Os02g0686400

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Revision as of 02:47, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0686400| Description = Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS)| Version = NM_001054305.1 GI:11544...")
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Gene Name

Os02g0686400

Description

Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS)

Version

NM_001054305.1 GI:115447980 GeneID:4330354

Length

5068 bp

Definition

Oryza sativa Japonica Group Os02g0686400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:29000492..29005559

Sequence Coding Region

29000716..29001246,29001624..29001734,29001845..29001958,29002445..29002735,29002815..29002925
,29003026..29003079,29003955..29004034,29004117..29004232,29004859..29004973
,29005108..29005234

Expression

GEO Profiles:Os02g0686400

Genome Context

<gbrowseImage1> name=NC_008395:29000492..29005559 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:29000492..29005559 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcggagcctccacccgatgccgccgccgccgccgcctcctccgcgggggatctcgcggccgatctctcctccgccaccatcagcaagaagcagctcaagaaggatgcgaggaaggcggagaaggccgagaaggcgtcgcagcgccagcagcagcagcagccgcaggccgacgccgacgaccccttcgcggccaactacggcgacgtccccgtcgaggagatccagtccaagaccatctccggccgcgtgtggaccgagatcggcggcctcgacgaggccgccgccggccgctccgtcctcatccgcggcgccgcgcaggcgatccggcccgtcagcaagaagatggccttcgttgtgctgcgcgagagcatgagcaccgtccagtgcgtgctcgtcgccagcgccgacgcaggggtcagcacccagatggtgcgcttcgccacctccctcagcaaggaatcaatcgtcgacgtcgagggcgtcgtctccctccccaaggagcccctcaaggccaccacgcagcaggtggagattcaggtgaggaagatctattgcatcaatagggcgatccccacccttccaatcaaccttgaggatgcctcacggagtgaggctgaaattgaaaaggctgaacaagctggagagaagctagttcgtgtgggccaagatactcgcttgaactatagagctattgatctccggacacctgcaaatcaagcaatattcagaattcaatgtcaagttgagaacaaattcagggaatattttctgtcgaaaaattttgttgggattcacagcccaaagctaattgctggatccagcgaaggtggtgcagctgtattcaagctacagtacaatggacagccagcatgtttagcacagtctcctcagttgtataagcagatggctatttgtggtgggtttgaacgtgtatttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatctgtgtgagtttgttggccttgatgctgagatggagattaaggaacattattttgaggtttgcgacataatagatggtttgtttgtagcaatatttaaacacttgaatgaaaattgcaagaaagaactagagacaataaacaggcaatatccatttgaacctctgaagtatttagagaaaactttgaagctcacgtatgaagaaggaattcaaatgctgaaggaagctggaacagaaatcgaacccatgggtgacctcaacactgaagctgagaaaaaactaggccggcttgttaaggagaagtatggaacagaatttttcatcctctatcggtatcctttggctgtgcgtcccttctacaccatgccttgttatgacaacccagcttacagtaactcttttgatgtctttattcgaggagaggaaataatatctggagcacaaagaatacatttaccagagctattgacgaaacgtgcaacagagtgtggaattgatgcgagtactatttcatcatatatcgaatcgttcagctatggtgcacctcctcatggtggttttggtgtcggcctggagagggtggtaatgctgttctgcgccctaaacaacatcaggaagacatcacttttccctcgcgatccacaaaggctggtgccataa</cdnaseq>

Protein Sequence

<aaseq>MSSEPPPDAAAAAASSAGDLAADLSSATISKKQLKKDARKAEKA EKASQRQQQQQPQADADDPFAANYGDVPVEEIQSKTISGRVWTEIGGLDEAAAGRSVL IRGAAQAIRPVSKKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSLSKESIVDV EGVVSLPKEPLKATTQQVEIQVRKIYCINRAIPTLPINLEDASRSEAEIEKAEQAGEK LVRVGQDTRLNYRAIDLRTPANQAIFRIQCQVENKFREYFLSKNFVGIHSPKLIAGSS EGGAAVFKLQYNGQPACLAQSPQLYKQMAICGGFERVFEVGPVFRAENSNTHRHLCEF VGLDAEMEIKEHYFEVCDIIDGLFVAIFKHLNENCKKELETINRQYPFEPLKYLEKTL KLTYEEGIQMLKEAGTEIEPMGDLNTEAEKKLGRLVKEKYGTEFFILYRYPLAVRPFY TMPCYDNPAYSNSFDVFIRGEEIISGAQRIHLPELLTKRATECGIDASTISSYIESFS YGAPPHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQRLVP</aaseq>

