Os02g0616400

From RiceWiki
Revision as of 02:41, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0616400| Description = Stem cell self-renewal protein Piwi domain containing protein| Version = NM_001053970.2 GI:297599597 GeneID:4329986| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0616400

Description

Stem cell self-renewal protein Piwi domain containing protein

Version

NM_001053970.2 GI:297599597 GeneID:4329986

Length

1608 bp

Definition

Oryza sativa Japonica Group Os02g0616400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:25252638..25254245

Sequence Coding Region

25252638..25252654,25252746..25252878,25252956..25253019,25253096..25253158,25253252..25253392
,25253598..25253671,25253814..25253938,25254013..25254154,25254243..25254245

Expression

GEO Profiles:Os02g0616400

Genome Context

<gbrowseImage1> name=NC_008395:25252638..25254245 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:25252638..25254245 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatttcaaagagtggccattggtaccattatggtctattaatgatctgaacatagctgctgcattgaagtctattcacagcactgcaaaagaacaactccagctattaattgtcattcttccggaagaaagaggcaactatggaaaaattaagcgtgtatgtgagaccaagcttggactggtttctcagtgctgcttaccaaagaatgttaaaacagatacaaatataaaatacctcgagaatattgcccttaagataaatgtcaagacataccgacaatcatttttggtgctgatgttagccatcccccaccagggatgtactcgtcatctattgcaggagtggttggatcaatcgactggccagaagtcaccacatatagagctaatctctgcccaacttgaaaggcaggagattataggaggtctatttcattctactcgagatccaaaagggtgccttaaacctgatggcatgatcagggaactgatgatgaacttctaccagaggaataggcgtaagcctgaaaggataatcttttacagagatggaataagcgaaagtcaattcagccaggttatcattcatgaagtagatgccatcaggaaggcatgcctctctctacaagaggattatctgccaccaatcacattagtgattgtccagaaaaggcatcacaccaggattttccctcacacactttgcagtaattatactgaacaagttgcacagattccctctgaaactcagtggttctaa</cdnaseq>

Protein Sequence

<aaseq>MDFKEWPLVPLWSINDLNIAAALKSIHSTAKEQLQLLIVILPEE RGNYGKIKRVCETKLGLVSQCCLPKNVKTDTNIKYLENIALKINVKTYRQSFLVLMLA IPHQGCTRHLLQEWLDQSTGQKSPHIELISAQLERQEIIGGLFHSTRDPKGCLKPDGM IRELMMNFYQRNRRKPERIIFYRDGISESQFSQVIIHEVDAIRKACLSLQEDYLPPIT LVIVQKRHHTRIFPHTLCSNYTEQVAQIPSETQWF</aaseq>

Gene Sequence

<dnaseqindica>1592..1608#1368..1500#1227..1290#1088..1150#854..994#575..648#308..432#92..233#1..3#atggtatgctatttcctgcattgatttataatccaagttattcaaattgttgcatattgcattaacaatcactttattttgtggttgcaaggatttcaaagagtggccattggtaccattatggtctattaatgatctgaacatagctgctgcattgaagtctattcacagcactgcaaaagaacaactccagctattaattgtcattcttccggaagaaagaggcaactatggtatgaaattattaatgctaaaaaactctgtgctttctgttagctttgaggtgtcattttgcatgtttctataggaaaaattaagcgtgtatgtgagaccaagcttggactggtttctcagtgctgcttaccaaagaatgttaaaacagatacaaatataaaatacctcgagaatattgcccttaagataaatgtcaaggtacatatgtatcgatactttgctacacatttttccatgtattgtactgctggtatttacaacagtatcttgaactaggttggagggcagaatacagttcttcagcaagcgtttgttcataatggaataccgttcgtgtcagacataccgacaatcatttttggtgctgatgttagccatcccccaccagggatgtactcgtcatctattgcaggagtaagattttccctgttgcttagaatttgtttctgttttactactatggcttcttatagggaaataaacattttggctcattatataaagaacttgaaattgaactcaacctctttactccttagtccctccaatttttttttgaaaggattagtccctccaattttgttgtgggtcaatacattactttgtcaaatacttttaggtggttggatcaatcgactggccagaagtcaccacatatagagctaatctctgcccaacttgaaaggcaggagattataggaggtctatttcattctactcgagatccaaaagggtgccttaaacctgatggcatgatcaggtaagtatcttctctatctgcgttttttgacttttctattattaattctcacgtgattgatttggaatctgacatgtgttttgattgctgtagggaactgatgatgaacttctaccagaggaataggcgtaagcctgaaaggataatcttttacaggtgtgcattgcaaaatagtgatatatttattcattctcttggatgatgtcttttgactggtcattgttgcttctagagatggaataagcgaaagtcaattcagccaggttatcattcatgaagtagatgccatcaggaaggtgatgcttcacatttatttgtgtaattctggttgtccgctaaatttatttctgattttatctatttccttttcaaggcatgcctctctctacaagaggattatctgccaccaatcacattagtgattgtccagaaaaggcatcacaccaggattttccctcacacactttgcagtaattatactgaacaagttgcacagattccctctggtaagtagtttattactccagattgtcctatttcaagattttgaaatgggtgactttaaatattttcaaacccaacaataaacaatttcagaaactcagtggttctaa</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0616400, RefSeq:Os02g0616400