Os02g0625000

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Revision as of 02:42, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0625000| Description = Similar to Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme)| Version = NM_...")
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Gene Name

Os02g0625000

Description

Similar to Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme)

Version

NM_001186153.1 GI:297721438 GeneID:9270575

Length

5700 bp

Definition

Oryza sativa Japonica Group Os02g0625000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:25802738..25808437

Sequence Coding Region

25805529..25805601,25805679..25805959,25807201..25807842,25808073..25808081

Expression

GEO Profiles:Os02g0625000

Genome Context

<gbrowseImage1> name=NC_008395:25802738..25808437 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:25802738..25808437 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagggaacatctgaagctgaggagagcattcacttcttcatgcggtcaattggtcttcgagaatattcacgatgaggagcggttcaagtcctggaggcagggaatgacaggatacccattggtagatgctggcatgagggaactttgggctaccggatggacacataatcggataagagttatcatttcaagttttgctgtgaaatttctacttatcccatggacttggggtatgaagtatttttgggatgtgctattggatgctgatctggaaagtgatattcttggttggcagtacatatctgggagcctgcctgatggccatgagctcagtcgtcttgataatccagaggttcaaggtcaaaagtatgacccagatggtgtatatgtaagaacttggatacctgaactagctagaatgccgacagaatggattcatcatccatgggatgcaccgagctgtattcttgaagttgctggagttgagctggggtttaactatcctaagccaatcgtagaccttcacattgctagggagtgtttagatgattccatctccacgatgtggcaattggatacagctgagaaacttgcagaattagatggtgaggttgtggaggacaacttgagcaatatcaagacttttgacatcccaaaagttgttttgagggaaacatctccatgtgctttgcccattgatcaaagagtgccccatgctagcagcaaggatcataatttaaagtcaaaggtattgaaggcctcaaatagaagttctatttgtgttgatatgatcaggtcctcaaagatggaagcaacgagctctgtagcaaactcaccggtatcaaggaaaagatccttttgtgagactgcatttcatgtcccatcttattcatcttcagctgaagtgcattcgcatattcaagatcatggtggttccttagttgggccttcaagatatctcctgcaggaagcaggtagaaactatgttgatgagccaacatga</cdnaseq>

Protein Sequence

<aaseq>MREHLKLRRAFTSSCGQLVFENIHDEERFKSWRQGMTGYPLVDA GMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYIS GSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVA GVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDI PKVVLRETSPCALPIDQRVPHASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSV ANSPVSRKRSFCETAFHVPSYSSSAEVHSHIQDHGGSLVGPSRYLLQEAGRNYVDEPT </aaseq>

Gene Sequence

<dnaseqindica>2792..2864#2942..3222#4464..5105#5336..5344#atgcgtgcgtgtgcgctgcttcttctctcaagtggtggaggggaagaggagcacaaggagaggcagacggcgataagtcgctcgctcgccaattcgccatgatcgggtggggctccgctaccgtacacgccccggaggaagcccaggccccgcccatgctgctgagctcgtgatcctgcgctcctggccacaggctgcgattcggcgttggtgcgcccaccctcgatcttggccgcttgcgcgcttccacgatctgagtatcctgtcgcgtactggggtcttaattaatttactagtgaccgtgctcatcttcttcttcttcctcctccttgcaggggtttctggtccgaggcggccatcaagatccgtgcttcttgtcctttggcccgggcggagtggtttctttcttgcacgggacgtgctcgacggaatgcctgtgaggggaattcgctcgctgtgagttgggaggggtggtagctgtgcttgcctgcttggtctggtcatggtggattgagtgcttgggggtggtgggatttggtccctgggcatggccggttcggagaggaccgtggtttggttcaggagggacctcaggatcgacgacaacccggcgttggcctccgcggcgagggacggcgctgtgctccctgtcttcatatggtgccctgcggatgaagggcagttctatcccggccggtgctccaggtggtggctcaagcagtcgctcccccacctcagccagtcactggagtcgctcgggtgcccgctcgtgctgatccgagccgagagtacccttgaggctcttctgcggtgcattgattctgtcggcgccaccagattggtttataatcatctgtatggtatggctactttctcatggcgtttcctgcatcaatggagtttcttatatgttgtgttattctatttctttgtgaaaatatttttttttctttacactttggatgcgaagaaatctgaccatgacgactttgaaagtcttagccagctacatcatgtacttttatgttgtcaaaaggctcaacttaataagttatgtaacatttgatcaaaagctattccgagtgaagccttgtaaacaacatcatagatcttttttttttaagaaaatggattaaaatcatagatcatgccagttgcttacatgctgttctaaatgtaaatacagtagaaagttctctcaatttatccatggttatgtatcataagtcagttcatttagttggtattgacatgatatgtgctacaaacatcactaatacacattttccccacaaatataaaaaatattcaaattcatatataggaagaaggaaactatctctaaacaattaaaattgcattatatgtagtaatctggcagtagtttttcctatcaaaaattcataacaatagctttcgaaaagaataaggcaaaaagcatatgcgcatgaaaatagaaactaggccaagtatgattaacataaatacttcctccgtttcatattataagactttctagcattgcccacattcatatatatgttaataaatctagatatatatgtgtgcctagattcattaatatctatatgaatgtgggcaatgttagaaaatcttataacctgaaacggaggtagtactacataataaagtgccaaataaatctttaggggctaacttgaaccaactatagcttatggtcttatttgtcatagttccactcttcaaatatcaaataccaaatactataaactgtcacatcagaggggaaaatcaaactcaaaggtttgacattgcaaaatgagacggccttttccatttgagctagtacaatattgatatgaaataaacaactttgggttttctagttcagacttcagaaacgtgtacctctaaagttggtacggagtacagctgtgttctctattgttccattccactagcagttttgttttaaaattactcttttcagatatgctggtttaatcttatttgttctcactcttctaaattttagaccctgtttctcttgtgcgtgatgacaaaataaaaaaagagctttcggcactgggaatttccatccagagttttaatggtgatctgctgtatgagccatgggaaatttatgatgatagtggacttgcatttacaacctttaacatgtactgggagaagtgcatggaattacctattgacgcatcaccgtcacttgcaccttggaaattggtgcctgtcccaggtagatcgtggctagtggcctaccattatttatcttttttatttttgaagattttctatgtttttaatttgtctgtacttacagaattatctctagattaagttgtttaccttttttcgagaagttatttacttgcaagcattactcgttttatatttacagatttagtaattgatgcccttcaacctttacactcaatgagtcaatgtctagtttgtcaagatacagctactttaatgcttaacaatttttcagtttgacattcaggtttggagagtgttcgtagctgttctgttgatgacctaggacttgaatcaagcaaggatgaggaatcaagtaatgctttgctaatgagggcctggtctcctggttggcgcaatgcagaaaagatgcttgaagaatttgtctcccatggtctcctagaatactcaaaacatggaatgaaggttgagggagctactacatcattgctatcaccatatcttcattttggtgaggtgagtgtaagaaaagtatatcaacttgtaaggatgcaacaaatcaagtgggaaaatgagggaacatctgaagctgaggagagcattcacttcttcatgcggtcaattggtcttcgagaatattcacggtacttgtgttttaacttcccattcacacatgaaaagtcattgctggggaacttgaaacactacccttggaaagtagatgaggagcggttcaagtcctggaggcagggaatgacaggatacccattggtagatgctggcatgagggaactttgggctaccggatggacacataatcggataagagttatcatttcaagttttgctgtgaaatttctacttatcccatggacttggggtatgaagtatttttgggatgtgctattggatgctgatctggaaagtgatattcttggttggcagtacatatctgggagcctgcctgatggccatgagctcagtcgtcttgataatccagaggtatgcagtcactaaagcacaaaatcctttttttttttttttttttgctatcaggtaagcttgattaaggcatgcttggtctttaccacattttcgatggcccttgtgcaaaaatgtcgcttgacacagtatttatggtaatcaagtcacccaccacacttgggacatgaaccaaactagccatactttatcgaatttgcttacattgatgtggcaaactgtggcattaaactaaatacaggaatttaggaatttctcttcattagaaagttcatatatgatgagactagaatagatttttatatccatgaaattctccacagatcatccacatttcactattcagttaaaaggtgttgaagagaaacagctcaaggaaaacgttagttaaaagaattctgactgtagtgtagttactaacctaggcaaacttttcctggcttggctgaggcataaaactgagctaggatttgcacccttggagtgggaagcaaatgatttttaggtatgccaccttactatttgtttttctataaaatgccatgtgcacgtttgtcatactctcactgagtggcattctagaactttactttatcacaaatggagtgacactcaatcaagtaattctacataaagagcaagctgaattttgttttttccctctaaaagacagtggctgccaggccaagcttgcgaacctaattgtgtactgacgagatcatagcccagcggcctcagccaacttgaaaaataacttggcatggccagcatatgttgccttattttttttccctttaacaagggtcgatatgatgaaacttaaattggcacagatagtatattttggttattgtagtttggttttcattgttcttgtagattatggaaaatgtgattgctacgtattatgccttgtgcatatggtattaatatatgtgattttactgtttctgccatccaccctacaattttcccttgtcacttgtataatgtattgtctataatcaaaattttacgatatatggtttaccttggcacttcctacagatgcattgacaaaactttgtggccttcctttctgcttagttttcaacttgtgattttttgaagtttcactgtactattaggcagaagagctcccttgtgttatacttattttatgtgtctaagtaccaagtgttttatccatgacatgcaagatatttatgtttccctatttggcttttttgatgcaaaactaggttcaaggtcaaaagtatgacccagatggtgtatatgtaagaacttggatacctgaactagctagaatgccgacagaatggattcatcatccatgggatgcaccgagctgtattcttgaagttgctggagttgagctggggtttaactatcctaagccaatcgtagaccttcacattgctagggagtgtttagatgattccatctccacgatgtggcaattggatacagctgagaaacttgcagaattagatggtgaggttgtggaggacaacttgagcaatatcaagacttttgacatcccaaaagttgttttgagggaaacatctccatgtgctttgcccattgatcaaagagtgccccatgctagcagcaaggatcataatttaaagtcaaaggtattgaaggcctcaaatagaagttctatttgtgttgatatgatcaggtcctcaaagatggaagcaacgagctctgtagcaaactcaccggtatcaaggaaaagatccttttgtgagactgcatttcatgtcccatcttattcatcttcagctgaagtgcattcgcatattcaagatcatggtggttccttagttgggccttcaagatatctcctgcaggaagcaggtagaaactatgttgatgaggtaagcttaatcatcatatttgatagacaagtgctgaaaaatttaatgcgatattttcatctttgtagttttttttatcaggaaagcaaacatcccatgaaattaccaccacaagacctataaacataataacattcaacctccaaagtactaggtttaaagtttaaacagcttcgaacactccatgatatagatggtattctgaagttgtgtcttctgcttctttacagccaacatgaactgtgtggagcgcctgtatcgtgatcttagctaatcttaattctgacaacagcttctgctataatgacaaactcatgatatattattgctgcaagctgaccagcttctgtcggcataaatggctttattggataatctaggtgctcaggatgggtagtggaaacccacccatttcacacttccactgcttctagaactaagtctaacaagtcttgataggattagtaaaactgtgcaagtctttgtagtcaaatttcacggcatgtatatttcagtagatattgctggaggtaaagcctccatcgagaaacaagatagcacccaacctatgtttaactatgatactttttctggc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0625000, RefSeq:Os02g0625000