcttacattgtgactcgtgatgaaagtggtcccagccgtgaatatattgttgccattcttgagaaagaaagacggtataaagttcatggaaacccttgtgagcagacagttacatgctcatgtaggaagtttgagacacttggtttcctgtgtagccatgctttgaaagttttagatacaatggacataaagtatatgcctgataggtacatcctgaagcgatggaccaaatatggaaggtgtttgactgcaccgcaggttgaaggtcgaaaggttcaggcagataccacattagaattttctagccgctatgaatacttgtgcccagtatatgttaggcttgttgctcgagcatcagaatgcgaggagtcgtacagagtattagatcaatgttcagtagaactgggtaagaaaattgaagaaatcctgcagaaacaaacaagcattgatgcgtcagctcctcagtctgatattgaggatgtaacaatatccttgtctgcgaatggtactgacaatgaatcagaaagagcactggattattcaagcagcacaagaccgaagcgacgaaaaaagaaaggtcgtaatgctaaaagccaacgaaaaagttgtattgagaaaggtttacaaaaaaccaagaaagtgcaaccagaacaatccccaatacaatataccatgttggatgctgctcaacctggaaatgttctatttcagggtcttgacatttctaatccatttccaatggggcaactgaattatggaggagtgcagtcacaaccaggcctatgcccaagcttacctactgtatcaagagaacttggttttgctgcatacctttctcagccatcaagtaacaatcaacataatcagcagggtttgtag</cdnaseq>

Protein Sequence

<aaseq>KKKKTRDANRKALRLAAPRRPLLPAMSSPSPEPPPNPTPVPPPP PPAPSGNTAVEDSEAGPCIPRLQAATGDYTPWLGQEFASEHEAYEFYRYYAWKLGFSV RREYANKSRKTGEITSRKFVCSREGFKAPDKRTNHTRTPQPDTRTGCHANLVIRRKND TSKYEVYAFEAQHNHPLFIPSCANPLQKKLSDVQSSDADNSASVTHASEPDSRNSILA EKTIKSPEISQRSLHTRRQREIKCGEASALLNYLQDQCRADPLFYHAVQLDAEDKVTN IFWADAKMVIDFGQFGDVVSFDIVPRNNMNLRPFASFVGFNNYGETVLLGMALMYDDS LESFQWLFETFLHAMSGQAPRTVFSRQDAIVSKAISLVMPDTCHAICTWNLKQSAKSN LNHLIRGDCGFIKEFKACINDYEEEVEFFTAWEAMISKYNLHNNVWLQKVFEEKEKWA RPYTKWIFSAGMKNTQLNERLHSDVRDYLKSDVDIISFLKHLKKLVNDRRYIELEVEF SSRLKLPDFKIRAPILRQASEAYTGMIFQLFQEEYEEFQSAYIVTRDESGPSREYIVA ILEKERRYKVHGNPCEQTVTCSCRKFETLGFLCSHALKVLDTMDIKYMPDRYILKRWT KYGRCLTAPQVEGRKVQADTTLEFSSRYEYLCPVYVRLVARASECEESYRVLDQCSVE LGKKIEEILQKQTSIDASAPQSDIEDVTISLSANGTDNESERALDYSSSTRPKRRKKK GRNAKSQRKSCIEKGLQKTKKVQPEQSPIQYTMLDAAQPGNVLFQGLDISNPFPMGQL NYGGVQSQPGLCPSLPTVSRELGFAAYLSQPSSNNQHNQQGL</aaseq>

Gene Sequence

<dnaseqindica>4469..4477#3832..3891#3633..3731#775..2981#3..150#aaaaaaaaaagaagacacgagacgccaacaggaaagcacttcgcctcgccgcgccgcgccgcccgttgctgccggcgatgagctcgccctcgccggagccaccccccaaccctacacctgtccctcctcctcctcctcccgctccctcaggtctccctctcagcctctctctctctccgcacccccttcgctctctaccaaaccccaagctgctcagtttttttttttttttttttttttgggcttcaaaacctcaagctgctcgggcgttggacctgtcgatggcttcggattttaggtggaaggagagcaccggtccctcgaatcgtagcattcgctttgtacggccctaacggtatcgtttttggttgcagatgtcgttgttgatgtgcgcttagctcaaaccctagctgtacactcaaaattgggtctgaaattcgatctgtttttttactcaaagttgcagggagaataaagagtaaaatgttttattagggcttcttgaagaatgtgcaacgcgattgggtgttgcagggagaatagtgcactagtgccggtaaattattgtctttcatcaaattgtggcatttgcggttgcaaattgataatagtgcccaagtaagaccgtgccacacttaataaaccgcaagatatccattatgtttgcacatgactttctagttgatcatattcttgattttcaattgtcctatgcagatacgtttgcattttgatcatgcttttagatttaaattccttcttaaaataatttaggtaacacagctgttgaggacagcgaagcaggtccttgcattcccagactccaagcagcgactggagattatacaccatggttagggcaagagtttgcgtctgaacatgaagcatatgaattctatcgctattacgcatggaagttggggttcagtgtccgaagagaatatgcaaacaaaagtaggaaaactggtgaaataacctcaagaaagtttgtttgttcgagggaaggattcaaagccccagacaaacgaaccaaccatacgaggactccacagcctgatacaagaacaggatgccacgctaatttagtcatcaggcgcaaaaatgatacttcaaagtatgaggtatatgctttcgaggcacagcataatcatcccttgttcattccatcctgtgcaaatccactgcaaaaaaagttaagtgatgttcagtcttctgatgctgataactctgctagtgtaacacatgctagcgaacctgatagcagaaattccattcttgccgagaaaactattaagtccccagaaatctctcagcgctctctgcatactaggcggcagcgggaaattaagtgtggggaagccagtgctctgttaaactacctccaggatcaatgtcgagcagatcctttattttatcatgctgtacagctggatgctgaagataaagttacaaacattttctgggccgatgcaaagatggtaattgattttggtcaatttggtgatgttgtttcctttgatattgtccccagaaacaacatgaatctccgaccttttgcttcttttgttggatttaacaattatggggagactgttttgcttggaatggcacttatgtatgatgatagccttgaatcattccagtggttgtttgagaccttcttgcatgcgatgtctggacaagcaccgcggactgtcttttcacgccaagacgcaattgtatcaaaggccatctcactggtgatgcctgacacatgccatgccatatgtacatggaacctgaagcagtctgcaaaaagtaacctcaatcaccttattagaggggattgtggtttcataaaggaattcaaggcatgcatcaatgattatgaggaggaggtggagttttttactgcttgggaagctatgatcagtaaatataaccttcacaacaacgtgtggttgcagaaggtatttgaagaaaaagagaagtgggctaggccatacacaaagtggatattttcagctgggatgaagaacacacaattaaatgaacgtctacattctgacgttcgggattatttgaaatctgatgtagatattatttcgttcttgaagcatcttaagaaattggtcaatgatagacggtacatagaattggaggttgaatttagttcgaggctcaagttgccagacttcaagattagagctcctattctgagacaagcttctgaggcctatactggtatgatatttcagcttttccaagaagaatacgaagagtttcagtcagcttacattgtgactcgtgatgaaagtggtcccagccgtgaatatattgttgccattcttgagaaagaaagacggtataaagttcatggaaacccttgtgagcagacagttacatgctcatgtaggaagtttgagacacttggtttcctgtgtagccatgctttgaaagttttagatacaatggacataaagtatatgcctgataggtacatcctgaagcgatggaccaaatatggaaggtgtttgactgcaccgcaggttgaaggtcgaaaggttcaggcagataccacattagaattttctagccgctatgaatacttgtgcccagtatatgttaggcttgttgctcgagcatcagaatgcgaggagtcgtacagagtattagatcaatgttcagtagaactgggtaagaaaattgaagaaatcctgcagaaacaaacaagcattgatgcgtcagctcctcagtctgatattgaggatgtaacaatatccttgtctgcgaatggtactgacaatgaatcagaaagagcactggattattcaagcagcacaagaccgaagcgacgaaaaaagaaaggtcgtaatgctaaaagccaacgaaaaagttgtattgagaaaggtttacaaaaaaccaagaaagtgcaaccagaacaatccccaatacaatataccatgttggatgctgctcaacctggaaatgttctatttcaggtaatttcagcattgttgttcattatatggtgatggcataacgtgatagtaatcacaaactgatattattctaaacggtagccagttggtggtgacatcaagaacctttgctttatgtaaactcccaacaatcctatattgctacagtcatttcaattgagaattcctgtcagattgttctttttaatgtgatatgaactccatgcaaaattggaatcagtcacaaaaacctgtaacgtcaggttgtttctttttctattaaaattttatattgaacaagttatttttcatctcaattttgtagttcctaaggccttctacagcttttaagttctgcaatgcagaggttttctatttaaaatcctatgccataccaccatggactgtggtcataactgatagtagctcaaaggactatgattatgggtattttgggctggagaatcttgaattcactatagttcatgcctcagcaacgttttagtccaacattccaatgccgggccaattcatcacgccatctggattcttttcaatatatatgctgggcatggatgttagatgtacctgaagttgtgtagcctgttctaaccctgaggttagttattgtatgtaacatggttaatttttagttccctttttcattttcagggtcttgacatttctaatccatttccaatggggcaactgaattatggaggagtgcagtcacaaccaggcctatgcccaagcttacctactgtatcaagagtattgtcaattgcctgttactctctttttgataagaaatggtgccccttgcgccgtatctgaatattgaaaaaattacttacacggtcattgctttcaggaacttggttttgctgcatacctttctcagccatcaagtaacaatcaacataatcagcaggtataaattggtaaagtttcacagttgtctctttcctcactttcatgttgatgaagctttgaagttgccacctccttactttctaatttaataaagtgtttagattttttaactctcgtgtagctccatccactttggattttgcacttggcaatttagattctgaaaaaaactatacatatagagcattttaaggtacgtttacatgcagatatgatcaatttgtgctatacgagaaagaaaactaaatcgtcttatctttcatcaaagaaagaaagctgatctatctttacataatttttgttgcacacctatacatgattatatctttacataattttgtgtgtgaatataggtcaacatgctataaatgtttttattttcagaatttcctaaagtcacaatgtgcaagaattgaaaaatggctgtagctacacatgggtatagcaggatctttatctttaattaaactcagctttttgttaatcatggcccacgtcactgctctgttggccattaagcagttaatggatgaagttgctagtttatttctgctgtttattgtccatcttttcagggtttgtagaaatcaacagctctgttgaaaatcatagtgcacatttgtttcaatcttcaatataactcttgggacagaactggccctctgttgaagatcaaatcaacttctcaaattcatatcagtcagtaattgaggctaccaagaacagccatttacctgggtacatccatcagcagcatgttcaagccatgctacgcagcatgactagctgacgattagcagtgatagcgctcaccaagttccagagtgacagccacttggtgttgtgttgattagcaatttgaatgttaaattctcccgcatatcgctcatcaattgtgacataccaagccaccaaggacattcagagcacatccatgatctatcgtcagtagccaacgaagtgttagctctcttgcaatcgtcggatggtggatggtgcagaactgtagactattttgtagcctgtatgtgaacatgattacatgaaccatgtaggactagtctgtagaacagagtagagaactagagatgatatctttggaaggattagatttcatgccactcttagagttgcaggtttagaaatatgccattatgatggggatatgtcaatagcataagctcatttgtacaagcttgtcacacttgtgctttgattgtataaatgctaggagatgtgtctattttgtcaaattagtatctcttgctgactttcctaaatgttcgcaatttgatgaaatgcaagtaaaacgaattcatg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0542200, RefSeq:Os02g0542200