Os02g0571100

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Revision as of 02:36, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0571100| Description = Ent-copalyl diphosphate synthase| Version = NM_001186101.1 GI:297721334 GeneID:9266189| Length = 6502 bp| Definitio...")
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Gene Name

Os02g0571100

Description

Ent-copalyl diphosphate synthase

Version

NM_001186101.1 GI:297721334 GeneID:9266189

Length

6502 bp

Definition

Oryza sativa Japonica Group Os02g0571100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:22698925..22705426

Sequence Coding Region

22699129..22699252,22699903..22700512,22701025..22701239,22701540..22701660,22702128..22702240
,22702345..22702574,22702896..22703011,22703143..22703241,22703862..22704107
,22704559..22704658,22704748..22704954,22705052..22705273

Expression

GEO Profiles:Os02g0571100

Genome Context

<gbrowseImage1> name=NC_008395:22698925..22705426 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:22698925..22705426 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagatgcaggtgctcaccgctgcttcttcgctccctcgcgcgaccttgctccggccggcggctgccgagccatggcgccaatctttcctgcagctgcaggctcgtccaatccagcgaccaggtatcatgctacactgcaaggcccagctacaggggcaggaaacgcgcgagcgtcgtcagctcgacgacgatgaacacgctagaccaccacagggcggcgacgacgacgtcgcagcaagcaccagcgagctaccctacatgatcgagtccatcaaatccaagctgagggcggccaggaacagcctcggcgagaccaccgtctccgcctacgacacggcgtggatcgcgctcgtcaaccgcctcgacggcggcggcgagaggagcccccagttcccggaggccatcgactggatcgcccggaaccagctgcccgacggctcgtggggcgacgccggcatgttcatcgtccaggaccggctcatcaacacgctgggctgcgtcgtggcgctcgcgacgtggggcgtccacgaggagcagcgcgcgaggggcctcgcctacatccaggacaacctctggaggctcggcgaggacgacgaggagtggatgatggtcgggttcgagatcaccttccccgttctcctcgagaaggccaagaacctgggcctggacatcaactatgatgaccctgccttgcaggacatatatgccaagagacaattaaagctcgcaaagattcctagagaagcactgcatgctaggccgaccaccttgctccatagcttagagggaatggaaaacttggactgggaaaggttgctacagttcaagtgtccagctggctccttacattcctcacctgctgcgtcagcttacgctctcagcgaaacaggtgacaaggagttgctcgaatacctggaaacagccatcaacaattttgacggtggagcaccatgcacctaccctgtcgacaactttgaccgcttatggtcggtcgatcggttgaggcggctaggaatatcgaggtacttcacgagtgagattgaagaatacttggagtacgcctacaggcacctgagtccagatggcatgagctacggcgggctctgtccggtcaaggacatcgacgacacggccatggctttccgtctcctccgtctgcatggctacaatgtctcatcatcggtgttcaatcacttcgagaaggacggggagtacttctgcttcgcggggcagtcgagccagtcgctgacggcgatgtacaactcctaccgcgcctcgcagatcgtcttccccggcgacgacgacggcctggagcagctcagggcctactgccgcgccttcctcgaggagcggcgagccaccggcaacctcatggacaagtgggtcatcgccaatggcttgcccagcgaggtcgagtacgcgctggatttcccatggaaggcaagcttgccgcgagtcgagacgagggtgtatctggagcagtacggcgctagcgaggacgcgtggatcggcaagggactctacaggatgaccctagtcaacaacgacctgtaccttgaggcggcaaaggctgacttcaccaacttccagaggctctcccggctcgagtggctcagcctgaaaaggtggtacatcaggaacaatctgcaagcgcacggcgtgaccgaacagagcgtgctgagagcctacttcttagccgcggcgaacatcttcgagcccaaccgggcggcggaacgcctgggatgggctcgcacggcgatcctcgccgaggccatcgcgtcacacctccgacagtacagtgccaacggcgccgccgacggcatgacagagaggctcatcagtggactcgccagccacgactgggactggagggaatcaaaggattcagcagcgaggagcttactgtacgcacttgatgagctcatcgacctccatgcgttcggcaatgcttctgacagcctacgtgaagcgtggaagcagtggctcatgtcatggacaaacgagagccaaggatcaactggtggggataccgcattgctgctagttcgcacaatcgagatctgctcaggacggcacggttcagccgagcagagcctgaagaacagtgcagactacgccaggcttgagcagatcgcctcttccatgtgcagcaaacttgccaccaaaattcttgctcagaatggaggaagcatggacaacgttgagggtatagaccaggaagtggatgttgagatgaaagagctgatccagcgtgtctacgggagcagcagcaacgatgtcagcagcgtgacgaggcagacatttctcgacgtggtgaagagcttttgctacgtcgctcattgctcgcccgaaacaatcgatgggcacatctccaaggttttgttcgaggatgtcaattag</cdnaseq>

