Os02g0621500

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Revision as of 02:41, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0621500| Description = Zinc finger, RING-type domain containing protein| Version = NM_001053996.1 GI:115447362 GeneID:4330014| Length = 472...")
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Gene Name

Os02g0621500

Description

Zinc finger, RING-type domain containing protein

Version

NM_001053996.1 GI:115447362 GeneID:4330014

Length

4721 bp

Definition

Oryza sativa Japonica Group Os02g0621500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:25586254..25590974

Sequence Coding Region

25586427..25586744,25587315..25587427,25588283..25588483,25588565..25588735,25588822..25588893
,25589713..25589892,25589983..25590011,25590629..25590771

Expression

GEO Profiles:Os02g0621500

Genome Context

<gbrowseImage1> name=NC_008395:25586254..25590974 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:25586254..25590974 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctccgaggacggctgcggcggcggcaacccgccgggggacgcagcggccgcgccgccggtgtggaacgccgcacctgcggcgggagctggctgcggcgatctggaggaggacctccggttccagtgctgcgtctgcctggagcttctgtacaaaccagttgttattgcatgtggacatatgtcatgtttctggtgcgtccacaatgctatgcatatcatcagggagtctcattgtgctgtctgtaggcagccttataaacattttcctagtatctgtcaactcctccatcacttgcttataaagcttgaacctgtggaatacaaaagaagggaaaaagaggtactagaggatgagaagcgtgtggatacatattctccacaaatcattgagtttttaaactccaagagcaacaattgtgaaattgatggggagaatagacctgaagaaagtaatagtcgacctccacaagaagttacatctgatggcaacactatcaatgggcatccgaagaaagttaagctggaggacgtgtcatgtgctctttgtaaggagctgttgtatcaacctgctgttcttaattgtggtcatgtgtactgcatgtcctgtttgtcgtccttggatgatggtgcactcaaatgccaagtttgtggaggtcttcatccaggagattttcctaatgtttgcttggatttggaccattttatcgaagactattttccagcagaatatgacttaagacgagagaagattaagcttttgaagggtgaatgcaatcaaggatcatcttcaggtacttcatgcataaaagaaggcaggggtagaccaacaaataaggaaaaccgtgcacatcaggatgatgacttgtcagatgttcatattggggttggatgcgattcatgcgggatgtatccaatacgagggaagaggtacaaatgtaaggactgcactgaattaattggatttgacctctgcgaagaatgctacaatacaaaatcgaaacttccaggccggtttaatcagcatcatacccctgaccacaggatggaacttgatcattcagcactcttcaataggttgatgaggctacaagggatacacgaggagggcccaggagagataatcatagaaggtgcatttgttgctcctgacgctgtggtgcatataatagcagatgatcatgaggaaatcgaggataacggtgaggatgatcacttgctctag</cdnaseq>

Protein Sequence

<aaseq>MASEDGCGGGNPPGDAAAAPPVWNAAPAAGAGCGDLEEDLRFQC CVCLELLYKPVVIACGHMSCFWCVHNAMHIIRESHCAVCRQPYKHFPSICQLLHHLLI KLEPVEYKRREKEVLEDEKRVDTYSPQIIEFLNSKSNNCEIDGENRPEESNSRPPQEV TSDGNTINGHPKKVKLEDVSCALCKELLYQPAVLNCGHVYCMSCLSSLDDGALKCQVC GGLHPGDFPNVCLDLDHFIEDYFPAEYDLRREKIKLLKGECNQGSSSGTSCIKEGRGR PTNKENRAHQDDDLSDVHIGVGCDSCGMYPIRGKRYKCKDCTELIGFDLCEECYNTKS KLPGRFNQHHTPDHRMELDHSALFNRLMRLQGIHEEGPGEIIIEGAFVAPDAVVHIIA DDHEEIEDNGEDDHLL</aaseq>

