Os02g0580100

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Revision as of 02:37, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0580100| Description = Protein of unknown function DUF580 family protein| Version = NM_001053768.1 GI:115446906 GeneID:4329774| Length = 44...")
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Gene Name

Os02g0580100

Description

Protein of unknown function DUF580 family protein

Version

NM_001053768.1 GI:115446906 GeneID:4329774

Length

4498 bp

Definition

Oryza sativa Japonica Group Os02g0580100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:23185169..23189666

Sequence Coding Region

23185532..23185741,23185907..23186140,23186462..23186578,23186700..23186924,23187017..23187200
,23188907..23189508

Expression

GEO Profiles:Os02g0580100

Genome Context

<gbrowseImage1> name=NC_008395:23185169..23189666 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:23185169..23189666 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcgtcggagggggagagcgcgaaccctagcccctgccccgcggggcctgcggcggcggcggcggtggctggggcggcgggggtgggggtgggggcggcggcgtggccgaggcggcggtgccgggacgtgttctggctggtggtgttcctgctccacctgctcgtcttcggcggggcgctcgcgctgacggggctcaaccgcttcggccaggcggaccgcttcaacatcgaccgcttcaccaacctcaccgccgcgcctcgcttcgccgggtcgccggagcccgctcgggaggcgcccccgccgccgtcgctcgaggccgaggaggtcacccccaagtccgagctcacggagtcgtactggccctactacggcgccgcgggggccgtggggaccgccctcgcgtgggcgtggctggcggcggccgcggggaagaaggacggggggagggtggtcatgagggccgccgtgcacagcctcaccgcctacctcgcggtggtcagcgtgctctgcttctgggggaagcacttcttctggggcgtggcgttcgccgtcggcggagcgctgcacttcctctacgtcatgtcagttcttgataggttccccttcacaatgcttgtattgcagaaggcagtaagaatggtatgggaacttcctgatgtgatgaggatagcatatgcatttgtgttagtcatgctttgttggatggcattatggtcctttggagtgtctggcattcttgcttttcacatacctaatggagggcaatggtgggctcttttgattttctcagtcagtttattttggactggagctgtccttagtaacacagtccatgtcatagtatcagggatggtttttcttgttctcattcatggtggtcaagctgctgcatcgatgcccccaaaaccacttctaaaatcacttcagtacgctgtaacaacttcatttgggagcatttgctatggatcactttttacggctgctattaggactttacgttgggagattcgaggaattcgttctaaaataggcaacaatgagtgtttgctgtgctgtgttgactttttgtttcatatcgtggaaactcttgttcgcttcttcaacaaatatgcatatgtacagatagctatcaatggccagagtttcaatcgctcagctagggatgcttgggagttgttccaatcaactggcgttgaagcacttgttgcttatgactgttcaggtgctgtccttctgatgagcaccattttaggtgggttaattacaggaacatgtacgggtgtttggacatattttaaacaaagtgataaagctattatggttggctcaacctctatgctgatgggcatgatactggttggggtaactgttgtagttgtcgaaagtgcagttacatcgatatacatatgctatgctgaggatccccgtttaattcagagatgggatcctgatttttttgatcaaatgtcagaagcactacaccagcgactgcaataccgaagtgcgcgagctcaccaaatactgaacagccggcttgatcagttgccaaatacctcgagtatttga</cdnaseq>