Protein Sequence

<aaseq>MQMQVLTAASSLPRATLLRPAAAEPWRQSFLQLQARPIQRPGIM LHCKAQLQGQETRERRQLDDDEHARPPQGGDDDVAASTSELPYMIESIKSKLRAARNS LGETTVSAYDTAWIALVNRLDGGGERSPQFPEAIDWIARNQLPDGSWGDAGMFIVQDR LINTLGCVVALATWGVHEEQRARGLAYIQDNLWRLGEDDEEWMMVGFEITFPVLLEKA KNLGLDINYDDPALQDIYAKRQLKLAKIPREALHARPTTLLHSLEGMENLDWERLLQF KCPAGSLHSSPAASAYALSETGDKELLEYLETAINNFDGGAPCTYPVDNFDRLWSVDR LRRLGISRYFTSEIEEYLEYAYRHLSPDGMSYGGLCPVKDIDDTAMAFRLLRLHGYNV SSSVFNHFEKDGEYFCFAGQSSQSLTAMYNSYRASQIVFPGDDDGLEQLRAYCRAFLE ERRATGNLMDKWVIANGLPSEVEYALDFPWKASLPRVETRVYLEQYGASEDAWIGKGL YRMTLVNNDLYLEAAKADFTNFQRLSRLEWLSLKRWYIRNNLQAHGVTEQSVLRAYFL AAANIFEPNRAAERLGWARTAILAEAIASHLRQYSANGAADGMTERLISGLASHDWDW RESKDSAARSLLYALDELIDLHAFGNASDSLREAWKQWLMSWTNESQGSTGGDTALLL VRTIEICSGRHGSAEQSLKNSADYARLEQIASSMCSKLATKILAQNGGSMDNVEGIDQ EVDVEMKELIQRVYGSSSNDVSSVTRQTFLDVVKSFCYVAHCSPETIDGHISKVLFED VN</aaseq>