Gene Sequence

<dnaseqindica>4231..4548#3548..3660#2492..2692#2240..2410#2082..2153#1083..1262#964..992#204..346#atcggccccgtactcccccgtcccgttccttcgttccgattcggtccttcgcctccaaggctccaagccacccgcgacctcgagcttcccttctctctctctctctctctctttctctctcgcggcctcgcgtccgcctgcctcctcgcgacaccgcccgttccgttcgagggggggcgaagccgggtgggagggggaagaggatggcctccgaggacggctgcggcggcggcaacccgccgggggacgcagcggccgcgccgccggtgtggaacgccgcacctgcggcgggagctggctgcggcgatctggaggaggacctccggttccagtgctgcgtctgcctgtgagttacgccgcgtcttctctctgttttttttttctccgcccatgttgtagtgacctttgccggcgtatgagcagacgatcccctttcgttgattggacgttcgtgctgcgtgattacgcgccctcgcttttgatccagtgcaattcgccgcttattttcgtcgttgatattttcttttttgcatcgattttatgctctatacattgcgccgtccctaaatttttgcgtagtgatattaagcttagatattgttaatgtaagatctccatctaggaataccggtgacgaattgtagccataatttgctctaggtgacgggaaaagcaattgttgagctcgacatcttgcaacatttaggggaacatctaaataggtttagatcatgctctagacctttgatggcggagggcctgcaacagtctgttttgttgccatttgtctaaactgcgttttacattggccttctcttgtaaatgctgaaaaggcacattgtcttgctgtagtttttttttactttgactggttttgaatctctggtcattgtgttaattcgcaaatgatggcatttaaagaaagcacagatatcttatgtagttgttcaatctttcttgcagggagcttctgtacaaaccagttgttattggtaagagtttgctgttcatgctaacataaagagcaacctgattgcatagtatatattttttgaaatctcatttatcaattactggtgcagcatgtggacatatgtcatgtttctggtgcgtccacaatgctatgcatatcatcagggagtctcattgtgctgtctgtaggcagccttataaacattttcctagtatctgtcaactcctccatcacttgcttataaagcttgaacctgtggaatacaaaagaagggaaaaagaggtactaggtaagtatccaaaatccaaaccattaaacctctttcataatataaacaatactgttcatagtaaatgtttgtatttcttgcgaagtatggatactgcatgtattgtgttttgcatatgaatacaccgtcaatttcgatgctcttgcagatctagttcaattttttgggggtcatgtttggattgttatagaagcatttatatttcaaaattattttgcgactgccatctaaagtgctagaacacaaccagttctactgagcaataatgcaatttcataatttgaattcaaattcatcaaatccaaattgattggggtcatcagggcagaagggaatgtgatggtgtattcatgtagagggtgaggttgttatggcatcgatggtataggttcctagttggctgtgcaaacatggatgtcagaggatgttgctggcaatatggggatagggatttgtaagttttgggtgagatcattggatgaggaggatattggtgaatacattgccttagagtttgtgtttaatggatattgaaagtgtagaaaaagttcacaatcttatgctgaacaacacagagttttttcgctttgcagttaccatgacagttcttaaatttcacaattcacactatatggatgagtccatccagttttacgttttggcttattttttgtagcaccagagtttcaagaattacagcacgcttaacaaaccaaacatggtttcctcttccaatagctgtttgcctgatttcagtaattagcacgtcctatttttctgcaagttcttactgatgctcttcttttggtttcgactcagaggatgagaagcgtgtggatacatattctccacaaatcattgagtttttaaactccaagagcaacaattgtggtaagaattgtgccatacaactgcaatgatatttgtctcagctctcaagtttgcctgaacttataagatgtgctaccttctgcaagaaattgatggggagaatagacctgaagaaagtaatagtcgacctccacaagaagttacatctgatggcaacactatcaatgggcatccgaagaaagttaagctggaggacgtgtcatgtgctctttgtaaggagctgttgtatcaacctgctgttcttaattgtggtcatggtaagatttaaagctagaataaaaaatgttacgtattgcgctaattgtctcacatactgacttacctttatttatgaaaagtgtactgcatgtcctgtttgtcgtccttggatgatggtgcactcaaatgccaagtttgtggaggtcttcatccaggagattttcctaatgtttgcttggatttggaccattttatcgaagactattttccagcagaatatgacttaagacgagagaagattaagcttttgaagggtgaatgcaatcaaggatcatcttcaggtaagcttatctcacatggtgtattttcttatataccatactgatacagcatattaaaattaaggaaaagatcctattatttttttagaagtaattttctaaccatagggcgatgttgcttatgtgaagtatttctagtatatggtgtagcattatcttctgcatgaagagattggcgtttagaacaagattcagtcaaacttttgaaactttccccatcaataacttttaaaatgcttagcttattttttttaaaagttatgtgaagatttaccctgaaaatcactatgataatatcatcaacttattagaatttataaatttatttccaatataaaattgtgaaagctgtactttgaggactgtaaaaaagtcaaaagtcatgtatgctttgaccgaagggagttactatcttactggtaacaatgagtattatatatttatatgccaatagccactatgatttatcctatgatgtgaaatgcgtagatgaatattagcaatagtttgtagaaattaaccacaagattttatactaccccagttacaggtcagtaggccacaaccagtgatacagcactggaagagtgagaggaaccagcttgctgctttctgggacagtcataggaagttggtttcgatctactataattctctacgatactgggctagttctttcaattgtctgaaaagatagcatggataatttgcctttcctgttttgctattggttatggaaagtttgggcacgagttatgaaagtgatatctttgtaaatacgtataactttcgaaaggaataccataactgatttcttctttcatggctaactgtttttttttgtggtgtggttaggtacttcatgcataaaagaaggcaggggtagaccaacaaataaggaaaaccgtgcacatcaggatgatgacttgtcagatgttcatattggggttggatgcgattcatgcggggtatgcacaagttgtgaactttttaagatttggtgaacatacatccaatggataaactgttctagtcgcctagtaatatccaccatgcagcccaaatagtgatttttggttactggtagtactttgggttcactcagtgccagaaaaaaaatgatttcgtctcttaaattattcacactaagttgttgcaatctccatattctatcttgtgatcactttgatgggaacacattttcaaattttatttaagttattagtacttaattcaagtgtagatttgtgttggaaaattagaaatttgtttgcaagacgaggtttacataagttatgtgtccagttgtttagtgttctctagcctttctggttttaaaccttctaatgtactcccaccgtcccttaatataagggaatttggagagatgtgacatccgtccaaaatctcttatattttgggacggagggaatattgttttacacaaaaaggaagccttaaatattttataaggtacatttgtatcatgcctttattctcacttctctgctaatatgaaattgacgaatgcattgcagatgtatccaatacgagggaagaggtacaaatgtaaggactgcactgaattaattggatttgacctctgcgaagaatgctacaatacaaaatcgaaacttccaggccggtttaatcagcatcatacccctgaccacaggatggaacttgatcattcagcactcttcaataggttgatgaggctacaagggatacacgaggagggcccaggagagataatcatagaaggtgcatttgttgctcctgacgctgtggtgcatataatagcagatgatcatgaggaaatcgaggataacggtgaggatgatcacttgctctagaaacgaatcagtggtattaaacctgaatttcggcattgtcctttctttaatgtggaggaggctacatgaatcatgaatggtactgtatgaaatggagggattgaacaaagcttgtaggcgtgtaacgcccatagccccttacttcaatctaatgggaaacatcttatttctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0621500, RefSeq:Os02g0621500