Protein Sequence

<aaseq>MSSSEGESANPSPCPAGPAAAAAVAGAAGVGVGAAAWPRRRCRD VFWLVVFLLHLLVFGGALALTGLNRFGQADRFNIDRFTNLTAAPRFAGSPEPAREAPP PPSLEAEEVTPKSELTESYWPYYGAAGAVGTALAWAWLAAAAGKKDGGRVVMRAAVHS LTAYLAVVSVLCFWGKHFFWGVAFAVGGALHFLYVMSVLDRFPFTMLVLQKAVRMVWE LPDVMRIAYAFVLVMLCWMALWSFGVSGILAFHIPNGGQWWALLIFSVSLFWTGAVLS NTVHVIVSGMVFLVLIHGGQAAASMPPKPLLKSLQYAVTTSFGSICYGSLFTAAIRTL RWEIRGIRSKIGNNECLLCCVDFLFHIVETLVRFFNKYAYVQIAINGQSFNRSARDAW ELFQSTGVEALVAYDCSGAVLLMSTILGGLITGTCTGVWTYFKQSDKAIMVGSTSMLM GMILVGVTVVVVESAVTSIYICYAEDPRLIQRWDPDFFDQMSEALHQRLQYRSARAHQ ILNSRLDQLPNTSSI</aaseq>