Gene Sequence

<dnaseqindica>205..328#979..1588#2101..2315#2616..2736#3204..3316#3421..3650#3972..4087#4219..4317#4938..5183#5635..5734#5824..6030#6128..6349#actacgccgagacagtgtggtggtgagccggtgatcgatcttgcatcttgcgagcacacgggattccagatcgatcgagctatagctagctagctaattagttaccacgtacgaacgagtactttacaactcgatcagttcatcaaattaactcgatcagtggttaagtttcgcacgacacacgcgcgcggatcggaagccatcatgcagatgcaggtgctcaccgctgcttcttcgctccctcgcgcgaccttgctccggccggcggctgccgagccatggcgccaatctttcctgcagctgcaggctcgtccaatccagcgaccaggtaataattaatactccctccgtattttaatgtatgacgccgttgtctttttgaccaacgtttgacaattcgttttattcaaaatttccatataaatatgaaagtatttatatcatgcttaaagaacatttaatgatgaatcgagtcataataaaataaaataaatgataattgtataaatttttaaataagacgaatggtcaaacgttgaataaaaagttaacaacgttatacattaaaaaaatatggaggtagtaagtatcaactattcatcatgctgcgcgtgcattcgatcatatcctgatcgatcgatgacctcaacgaacggggcgtgcatacatgcatgcttacctgtgaactgttctactgcacacgttcatcgcacgattcataaatctatcgatggaggtcctgtttcgggtgtttctgataactacagctccttccagaatctcagctagctctcttgaataatttatttttacagtagattctaagaatttgtagctataaagtaaaatctaaaattgtaaaccatatatcagaagctgaaaaatccggtccttttaaattattttcggttggctactggtcagctacctctcagaaggcaaaacatagtctaatatccatgcctaattatctttcaggtatcatgctacactgcaaggcccagctacaggggcaggaaacgcgcgagcgtcgtcagctcgacgacgatgaacacgctagaccaccacagggcggcgacgacgacgtcgcagcaagcaccagcgagctaccctacatgatcgagtccatcaaatccaagctgagggcggccaggaacagcctcggcgagaccaccgtctccgcctacgacacggcgtggatcgcgctcgtcaaccgcctcgacggcggcggcgagaggagcccccagttcccggaggccatcgactggatcgcccggaaccagctgcccgacggctcgtggggcgacgccggcatgttcatcgtccaggaccggctcatcaacacgctgggctgcgtcgtggcgctcgcgacgtggggcgtccacgaggagcagcgcgcgaggggcctcgcctacatccaggacaacctctggaggctcggcgaggacgacgaggagtggatgatggtcgggttcgagatcaccttccccgttctcctcgagaaggccaagaacctgggcctggacatcaactatgatgaccctgccttgcaggacatatatgccaagagacaattaaagctcgcaaagtacgtgttacatacttcctctggcttttaataaatgattttattatcttatatatacacacacatatatatttgatcactcgtcttaataaaaagtttacgtaattattatttatttttattgtgactttatggttccataaagatccttcaaacattacttacatgtcaaaaagagaaaaaaaagcattacttacatttcctctatatatatttacctaaaattcttaaataagatgaatagttaaatgaaagtttcttaaatatactaacgaaattgaaaagggaaaatttacaattcttaagaggtatcaagagatattaaaaaatttaatgtaaatttggtatcttctaatactggagatactaattaagagctacaaaatattttacactagaaaatatagtactatctcccttagtatcactttctcaaaaaatgaaaatatttaatgatctatatgtctggaaccattagttaaccagctgtgacacttcgaaattaattgcaggattcctagagaagcactgcatgctaggccgaccaccttgctccatagcttagagggaatggaaaacttggactgggaaaggttgctacagttcaagtgtccagctggctccttacattcctcacctgctgcgtcagcttacgctctcagcgaaacaggtgacaaggagttgctcgaatacctggaaacagccatcaacaattttgacggtggaggtataaaaatcatgactagtactaaattttcagctagtcaaccaaaaccaggaagtgacgagaaaaacagattttattagggtggaattttaccgttcaggtttattttattcttcaatttaatttgttgagaaattttacggtttttgagagataccaagaggtaccaaaacttttaaactacatttttgtatgttttagtagtggatgtaccgagagctagctagatactcctaaatttcacaattgaaaatgttcctctttaaaaccgtaaaatcactgtaatttgtttcatttcagcaccatgcacctaccctgtcgacaactttgaccgcttatggtcggtcgatcggttgaggcggctaggaatatcgaggtacttcacgagtgagattgaagaatacttggagtacgcctacaggtaattaatttacaaacagctcgttcagaaacgaagtgttgcatgtatgcacattaatttttaggccttgtttagttcctattttttttcccaaaaacatcacatcgaatctttgaatatatgtatgaagcattaaatatagataaagtgaaaaactaactgcacagtttggaaatcgcgagacgaatcttttgtgcctaattagtctatgattagccataagtgctacatgcaacccacatacgctaataatggattaattaggcttaataaattcgtctcgtggtgttttcaggtgagttatgaaattagttttttcattcgtgtctgaaaactccttccgatatccaatcaaatctccgatgtgacacctaaaaattatcttttcacgaactaaaccagaccttaccgggtttgagacgaagtgtgactaactacatatacgcgtgcacatttgaaactaaaaggcacctgagtccagatggcatgagctacggcgggctctgtccggtcaaggacatcgacgacacggccatggctttccgtctcctccgtctgcatggctacaatgtctcatcatgtaaaaaaacaaaaactcacattttcttccaaaagccaatgcatgctgctttgatgagtacttaattactctgtggatgtctgtgtttttctcaatatttgtagcggtgttcaatcacttcgagaaggacggggagtacttctgcttcgcggggcagtcgagccagtcgctgacggcgatgtacaactcctaccgcgcctcgcagatcgtcttccccggcgacgacgacggcctggagcagctcagggcctactgccgcgccttcctcgaggagcggcgagccaccggcaacctcatggacaagtgggtcatcgccaatggcttgcccagcgaggtacgtactgttgcaaaattgataaatatatggttaattgtatttaatttgttactactaaatattagtaatgcatagggaaatttggcacagcatatttgttccatcctactgaaatttgacaattctaccaaatctaccgaaaatttggtattgctaaatttttttgaacagaaatattgtcaaattttggtgaacatgcccatatatagcaatctattttcgtagtagtaatcacaaagctcgatctagtacagttaagttgacaataatctattattattacttcgattgctgaaatgaaaatgggggcatatataggtcgagtacgcgctggatttcccatggaaggcaagcttgccgcgagtcgagacgagggtgtatctggagcagtacggcgctagcgaggacgcgtggatcggcaagggactctacaggtgacgagctcttcgatctaattaacctaggactacacgcaaaattaaaaaaaaaattagtacctgaaggctaaagccgcatcacgtacgtttttgtcatctttgttgtgtttttcttcgcatactttcaggatgaccctagtcaacaacgacctgtaccttgaggcggcaaaggctgacttcaccaacttccagaggctctcccggctcgagtggctcagcctgaaaaggtcaccacacgttcctcttaactatcaatatcacaacaacttaatttattccctaatcaactaacagtctgatacgacgaacctacgatgtttttatgtataacgcggttgacaaaatagtagtagtaattaattaatatattatgtgtcacttcacaaacatataaacttacattcaacatatacaattagtaacaaaattgacaaattagacaacgaattgtgtgctctactaaagtcaatttcatctttcttttattttcctatttatgtaatttgaaattactacatctgtcttaaaatgttgtaatctataatgggatttgactcacaattttactacatatataggatgagatttgatccatccaaatctcatcctagattgtaacattttgagatggaggaagtacatctatgtgcatgtatgtgcagtgataaatattcgttttgctaaaacttttaaatttttattatatcttttttggatgacatgaaaaacaaggagatgttcactcgagagagggacgaatagactttccgtctgatatgatattactctactgtgtaactaaagatgtttcttactcacaagcgtgcgtatgcatcatgctgcgcaggtggtacatcaggaacaatctgcaagcgcacggcgtgaccgaacagagcgtgctgagagcctacttcttagccgcggcgaacatcttcgagcccaaccgggcggcggaacgcctgggatgggctcgcacggcgatcctcgccgaggccatcgcgtcacacctccgacagtacagtgccaacggcgccgccgacggcatgacagagaggctcatcagtggactcgccagccacgactgggactggaggtttactcttcggccgctcatatatacttttttaatttcttcaatggatttcttccttcaaaaagaaaagaacataattaattattcttataatcaaattacattgttggagcaagtttaataataataataatagccaactattagctgcaaaaattaaaacatcatttataaccaacctaatagtccacttataaaatatttagttatagatatatatattgcatcattaatatctaatccactcatctttcacacatagtttttatttgaacctgtgttgcagctagctataaattaattaatttgtagcttatttttcttctctcttcttttccctcctcaacataagaacaaatgtgaggtggtagcttgtacaacccgattatatcatcttattgtgctcgcctatacagtgattcatgtaagattttcgtttgcgtgtgtgcagggaatcaaaggattcagcagcgaggagcttactgtacgcacttgatgagctcatcgacctccatgcgttcggcaatgcttctgacagcctacgtgaagcggtaaaattaactttaaactgatgacatggtgtgttaattaatttaccctgaaaattttaacacagttcaatgtgttctgttaactgcagtggaagcagtggctcatgtcatggacaaacgagagccaaggatcaactggtggggataccgcattgctgctagttcgcacaatcgagatctgctcaggacggcacggttcagccgagcagagcctgaagaacagtgcagactacgccaggcttgagcagatcgcctcttccatgtgcagcaaacttgccaccaaaattcttgctcaggtacgtgcattgatcactcatcatcacgaattacaaaaattaattaaaatgctgcttgaggttttttttttaaaaaacatgaattatgatcaaacagaatggaggaagcatggacaacgttgagggtatagaccaggaagtggatgttgagatgaaagagctgatccagcgtgtctacgggagcagcagcaacgatgtcagcagcgtgacgaggcagacatttctcgacgtggtgaagagcttttgctacgtcgctcattgctcgcccgaaacaatcgatgggcacatctccaaggttttgttcgaggatgtcaattaggaaaatggttgactactagaaaggcaataaaaacaagagttgtgtctaccagcatggctcgtaaagtgatgactgcgaaaattttctcaaagtgagatgaatttagtcgatatttgtttcacttgatggtacaccagatacacatgttgttat</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0571100, RefSeq:Os02g0571100