Os10g0426800

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Revision as of 08:38, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0426800| Description = TRAF-like domain containing protein| Version = NM_001071181.1 GI:115482105 GeneID:4348676| Length = 1487 bp| Defini...")
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Gene Name

Os10g0426800

Description

TRAF-like domain containing protein

Version

NM_001071181.1 GI:115482105 GeneID:4348676

Length

1487 bp

Definition

Oryza sativa Japonica Group Os10g0426800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:15628778..15630264

Sequence Coding Region

15628778..15629074,15629546..15629607,15629619..15630264

Expression

GEO Profiles:Os10g0426800

Genome Context

<gbrowseImage1> name=NC_008403:15628778..15630264 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:15628778..15630264 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctactgccgtcagccgcggcaccgcctcctccattgtggccgacgcggtgaccgggtaccacctcctcaagatcgacggctactcgcgaaccaagggcactcccaacggtgcagccctcacgtccgaccagttcgtcgtcggcggccaccgttggcgcatcagatactaccccaacggggacatcgccatgttcgccgattacatatcatttcacctcatgctagatgaaaatgccaccagcacgaagggtgtgaaggttaaagcccagtttcagatttgtttcgccgatcagttgatcaaaagggacgaatttgagaagtccgacgatctcagggacgattctttcaccattcgccgtcgtcggcgagatccgcaccgagaggacgacggagatcgccaccgaaaccttcgtcaccgtgcctccgcgtctgacctgaaccagaagctcggcaaacttctggacaccgagaagggtgcggatgtggttttcggggtcggaggcgagacgttcgccgcgcaccggtgcgtgctcgctgcgcagtcgccggtgttcagcgcggagctctttggtccgatgaaggatagcgacagggcaggcgttgtccgcatcgacgacatggaggcgcaggtgttcaaggcgttgctccgcttcatgtacaccgactcattgccggagatggaggaggaggaagacaccatgtgccagcatctgctcgtcgcggcggatcggtacaacctggagaggctcaagctgatctgcgaggacagattgtgcaagcacgtcggcgttggcacggtggtgaacatcctcacgctggctggtcagcaccactgcgacgggctgaagaaggcgtgcttacattttctcggctcaccagcgaacctgagtgctgtcctcgccggcgacggcttcgagcagctgagcaggagctgcccctctcttgtgaatgagctggttgccatgctggcgcctccaatccctccatcgagtcatgcttaa</cdnaseq>

Protein Sequence

<aaseq>MATAVSRGTASSIVADAVTGYHLLKIDGYSRTKGTPNGAALTSD QFVVGGHRWRIRYYPNGDIAMFADYISFHLMLDENATSTKGVKVKAQFQICFADQLIK RDEFEKSDDLRDDSFTIRRRRRDPHREDDGDRHRNLRHRASASDLNQKLGKLLDTEKG ADVVFGVGGETFAAHRCVLAAQSPVFSAELFGPMKDSDRAGVVRIDDMEAQVFKALLR FMYTDSLPEMEEEEDTMCQHLLVAADRYNLERLKLICEDRLCKHVGVGTVVNILTLAG QHHCDGLKKACLHFLGSPANLSAVLAGDGFEQLSRSCPSLVNELVAMLAPPIPPSSHA </aaseq>

Gene Sequence

<dnaseqindica>1..297#769..830#842..1487#atggctactgccgtcagccgcggcaccgcctcctccattgtggccgacgcggtgaccgggtaccacctcctcaagatcgacggctactcgcgaaccaagggcactcccaacggtgcagccctcacgtccgaccagttcgtcgtcggcggccaccgttggcgcatcagatactaccccaacggggacatcgccatgttcgccgattacatatcatttcacctcatgctagatgaaaatgccaccagcacgaagggtgtgaaggttaaagcccagtttcagatttgtttcgccgatcaggtacggagagagattctaatactcaggtggacgtccacccgtttattgcatgtcatctaaatggttatgaaaaattttcaaaaaaattgacaagatagatcaatatgtaacatatcactccgcaaacatgcaagttcaaattcaacttttacaagttataacaaaaataacaaacaaaactcaaattactatatgtatatttacagttaaatttgttatttttgttacaacttgtagaagttgaatttgaacttgcatgtttgtggagtgatatgttacatattgatctatcttgtcaatttttttgaaaatttttcataatcatttagatgacatgcaataaacgggtggacgtccactcgagctgttaaaatagttttggtgacgagtaagaacttttggtgacgagtgctgtcatctagaccagtaagaacttttggtgacgagtgcttgacttggggtcatgtgaagttgatcaaaagggacgaatttgagaagtccgacgatctcagggacgattctttcaccattcggtgcgacatagccgtcgtcggcgagatccgcaccgagaggacgacggagatcgccaccgaaaccttcgtcaccgtgcctccgcgtctgacctgaaccagaagctcggcaaacttctggacaccgagaagggtgcggatgtggttttcggggtcggaggcgagacgttcgccgcgcaccggtgcgtgctcgctgcgcagtcgccggtgttcagcgcggagctctttggtccgatgaaggatagcgacagggcaggcgttgtccgcatcgacgacatggaggcgcaggtgttcaaggcgttgctccgcttcatgtacaccgactcattgccggagatggaggaggaggaagacaccatgtgccagcatctgctcgtcgcggcggatcggtacaacctggagaggctcaagctgatctgcgaggacagattgtgcaagcacgtcggcgttggcacggtggtgaacatcctcacgctggctggtcagcaccactgcgacgggctgaagaaggcgtgcttacattttctcggctcaccagcgaacctgagtgctgtcctcgccggcgacggcttcgagcagctgagcaggagctgcccctctcttgtgaatgagctggttgccatgctggcgcctccaatccctccatcgagtcatgcttaa</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0426800, RefSeq:Os10g0426800