Gene Sequence

<dnaseqindica>3926..4135#3527..3760#3089..3205#2743..2967#2467..2650#159..760#gcagttactcctcctccccatcctcttcttctcctccaagtcatcccctccgcttccggcctcctccccgcgatccgctcgcggctgatccctcgctccggtgcggtgcggtgcggtccccgctgctgctgatctccggcggggcggggcggggagcgatgtcgtcgtcggagggggagagcgcgaaccctagcccctgccccgcggggcctgcggcggcggcggcggtggctggggcggcgggggtgggggtgggggcggcggcgtggccgaggcggcggtgccgggacgtgttctggctggtggtgttcctgctccacctgctcgtcttcggcggggcgctcgcgctgacggggctcaaccgcttcggccaggcggaccgcttcaacatcgaccgcttcaccaacctcaccgccgcgcctcgcttcgccgggtcgccggagcccgctcgggaggcgcccccgccgccgtcgctcgaggccgaggaggtcacccccaagtccgagctcacggagtcgtactggccctactacggcgccgcgggggccgtggggaccgccctcgcgtgggcgtggctggcggcggccgcggggaagaaggacggggggagggtggtcatgagggccgccgtgcacagcctcaccgcctacctcgcggtggtcagcgtgctctgcttctgggggaagcacttcttctggggcgtggcgttcgccgtcggcggagcgctgcacttcctctacgtcatgtcagttcttgataggtaataataatgcacagcaactgccctttttgtcttctcaaatgtcctgcacaaaattagaaatcgtatgcaattcgaggcaaacttagacttgagtaggtgagggttcatacttcatatgatgctgacaccgacagaagctaaattcctgccactggagaaatcgatgaattgcgcagctctcttttataagaattttactaggctgttggcgcgtgtccatgtcggttcccattaccaacaggtgcacccatatgtatgggtgtgcaatgctagtgctttgtttcttcacactcttttagagttaacttgatttggatggtagcacacggtttaagcatgggctagtgttgcttttaggctttagtgcctacaaatgctgtaaagatgtacaagaaactacaatgtcagggatcatgccattcttttggtgcgtgcgtacatagtagtccctccattcttgatattgtttgaactaaccaacgtcaaataaaaaagcagagggagtaagatttaagcaggtgttgcagattgtctctgctattctgtgtacccagtaggattgtacatgtttgaattgttggagttaattgttattgatgtacatttgtttacaaattctgtacatttcccagtaggattgtacatgaggacaagatgctattgatttctgttttatccatgtagtgcgctctacaccatgatggaaatgaaacttaccaatggacaatgaatatctaaataacttctgaacattgaaatgtgataaatggaatgggttttccacaatccttttttgtacatttcaagctttgtaaacgcgcttgcggcgcagtggtagagactccagtagaggggatgccggcccaggcttgaacccaggttttgcccaaaaaacatcccccctcgcaggcactggtagaagcgtgctccccacgagaagttgagtgtgctcaactgcggtctgggggatttttctcaacttagttgaatgtcacgggctgtcttaaacccactggtcaagcatttttttttaaatacagttcaagcttccttttttggtatttgccagagacatcatacaatgcaatgtgcaaatttagtttgataacctgttttcaaataacgttgtatatatgggaaaataattgcttttgtgagtaaaaccagatctttaggcaaaattacattaatggacagtgtcacttcaacaaaacaactattctatagattactctgcaataatcagcttatgtcccaaaccagtatcaaacagacaaacagtattattactatatttgtaggttgtaaatgttcccactgattattgatattttgtcatccaatatcagccggcatgttatcagtggaaaatttgacagcaactgttttttcttcaactcacagaatttagctaggtttacaaactttgtaggtggtaaaagtttgttgtgaacattaggtgttaacatggatgtcttatggcaacctttttgcatgtcatggctgtctgtggaagaaaactatttaagccctgaaaatatctggtttggtttcataaggaattcttatgctaaaattgttccttccattctatgctaaaatcatgagaaataaccccttctattctcataaacattatatttgctgcaaaaatacataccccgtttatctccaatggcattaattgggttggtttttgctaggttccccttcacaatgcttgtattgcagaaggcagtaagaatggtatgggaacttcctgatgtgatgaggatagcatatgcatttgtgttagtcatgctttgttggatggcattatggtcctttggagtgtctggcattcttgcttttcacatacctaatggagggcaatggtgggctcttttggtgagcgggcaagttttgtttattctatatcgaatttcaacgtctttcctattctttatatattttctgattgtttcacttgtaatctgtagattttctcagtcagtttattttggactggagctgtccttagtaacacagtccatgtcatagtatcagggatggtttttcttgttctcattcatggtggtcaagctgctgcatcgatgcccccaaaaccacttctaaaatcacttcagtacgctgtaacaacttcatttgggagcatttgctatggatcactttttacggctgctattaggactttacgttgggaggtttgtacctttaccttaacagagtttcgccgcatgaaattttcagattaccatgttttattgtcattctctcaataaaatattaattttcccttttcttatttttttaactaattttcagattcgaggaattcgttctaaaataggcaacaatgagtgtttgctgtgctgtgttgactttttgtttcatatcgtggaaactcttgttcgcttcttcaacaaatatgcatatgtacaggtcagtgacagatgttttatctttgtggaagttttgataatctcatgccaatgccaaaactgtccctgttcgatgtgtttgccactttatcatttatgttctgaactgatagaactttaaatgtttccttaagctattaataagttcaactttactatacaaactgtcaaagtgcacatggatacccgataccttacctggattgatgttacaccaatttgtatgctttgtgaatcaatatcactgtatggatattactatatcaaattactgatatcctattgggcttgcacaaatgtctcacatacttttcactttcagatagctatcaatggccagagtttcaatcgctcagctagggatgcttgggagttgttccaatcaactggcgttgaagcacttgttgcttatgactgttcaggtgctgtccttctgatgagcaccattttaggtgggttaattacaggaacatgtacgggtgtttggacatattttaaacaaagtgataaagctattatggttggctcaacctctatgctgatgggcatgatactggtaagttcttatggtcatgcaaaatctaattgaaatttacaaggaaacaaggatttctcttactggacaaattcaatagaatattgctaggagtcacacagcaggacttctctactatgacccctgttggatcatgttgagttgattgatttttccccctttcaggttggggtaactgttgtagttgtcgaaagtgcagttacatcgatatacatatgctatgctgaggatccccgtttaattcagagatgggatcctgatttttttgatcaaatgtcagaagcactacaccagcgactgcaataccgaagtgcgcgagctcaccaaatactgaacagccggcttgatcagttgccaaatacctcgagtatttgaattgcatgttaaatatttgaccatttttgtcggtccatcgaaagtgctgctgcaatttccagaacaaaaaagttctggaacttcctgcggtctaaatattgatctacggaacctttcagcctctgaaatatagaagaatgaagtgccccagcaatcatggtggccttcaaaacaacacgatgttgccaatcaagcagccatatgttcatagttgggtagaactgcaatgctggcctttctttgatctgtatgtatgcagctttgtagggaaaacagtaaagaaaatcttagtccagttgttgacttaggtcttttgtaactgactgagcctgctgccagcctcgtgaatggaaacatttcttc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0580100, RefSeq:Os02g0580100