Os02g0644000

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Revision as of 02:43, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0644000| Description = Similar to C13 endopeptidase NP1 (Fragment)| Version = NM_001054097.1 GI:115447564 GeneID:4330133| Length = 10474 bp...")
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Gene Name

Os02g0644000

Description

Similar to C13 endopeptidase NP1 (Fragment)

Version

NM_001054097.1 GI:115447564 GeneID:4330133

Length

10474 bp

Definition

Oryza sativa Japonica Group Os02g0644000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:26777306..26787779

Sequence Coding Region

26777494..26777676,26777822..26778028,26778498..26778704,26778779..26778827,26779373..26779572
,26779643..26779728,26779809..26779965,26780176..26780340,26787449..26787535

Expression

GEO Profiles:Os02g0644000

Genome Context

<gbrowseImage1> name=NC_008395:26777306..26787779 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:26777306..26787779 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ttagtcatcctgttgtccataatcgttcagatcgtcggggaaggcctcgtcgctcgtcccactcctctatgtcgcaccccgatctgggctgatgtatgccatgcataccagatattacggaagggagggctaaaggaggagaacattgtcgtgtttatgtatgacgacattgccaataatatacttaacccgagaccaggggttattgtcaatcatccacagggtgaagatgtttatgcaggagttccgaaggattacactggagacgaagtcactgcaaaaaacttttacgcggttctcttgggcaataaaactgcagttactgggggtagtaggaaggtcatagatagcaaaccaaatgaccacatatttatcttctactctgatcatgggggtcctggagttcttggtatgcccaatctgccatatctttatgctgctgacttcatgaaggtgttacaagaaaaacatgcctccaatacttacgctaaaatggttatatatgtagaagcgtgtgaaagtggcagtattttcgaaggtttgatgccagaggaccttaatatttatgtcacaacagcgtctaatgcagaagagagtagttgggggacgtactgcccaggaatggaaccatcgcctccttccgagtacatcacctgcttaggtgacctatacagcgtttcttggatggaagacagtgagactcacaatctgaaggaggaatcaattaagaagcagtacgaagtggttaagaagcgtacctctgacatgaacagctacggtgctggctctcatgttatggagtacggggacaggacattcaaggatgacaagctttacctataccaaggtttcgaccctgcaaatgccgaagttaagaacaagctatcatgggaaggcccaaaggctgcagtcaaccaaagagatgcagatcttcttttcctctggagaaggtatgagctgttacatgacaagtccgaagagaagctgaaagctctgagggagatcagtgacactgttatgcataggaagcttcttgacagcagtgttgatcttgtcggaaaacttctctttggatttggaaatgggccttctgtgcttcaagctgttagaccttctggtcagccactcgttgatgattgggattgtttgaagagaatggtacggatctttgagtcgcattgcggaccgctcactcagtacggtatgaagcacatgagggcgtttgctaatatttgcaacaacggtatctctggcgcttcaatgaaggaagcaagcatcgctacttgcagcagtcacaactcgggtagatggagctcgctggtgcaggggtacagtgcttga</cdnaseq>

Protein Sequence

<aaseq>LVILLSIIVQIVGEGLVARPTPLCRTPIWADVCHAYQILRKGGL KEENIVVFMYDDIANNILNPRPGVIVNHPQGEDVYAGVPKDYTGDEVTAKNFYAVLLG NKTAVTGGSRKVIDSKPNDHIFIFYSDHGGPGVLGMPNLPYLYAADFMKVLQEKHASN TYAKMVIYVEACESGSIFEGLMPEDLNIYVTTASNAEESSWGTYCPGMEPSPPSEYIT CLGDLYSVSWMEDSETHNLKEESIKKQYEVVKKRTSDMNSYGAGSHVMEYGDRTFKDD KLYLYQGFDPANAEVKNKLSWEGPKAAVNQRDADLLFLWRRYELLHDKSEEKLKALRE ISDTVMHRKLLDSSVDLVGKLLFGFGNGPSVLQAVRPSGQPLVDDWDCLKRMVRIFES HCGPLTQYGMKHMRAFANICNNGISGASMKEASIATCSSHNSGRWSSLVQGYSA</aaseq>

