Os02g0608900

From RiceWiki
Revision as of 02:40, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0608900| Description = Similar to Epstein-Barr virus (B95-8 isolate) U2-IR2 domain encoding nuclear protein EBNA2, complete cds| Version = N...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0608900

Description

Similar to Epstein-Barr virus (B95-8 isolate) U2-IR2 domain encoding nuclear protein EBNA2, complete cds

Version

NM_001053926.1 GI:115447222 GeneID:4329941

Length

4129 bp

Definition

Oryza sativa Japonica Group Os02g0608900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:24752530..24756658

Sequence Coding Region

24752798..24752929,24753484..24753604,24754422..24754516,24754599..24754769,24755759..24755848
,24756104..24756607

Expression

GEO Profiles:Os02g0608900

Genome Context

<gbrowseImage1> name=NC_008395:24752530..24756658 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:24752530..24756658 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccaccaccaccaccacctcctcctcctcctccaattcccaaaaccctaaccccttcaacctcccgccatggctccgcagcctccgctgccccttcaccttcctctgcccgcccccaccgcccccgccgccccctcctcctccgccgccgccgccgcctcccccgctggaggtggtgtcgccgtccccgcggtggaggcggccggggctgagggtgaccacggagtacgacagcgaggaggccatgttcgcgcacaaggtgtcgtgcaaggtcgcgggcgggctcgccaagctgcggctgtcgttccagagcgacccgtcggggcaggggttgggggaggagggcgacccgcggcggcagctattcgtcgcgcccgtggtcgggctcatcgccaagaatttctccgtgctgtacgacgtcgaggcccgcaacgcgctgctcagcgggcagggctccctccccggcggcgccatccagctccgcggctcacacgatgtcaaggagcgacaaggagaagtctcagtgatcactaggctgggtgatccgtcttataaacttgagctatcatccttggtgccttacaatggtctgccgagagcaaccctccactttcctattggtcaagtgtcagttgaagagaggagaaacgaagcggatgagaaaatgttatccctttatggaattgcaaaatctaatttcttggatggcattcttactgcccagtacagtgaaaacgatattaatctgagatattgttataaggacaatgaactaactttaattcccagcgtgtccctgccttccaatgctgtatccttaggcttcaaaaggcggtttggtccttctgataagttgagctatcgttatgactttaccactgatgactggaatgctgtttataagcgcacagttggtaaagatttcaaagtgaaagctggttatgattctgaggtgcgagttggatgggcttcagtttgggtgggtcaagaagacggcaaggcaaagaccgcaccaatgaagacgaaacttcagctcatgcttcaagttcctcaggacaatttccgcaatcccaccttcctgttccgtgtgaagaaaagatgggatctgtag</cdnaseq>

Protein Sequence

<aaseq>MATTTTTSSSSSNSQNPNPFNLPPWLRSLRCPFTFLCPPPPPPP PPPPPPPPPPPPLEVVSPSPRWRRPGLRVTTEYDSEEAMFAHKVSCKVAGGLAKLRLS FQSDPSGQGLGEEGDPRRQLFVAPVVGLIAKNFSVLYDVEARNALLSGQGSLPGGAIQ LRGSHDVKERQGEVSVITRLGDPSYKLELSSLVPYNGLPRATLHFPIGQVSVEERRNE ADEKMLSLYGIAKSNFLDGILTAQYSENDINLRYCYKDNELTLIPSVSLPSNAVSLGF KRRFGPSDKLSYRYDFTTDDWNAVYKRTVGKDFKVKAGYDSEVRVGWASVWVGQEDGK AKTAPMKTKLQLMLQVPQDNFRNPTFLFRVKKRWDL</aaseq>

