Os02g0671300

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Revision as of 02:46, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0671300| Description = Helix-loop-helix DNA-binding domain containing protein| Version = NM_001054235.1 GI:115447840 GeneID:4330277| Length...")
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Gene Name

Os02g0671300

Description

Helix-loop-helix DNA-binding domain containing protein

Version

NM_001054235.1 GI:115447840 GeneID:4330277

Length

3006 bp

Definition

Oryza sativa Japonica Group Os02g0671300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:28153063..28156068

Sequence Coding Region

28153149..28153325,28153450..28153494,28154226..28154291,28154411..28154482,28154593..28154718
,28154931..28155585,28155681..28156033

Expression

GEO Profiles:Os02g0671300

Genome Context

<gbrowseImage1> name=NC_008395:28153063..28156068 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:28153063..28156068 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcgtctgcacgccggcgcagtgcaactccagtatttcatgccccagcagggagccaccgccgccgccgccgccgaccaccaccaggccgactcggctaccgcgtgcagcgcctccacttcgccggccgccgccgccgccaccatgtgggagtatcatcaccagctgtcgacgcacgcggccttgcagccctcgtcctcttttccctacagttactggagcccctactccgggtcgacggcgctcgccggctcggccttcgccgccgactcctcctcgtcgtcgaccgacgtcatgcgtctcccggctgccggcgagcacgcccacggacacggctggagccacggcgaactaagcaacagcaccaccggcggcggctacagggagaacttcctcgatctgctcgcgtcgaagaacgtgacgccggaaatgttcgaggaagtccccgcctccgagcactacaatgtcgcacccgcggggacgaccctgacgacgacggcacggtcgttcgatcatcatgctcgctccgacgtctcgccgatcaagtacgagatcgccggctcgccgctgtacttgggtggcactaacaccgtcctccaggtccaggacatgaccatgatgagtagcacgccagcatgctacggcgaacaccaccaccaccaccatcatcagctgacgaaggaaggcagctgcaaccatcagcagcaggagcagcacgagcttgcgattagccccatggcctcatttctgcagcaaataagctccggcagtgctagcgttggcgtgcacaacagtagcctggattattcaggcttaggagatcagcctgacaagatttgctgccaggacggccgggaaatggaggctagtccttttggcatgaggagcttgccggatcttgggtcattcgccggctacacgccggccatcgagtcgacgtcggtgcaaccgtacatgagatgcgccaattcgtctgacagcaatcgacaagaacaggagactgtcccggcaaggagtagtagcagcggcagtggagcggcggcgactgatcgtaagaagaggaagtcagaggaaaggcaggaaagcactgtcaagaagtccaagcaagaggcttccaaagcatcacctcctaagcaaccagtgcctaaagtaaagctaggggagaagatcacagcacttcagcaaatcgtttcgccgtttgggaagacggatacagcatcggtactgtttgaaacgatcaagtatatcaagtttctgcacgaacaagtacagttgctaagtgagccgtacacgaactccagcaggagcaacaagcagggtaacagcgttccatggggagatcaagcagaagcgagcaagggagagacgatggagcatgacctgaggaatagggggctttgcttggtgcctgtctcgtggacgcccgaagtgtaccgggatggcaacgcgatggactactggacgccggcgtaccggggctgcctgtaccggtga</cdnaseq>

Protein Sequence

<aaseq>MRLHAGAVQLQYFMPQQGATAAAAADHHQADSATACSASTSPAA AAATMWEYHHQLSTHAALQPSSSFPYSYWSPYSGSTALAGSAFAADSSSSSTDVMRLP AAGEHAHGHGWSHGELSNSTTGGGYRENFLDLLASKNVTPEMFEEVPASEHYNVAPAG TTLTTTARSFDHHARSDVSPIKYEIAGSPLYLGGTNTVLQVQDMTMMSSTPACYGEHH HHHHHQLTKEGSCNHQQQEQHELAISPMASFLQQISSGSASVGVHNSSLDYSGLGDQP DKICCQDGREMEASPFGMRSLPDLGSFAGYTPAIESTSVQPYMRCANSSDSNRQEQET VPARSSSSGSGAAATDRKKRKSEERQESTVKKSKQEASKASPPKQPVPKVKLGEKITA LQQIVSPFGKTDTASVLFETIKYIKFLHEQVQLLSEPYTNSSRSNKQGNSVPWGDQAE ASKGETMEHDLRNRGLCLVPVSWTPEVYRDGNAMDYWTPAYRGCLYR</aaseq>