Gene Sequence

<dnaseqindica>10104..10286#9752..9958#9076..9282#8953..9001#8208..8407#8052..8137#7815..7971#7440..7604#245..331#actgttgcccatctccttcttatcgctgttcctccctaccgccgccacttccgccctcaaccgccaccaccgtcgcatgagatccaccttctctctccccctcgtggaccttcctacccccgctgattcaccgccaatgcgtcaccgcctcctacgccggtcacgatctccatcatcgtaacgcacaatctaaaaagatacaaactccatccctcccccccccccccacccccctaaaccctaattagtcatcctgttgtccataatcgttcagatcgtcggggaaggcctcgtcgctcgtcccactcctctatgtcgcaccccgatctgggtaggacaatgagctgatgcttaattcatgcccattggcactggtcatgttgttcagaaaatcttctgtatcctttttatgtcatggagttcatatatttctatacttggtctcagaatgcactgaaacgtttctcttttttcgtttaactatattagaaagcccatattgtttattcaataatggtattagttgcatattgtgtcttcaaaatttgaagaactaaggggttaacagcctaaaatgctttgcatgaagacctttagaccttaagctcaaagttgtcttctttgtctagggacactcaatgacgaggttagagaactcgtcaataatatttcttggatttaggtgttacagccgattgagtgtacactcaatgattattcaatatcatttcattctgtgatttttcaacgggcaccctattagtgctcctagaagtaaaaacctgcagtccaatatgaagaaatgcctttaaactgaatttcttcctcaaagattggcacataacgaggatagtcctcaagatcctttcaagaagtctagaattgtggtggctagagattcaaaacgcagatcatgttcggcaatcacaaatgaaacctgaaaaattaaggaatggccagacccatgaccaaaaccgataaaaaattgaacgctcgaatatatgcactttactagacccagtaaataaaagcaatcgactatttctgcacctcttatggctctattttcattcggtagggaaaatgtttaggactaacaaatagagacatacgtttgcacgtgcagctgtagcacggatgccataaccactaataatccagtgacacgctgcactcacataatccaattgagaatgaagattagccccaaactgtgtaaatcttaagtccacaaagactgagcatggaaaaaaagtaaggagcaatgaacatagacacgaacagcgcttcttgctttggtcgactatctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgcaaaacattttcgatatcattaagattatggacagacaggtatttgtgatactttatgaactgacatctaaatttcagctaagaacaaatattctgtgttacctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctacacaaaaaaaaaaggaccagttaatacagttgtacagtatttaacttttaaagcaacaaggggcatgaaaagtgcaacaggcttacctgtcgttcctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacctgcaaacatgtgcaatagttcagagttggtttatgcaaacaaaaaggtgagtgcgcttggattctattggggaaacaaggaggtgagacggattcatgcgatgccctaactcattaggagcaaagaggatacaatcataagaataactatcactagtgatttgtgctatgacgcttctgtaccttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggctcccaacttggtgtagcatgcagccctattgctgtacacctgtagataattgaaaccccaagcagttatgttaagggatgcatgcaaacaggtgataaataaaaatgacagtaatttaggataatgatgatatagagcaatccaaaacagtaatacacaaaagacgtttttgttatgcatacatacagatagattagatggtgcgtaatatatagttgaaactcacacatacacacatgacaaacaatgatccaagtcaaacttcaaaacacaagaaaatgaagaaaccgagtacattatttatatttccaaagttcgaacaagcaagttcaagcaatagggccaaaagaaattaccttcgggtccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaagctgattacctacaaaccataaggattagctagccagtcaacctacaaatggcacattgcaactctaaaaaatatggcagcaagggaaatctctgcaagggacaggtgaggacataaataaagcaggggggagaactagagatgacagcatgataccctactggatcccatacctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactctttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagttagagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttggctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagttcccttcccctctccacagccttatcacagtccttaatgcattcatcgtactggagtttgcaagtgatattagaacaaattagaagaaaacaaccatgttgtttacaagaatccgcatgttacataacttgcatagaggcataatgtcatactcattaaagaaaacatggaactaccattgaaggtgactatctagcaacaaaattttcgattatgacctatggaacaatttgcacaataattcctatctgcgtgaacttttattggtgaaatccattaagctctttttgagcaaagacgaaattcaggtttcagatgaactattcaagttcacctttaacaagtagattgaatcaagcttttggtgaagaggttctcaggagagggacaaaacaatagcggtggttccccaggatataatgttcaaatcgttaggtacagtaatatggtcaatggtcatagtagacataacgcagattgctactaacttgcatcacaaaaaaaaaagtatataagcttgcaactactacgtactccctctgtttcataatgtaagactttctagcattgttcacattcatataaatgttaatgaatctagacacatatatatttagattcattaatacctatatgaatgtgggcaatgctagaatgacttacattatgaaacggaggaagtataacagagctaccagtagaactaggatcaacataaataaatttcaaaagtcgctaaatctaaataaatagaccaaaacgaatgcatttacagcttaaggctgattgaatgctttatctaaagttcgcatagggatcatatcaatcaggtttgtatgtagcgtttatgactttcttctctcttaatcttgagctttccattaattctgaatcccatgtgttttgtgtgattgtaagaccacctatggaattactcctcagagatctaactagatgttgtggaaagatcctcaagtagttaacttgcaagtcagtaagaactgcagataaatcaactaacaaaagcacaagcaatataaatatacaaaattcaatcttcttttgacactaaacaggacatttgatgtgtttgcatcacttggttaacataaatatttaatttacttggcatctgttgtaggctttatcaactgccctaatgtggtgtcatgactgctagtcacttatatatatagaacccgaccatccttacactagttcagaaaactaacagttaagcaaaacaataaacaggtaatcctcacaataactagccaatatgcatttaagggtcaacacctaatctcttgcaagtccaaacaaatgaacaactatcaatccccacaggcccatactacagaaagcaaagcaatttatctttagcaatggactaactcaaagagatcataaatcagcaagcagtgcattgaatgttaaagtatcataaacctcacctttcccatctcaatgtagaccgctgcacggttggtaagataggaaatgtcctcatcatcaagttccatggcttttgtgtaatgctggatcgcggtctcgaagtcctttttcttgtaagctgcgttccccgcttccttctccttctgagcagacgatttcctctccttccgctccttctcctcatcggtcacctccatcggctccggctcaggctctggctccacctccctcgccttcgcctcgggctgctcctgcggctgcgacggcggcgacgagctgggctgcgacgattcagaggcctctggtctctggatcttgatgttaagcatgaggccgagcacctgcatcatccggggatcggagaggtacatgttgaggctgctggggttcctctgcacatcccgcagcatctgcatgaagtcgggctgctcgaggtatgcgcgcgtggtcgggtcggaggcgatcttggtccagagctcgggcccctggaacatctggcctatgccgtcaacgccgctgggcggcgggcggcgcggcggggcggcggccgccttcttggcatcggcgaggccggccttaaggccctcgttggtggggtcgagggcgaggcccttctcgtaggcggcgacggcgctcgcggcgtcgccgaggccgaggtgggcggctccgaggcgggagtaccccttagcccagtcgggcttcagctcgacggtcttctcggcgtcggcgagcgcctcggagtagcggtggaccgaggcgagcgcggcggagcggttggagtagaggacgtggttccccggggcgagcgcgatggcgtcagtgaagtgccgcgccgcctcctcgtagcggccggccgagaaggccgcattacccttcgccttcgcctcgtcggccatggcacgcggcggcgatcagatcggcggcgcgggctccggaagcttctggaagggctctggcggcggggccggaggagagggaggaggggaggaaaagtctggggttagatgggggattaaggtctcggagaagatgaagttttataaaatcggcgaccactatgattgttgcggcgtggcgtgggccgtcggatctctctcaagggttctcgaagcttccgcttagtactattaacgcttattacgctttctcctcatggaagcgaactctttagcgtgatgtaactctccgctttgtccgccgtacagtctccaatgtgggctgggctggtttctcatcagttggtccggcccgtgttaacttcgcggcttgacttgttttagttgggctgggccacgcacgccgaggcggcgggcggcggttgccgtggctgcagaagacgacgaagcggcggcggcgccacctgtccacctcacgccccacgcgtccgcgccgcaggctaccctccttgcatggcggcatggcgcggcgcctacttcggtgcttcccttcaaccacctcggtgtcccgtagagtcgtaggcgtggtattgtcgcgcgcggagaagaggggagggatatggcggcgcggtggtgcttcgcgttgctcttggcgctgtcggcggccgcggcgggggccggagccaagcggacgtgggagccggtgattcggatgccgggggaggtggtggaggaggaggtggccaccgtgccgcgcggcagcgagggcaccgaggaggaggagaaggacggcgtcgggacgaggtgggcggtgctcgtcgcgggctcctccggctacggtaactacaggcaccaggtaagcgcacgggtccagtactccagtgtcgtcggcttcgccgtcgcttagttcgtgcgcgtctggagctcgatttggggggcttggatgatgatgcagcgtggaactgctgtgaggctgtgtagctatgggcagccgtttctgaaagtcgttcagatcattcgtaacgagatctttagtattcatgaatttaaagatttatatgttcaatttgtcgtgccatgagtacttcaatgctccaaaattttcggtttttagcttttgaaaacgaaaaggtttgccttcagtactgaaattaaccgagcaattttccgtcaaaaaaaaagaaattaactgagcaataagttaacgatttgggcttgatgagaagtgaactactgaaagcagccccaggatcttttttttgggaatgcgcaaggagcacatcattgtattaagaagaaataaagtttatgtataaggcgggaacaaaagcaaaacaagatggggatgggatacaggagaggatcaagagtactaaagcctaatctccaaaatcatttggcgacccctccctatccgcatggattactacgctaggaatggctgccctagccagccttcaaagatcagcttcgcctgtcatggcccgagcgatgtccacccaagatctgctggtttgattgaaaactctattgtttctctccttccaaattgtccatgctaccaaggttgcgatggtgtcaaacccctgacgatgcgccttgatctatgtacgtttgatcatgtgagtgtgtgcggactgcagagtgctagtagttcaatctcagcatgatttgcacacatcgctatccaagttgtacttagtctttttgtcaggaagttcaacagactgatgcctagactcatttcaaggaagaaaatggcgtgagcagcaatataattctggataagcaaacgaatttgaagttttcaattttttctgggttctaagttctagtaatatccatgtttaagacagattgagaaaaaaaatggcacaacatatgatgagtttaaaatggagggatcaatttaatacgaaagaaatatcagctgaaatatttagtggctaatacttcagtgattaatttttactgaaatatatgtagcagaaagagacaggctcatagcaagtttgtatttatattgtttcgtttcaaatttagaaggaattgagaccaacaaatggtttatttctccaaggactgtttgcttgaggtttgatgtttttttttttttgggtgtgtttgcactttgcaggctgatgtatgccatgcataccagatattacggaagggagggctaaaggaggagaacattgtcgtgtttatgtatgacgacattgccaataatatacttaacccgagaccaggggttattgtcaatcatccacagggtgaagatgtttatgcaggagttccgaaggtattacacgatgccgtactgcctcactgttattcgttcctcgggctggagagaggactgttagggtcttatgtccaattatttacccttttgcacttctttattagcttcaggtggcttcagatttgcgtgtacatggcacaagtgcataacatatatattgacctttttctctaagtttgatgaagataacacactctataattccaggattacactggagacgaagtcactgcaaaaaacttttacgcggttctcttgggcaataaaactgcagttactgggggtagtaggaaggtcatagatagcaaaccaaatgaccacatatttatcttctactctgatcatgggggtcctggagttcttggtatgtgatagttgcatatgctgctttgctctttgagttaaattttgtccatcatgcatgttgacatgtccaattctcaggtatgcccaatctgccatatctttatgctgctgacttcatgaaggtgttacaagaaaaacatgcctccaatacttacgctaaaatggtaagatttttcttggttacttatttgtggaagagcctccttggatggaataagcaatatatttgtgcaggttatatatgtagaagcgtgtgaaagtggcagtattttcgaaggtttgatgccagaggaccttaatatttatgtcacaacagcgtctaatgcagaagagagtagttgggggacgtactgcccaggaatggaaccatcgcctccttccgagtacatcacctgcttaggtgacctatacagcgtttcttggatggaagacaggtagcttcacatatctttagaaatgtaaagaattacatattgcacacaatgccgtttgtggttttttcgtacattcttgtagaactttcggtggcaaatgttttaataatcaaatctgaagataatactataaatggtaaaaactatttaatttattgcatcatgcagatgttatgtggtcatctatagaaggattatttttttttcttttatgttgagagactgacctgtacgcactccttcctcgtgcacgggacacaaggtccaaattcttttccaaagcatgttcatcattgtacatcatttttaaatgataattggagtattaagtgtgtatttatatgcatgggaccagcttaaatgtatgggacaggatattaagtgtgtatttctatgcattgaacatgtgcatatcttgtgttaagtgtgtatttatgtgcattggaaatttccatacatatcagctttaatgttccttatttctatgcagtttgcaaagtatttactctataatatgtaaaatttatctcgatgttaattggcagtgagactcacaatctgaaggaggaatcaattaagaagcagtacgaagtggtaagtcttgatttgctctgtacctttccaattttcattgttaaactcccaggtagtcacagcattgttgacaggttaagaagcgtacctctgacatgaacagctacggtgctggctctcatgttatggagtacggggacaggacattcaaggatgacaagctttacctataccaaggtttcgaccctgcaaatgccgaagttaagaacaagctatcatgggaaggcccaaaggctgcagtcaaccaaagagatgcagatcttcttttcctctggagaagggtatttcctagtctattcttttgcagacttttagtttgttgtttgttatgttccttccaaaaatacttaccagtactagctattatctaatcccctttctatacaaccatatggttggagtgcacttgcatttgttttgatgtcacaaattattccagcctacagagatttttctaaactgaagttcattatgacgtgttgaaattacttggtagtgtacatcagctaaatatctttgtttctagtaaactgtgctgctgtctgctgctcgcaagtttcttttcattggagtattatcttagagagatttttttttataaaagtatctcctgttgccatttggagaacaattgcactagactattagcgaaccaaacttaaatgcagaatctgtgaatgggcaagcatttgtttcagtcatgtgcttccatcctatggttgctaattttatttctttgtttggtttcagtatgagctgttacatgacaagtccgaagagaagctgaaagctctgagggagatcagtgacactgttatgcataggaagcttcttgacagcagtgttgatcttgtcggaaaacttctctttggatttggaaatgggccttctgtgcttcaagctgttagaccttctggtcagccactcgttgatgattgggattgtttgaagagaatggtaaagttggaaacttctttatactcggcttactgagaactgacatctgctattactccactgcgctccaatagttccatattgtcctgaaatctcctagtttccattgtttctgtttgtctgactttaatatgagtttcttcaggtacggatctttgagtcgcattgcggaccgctcactcagtacggtatgaagcacatgagggcgtttgctaatatttgcaacaacggtatctctggcgcttcaatgaaggaagcaagcatcgctacttgcagcagtcacaactcgggtagatggagctcgctggtgcaggggtacagtgcttgatctgccgcaacacgtgatatagcctcaaaacttatgccttgtactcgtacttcctcaaaacaataccttcaggactgcaaataaccgtccaaggatgtaccgctgtatgctactgtacctctatgtgtgcaatatagatgccctgtatatacgagtatatgaatgaatcgtgtgcttttacatgcccg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0644000, RefSeq:Os02g0644000