Gene Sequence

<dnaseqindica>3730..3861#3055..3175#2143..2237#1890..2060#811..900#52..555#accacaccactccctccgcccctccgcatcgcttcctccgccgccacccccatggccaccaccaccaccacctcctcctcctcctccaattcccaaaaccctaaccccttcaacctcccgccatggctccgcagcctccgctgccccttcaccttcctctgcccgcccccaccgcccccgccgccccctcctcctccgccgccgccgccgcctcccccgctggaggtggtgtcgccgtccccgcggtggaggcggccggggctgagggtgaccacggagtacgacagcgaggaggccatgttcgcgcacaaggtgtcgtgcaaggtcgcgggcgggctcgccaagctgcggctgtcgttccagagcgacccgtcggggcaggggttgggggaggagggcgacccgcggcggcagctattcgtcgcgcccgtggtcgggctcatcgccaagaatttctccgtgctgtacgacgtcgaggcccgcaacgcgctgctcagcgggcagggctccctccccggcggcgccatccagctccgcggctcacacgatgtcaaggtaaatggcacacttcttctttttctggcttgaatccttagtcacccgcatttacccatcaagtgttgttcagctgttccgttgcttatgatatagtatgtgtgcattttgttaatttactaatcgcgagaaaggggttctcaatttttcatttagacagtttctcggtaaaattgatcagcttttcacatgtagctgtggtactggaacctaaatacttctttctttctaatgggactttttgttgactttcaggagcgacaaggagaagtctcagtgatcactaggctgggtgatccgtcttataaacttgagctatcatccttggtgccttacaatggtctggtgagtaccaagtttcatggatttgatctttttggtttgtttgtttgataaaagttctgtcaaggttcagtggtcataatcgtatcagttttgcagtcggtgctataccttacaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataggacactcatatggggcaccatggtatcaaatacacaaaatcactcaaatttttcaaaattttcaaattgtgagtatatacctagttataataactcgattcatacctatacctatcaacaaaacaactcaaatttaactttatttcacaatccatgattacatacctaactaattatatgtatggatgctatatacctagaatcaaaatctaacaaaaacaagttcaaattcagttcaaacttgctttgaactagttagtaaagtagctaatgttaatatctaagtaattgaaaaagtttcatactcatttgaattaggtatatactcaatttcaacaatggtgcccgggcaccatggagcaccaaacaaatttactatatatatatatatatatatatatatatatatatatatatatatatatataattttttatatcgtgatgataatgcactttagccattggttctgaatgggcttacagatcacttttatccctcaggcagaactctatgctataaaaaatgctgactagtcgccccgcttttcaaaagtcatttcatgtttcatattgtaggtattgttgtttaggctcttctatgtatatttctcctgcatccaatggatcatatatcctgaaggttcaattttgagggtttgtagaagaatatgatctttggcaactagaattcatgctaatttagttttttttttttactagcataaggcatataaaccctgttacatgtagaataaaatcctgattgttgtacgcagccgagagcaaccctccactttcctattggtcaagtgtcagttgaagagaggagaaacgaagcggatgagaaaatgttatccctttatggaattgcaaaatctaatttcttggatggcattcttactgcccagtacagtgaaaacgatattaatctgagatattgttataaggtgatttttacaatctttcactttggtttgttttccagactatttgtttaatttgacttcaatcatacgctctctatggcaggacaatgaactaactttaattcccagcgtgtccctgccttccaatgctgtatccttaggcttcaaaaggcggtttggtccttctgataagttgaggtcagcatttgggattgttgccatgcctattgatctattagtcatttgtctctaattgtctctggtttgatatttttagccaccacatattcatgctttgtaggctgcaaatttccacaaatttttcttgacaattatacactcattagtgagaacatcaagaaagtttcagaactgaaaataacagacattggaggtgttttgacctcaatgactacatctgtacggatattttatctcattaaagttgaaaatacttgcactatttagaaatctgacttgttacaattgtgtaccgcatgttgtagcatgatttcgttatgtgatgtcctgcttgagcatggctttcggataaattttatggataaccttgtcatgtcaagattttgcaaccaccaagcatgtttatgagcatatctacaagttcctgtgtgttagcaagatattctgcatgaatgataatggtgttcatgagttttacatacttcaactgcaaagttatctgtctggcatttttttttcttcacaaagcgttgaaggatatggtgattgcttagcatcattggtaaatcaataattgtaaattttcattggctgatcaattgctcaatttcctttatattcgtgttaacattacagtttaatatggttgttgggatgtatcgactgcataaggccaatttaaaatttggaccaggatattttcagttatgcccaaggaggcaaaagggttttgcatcttcatgcataatctttgacatctggtagttagcttctttcccaatgtgtctttttaatgttgggttccccttttcagctatcgttatgactttaccactgatgactggaatgctgtttataagcgcacagttggtaaagatttcaaagtgaaagctggttatgattctgaggtgcgagttggatgggcttcagtttgggtatgtatttacagcctccttgttttgctatatctgcatatcttacattactattggagcaagagaattagagaatacaaaatagggttcttttagtgatctcatcaaaatctcgaagttttttcttgtccagacgaaaggtttaaacacacaaaactttccatttattaaatctgaaaccccgaaaatgcacatataccaaagttctttttttatggccatttgtaccattgttagccatctatgcttgctgtgcgcgcgctagtgttgcagatatatgtttttttaatgatcaataattaatataagcaatgttgtgtaaactgtagactgtatctttatgcctttcatggggggatcctttgacagctgttttgacaatttcttaaactacgacagttttgttgaagtgctggtttttatggctaaaacatgcaaaacctgactttgcatcattagacgatttgtccattgaagctaatattgccttctgatggctcaagtgtactgtacttttatgagcaattcgtgagtttcgttttcttggatgctaggtgggtcaagaagacggcaaggcaaagaccgcaccaatgaagacgaaacttcagctcatgcttcaagttcctcaggacaatttccgcaatcccaccttcctgttccgtgtgaagaaaagatgggatctgtagcatatgctacattatatactccatttgtatggggataccagtattgggtactcgggatttggccaacattttgttgtaagctgcgtaggatggcttgaaaaaaaaaatccatgaagcctttccaattctcatcatgtaattctgcctgctgtacataacggccatcgttcgttccgcacataagcaatttgatttccatgtaagattgttcacccctttactcgaagttctgggctaacttttccggagtgctatcggatcttcactc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0608900, RefSeq:Os02g0608900