Gene Sequence

<dnaseqindica>2744..2920#2575..2619#1778..1843#1587..1658#1351..1476#484..1138#36..388#ctccacattccaatcctcagctccgaacccatgcgatgcgtctgcacgccggcgcagtgcaactccagtatttcatgccccagcagggagccaccgccgccgccgccgccgaccaccaccaggccgactcggctaccgcgtgcagcgcctccacttcgccggccgccgccgccgccaccatgtgggagtatcatcaccagctgtcgacgcacgcggccttgcagccctcgtcctcttttccctacagttactggagcccctactccgggtcgacggcgctcgccggctcggccttcgccgccgactcctcctcgtcgtcgaccgacgtcatgcgtctcccggctgccggcgagcacgcccacggacacggctggagccacggcgaactgtgagtcctctaattaacagctctgtctagctctatatatttcatgctttgtgtaaatgatcgcaattccaacgccggtgaattcctcctttcagaagcaacagcaccaccggcggcggctacagggagaacttcctcgatctgctcgcgtcgaagaacgtgacgccggaaatgttcgaggaagtccccgcctccgagcactacaatgtcgcacccgcggggacgaccctgacgacgacggcacggtcgttcgatcatcatgctcgctccgacgtctcgccgatcaagtacgagatcgccggctcgccgctgtacttgggtggcactaacaccgtcctccaggtccaggacatgaccatgatgagtagcacgccagcatgctacggcgaacaccaccaccaccaccatcatcagctgacgaaggaaggcagctgcaaccatcagcagcaggagcagcacgagcttgcgattagccccatggcctcatttctgcagcaaataagctccggcagtgctagcgttggcgtgcacaacagtagcctggattattcaggcttaggagatcagcctgacaagatttgctgccaggacggccgggaaatggaggctagtccttttggcatgaggagcttgccggatcttgggtcattcgccggctacacgccggccatcgagtcgacgtcggtgcaaccgtacatgagatgcgccaattcgtctgacagcaatcgacaagaacaggagactgtcccggtaagattcacgtgccatttcatacccccaacataaataggccagtgagaataactgaataagtgcaaagtagtcctatacgtagtactaaaacgcctgcttgtagtacgtagtactaaataactgaatatatgcagttttgtatctgcatatgtgcgcgtggattttgaatcatgtttgtggcgttgtgctaattaattatctcgtttcaggcaaggagtagtagcagcggcagtggagcggcggcgactgatcgtaagaagaggaagtcagaggaaaggcaggaaagcactgtcaagaagtccaagcaagaggcttccaaagcatcacctcctaaggtaacaacacatagaagacaaatggagtatttgatattatctctgaaatcgtccgaccatatattcagtatttgaacgaactgatcgttttaatttggaaccaaatgcagcaaccagtgcctaaagtaaagctaggggagaagatcacagcacttcagcaaatcgtttcgccgtttgggaaggtatgtaggttacatatgtctgcaattactacattgatttttcttctgcaaatagtgtgaaactgcaattcttctgtataatctaactcagctccctatgcattgcaccacatgaccagacggatacagcatcggtactgtttgaaacgatcaagtatatcaagtttctgcacgaacaagtacaggtaaaattccgttcctgcaaccatcccgacatgcaaattatgtattagctcctatatttttttttcggggaaataaggaatatattactcatgagaagcttcctcacacaccatatctgagacaaattaagttacaagaattttcaggccagagctccgaaacagactcgcaccaagccttatttactaaaatatggctaatactgttttggctcctatggccctcgatgaatttaatctccctatctcctgatagcaggtccttgacctcacggattaaaaaggttaggtactagctcctatattttgacctagctataaatcttccagaaaagcacatgatttttgtgaccaccgtgacattagtagtaaaacggaagtgtactacaggtgagcagcgtacatacacacacaaatcctcgcgtgtggtatcttcagagatgcaatggatcatttgcagtgactgtttagctggttccatatatgaaaaattgacccggtagtgctccctttcgtcagtgggcttcctagtcacacccaagagcaaagtagagaatgtttctcaacttgtactgcctctcaacagccacgaaaacatgagaaaaggacagtacgtgtatacagcatcagcatgcatgttgcaatcatttcgcaaaacgaccccttttgagctctcaagccgtgctgattatccttcctctcatcttccttttcttatactatgtgtgcagttgctaagtgagccgtacacgaactccagcaggagcaacaagcaggtacatgattgattaagcttcagaatctcttgtagccgacaggctagctaataatcagaaattcagaaccagtactgtgaggctaataatcacaagctgtgtgtggtgaaatgtttgatttcagggtaacagcgttccatggggagatcaagcagaagcgagcaagggagagacgatggagcatgacctgaggaatagggggctttgcttggtgcctgtctcgtggacgcccgaagtgtaccgggatggcaacgcgatggactactggacgccggcgtaccggggctgcctgtaccggtgacatctaactgaaatgcaatttgtttggagagctgaagattctaagacagctaatgagtattcagatagtgagattccagagaaact</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0671300, RefSeq:Os02g0671300