Gene Sequence

<dnaseqindica>225..755#1133..1243#1354..1467#1954..2244#2324..2434#2535..2588#3464..3543#3626..3741#4368..4482#4617..4743#acgcagcagttgagcaatcggtgattaaaaaaaaattccacacccaaaccctagccccgcaccgatccctctccctctcccgccgccaccgcctccgcctccgcctcccctcgcgccgtcgccgtcgccaagagccgccacttccgcttccgcctctgcctcgtccaagtccaagccaactacctaaacctaaaccctattcttcttctttcgcctccgccgcgatgtcgtcggagcctccacccgatgccgccgccgccgccgcctcctccgcgggggatctcgcggccgatctctcctccgccaccatcagcaagaagcagctcaagaaggatgcgaggaaggcggagaaggccgagaaggcgtcgcagcgccagcagcagcagcagccgcaggccgacgccgacgaccccttcgcggccaactacggcgacgtccccgtcgaggagatccagtccaagaccatctccggccgcgtgtggaccgagatcggcggcctcgacgaggccgccgccggccgctccgtcctcatccgcggcgccgcgcaggcgatccggcccgtcagcaagaagatggccttcgttgtgctgcgcgagagcatgagcaccgtccagtgcgtgctcgtcgccagcgccgacgcaggggtcagcacccagatggtgcgcttcgccacctccctcagcaaggaatcaatcgtcgacgtcgagggcgtcgtctccctccccaaggagcccctcaaggccaccacgcagcaggtctgctctctccaccattatgttgggtcaatatgatcatcaattgcatttgcatcaacccttggccgcagttgattagaatatgcattcggatagccctcttgtgatagctctagaatgctgaatatttcatgttagatgatggttctgcaatcgattggaattcacattgtgatagtcctcttatgatacctcttggaggctgaatattcatgtatggtggtttttgttggactttttgtatccatcttaatttaccgtcacaattagctcgatttaatcccgcaacataacttattatacggtgtgcacatttaaaactgtgctttgtttcagttagtactagctaatgaagtgtcttttgtttttgctggcaggtggagattcaggtgaggaagatctattgcatcaatagggcgatccccacccttccaatcaaccttgaggatgcctcacggagtgaggctgaaattgaaaaggctgaacaagtatgtatatgtgcaacttgcttgtacatccacaatgtatatttacaggatgcctataaatattataatcattgtgagacttaagaaattaaccactgctgccgtttcaggctggagagaagctagttcgtgtgggccaagatactcgcttgaactatagagctattgatctccggacacctgcaaatcaagcaatattcagaattcaatgtcaagttgagaacgtgagtatttatttatttatttttactgttatcatttttgtattagtggattgtattgtgccaacgatgctatgtgatctatagctcagttaacacattaaattttccattgaataaaaactactctggcaaatgttcatgctttcagcttagtcaatcttgcagtaataaacatttgcctcttgggaactaagctcaaactttgcacaagttattgctgtttggagatatactgatttggtgaccccaagatgttcccaataatctgtgccttgcaacttatctaattgcacttgtcaagggttagattcaatatgtttgtcttgagtgaaggccatgcgtgtagtatatattcatgtccaagccttatgtaggctaattcttaattcagtggaggttaaacaacgagcttctattatgttttctatcgcgtatgagcgtgttatattcattatggaaattaaatcgttgtcatgtattttgcagaaattcagggaatattttctgtcgaaaaattttgttgggattcacagcccaaagctaattgctggatccagcgaaggtggtgcagctgtattcaagctacagtacaatggacagccagcatgtttagcacagtctcctcagttgtataagcagatggctatttgtggtgggtttgaacgtgtatttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatctgtgtgagtttgttggccttgatgctgagatggagattaaggaacattattttgaggtaaggaaaattggatgaaagatgctttgtattagtataagcaaagtgatgctgactaagtgctgatttctcaacacaggtttgcgacataatagatggtttgtttgtagcaatatttaaacacttgaatgaaaattgcaagaaagaactagagacaataaacaggcaatatccatttgaacctctgaaggtgaacaagttcttgcctctttttgttccccttttataatattatctaactcatattttgatactatattagctaactcatattatgctaattcatacagtatttagagaaaactttgaagctcacgtatgaagaaggaattcaaatgctgaaggtaaatatcttgtttcagtcatcatctctatgttacctcttatttggtatgggtgaatttctgaacatatgtctgatctattgaatgaaccatattctagctgagggtaatatatgattttcttgttgggccttatatgagaaatctactaatggcccaggtttttactgagaatcctaaatatttcatgagcataatttacatgttggtatgcacattgtgtattttagcaatttaatgtagttcacatctttgttgcaatttggacctactgacccagatattggttggtaaaagcttcagtcattgcttcatcctgaaatagcaaccttgacattttcagtcatagaatcttaccaaatagatagatttgttggacattttgacagatgttcatggactaagcctagtaagctacctacaatggataccaaagaatcttgtctggtaatttggtttgttaacattgaccaattcatgacattaaacggaaattatttttcaaaaaaaaaaaaagaacagtgatgaatcttgatcaatcaaatctaaagaatgggactggggagagattcaaccccacagtatttttttttagtacgagggaggaagtgagcacaccaaccgtgttcgcagctcactcaaatttgatataatgaaatcctgtttttgctaaatatctagtatgttagaaacatgttattggcaactttgaagtagaacaggtgtacaacttacagatatactgggttatctgggtcgtcttttttagtaaaaccagatttaattgttgaactaattttttgcttaggtgttggcctaaaatgctttcacagaattatatccatagcgattaacatcgtggtttgtcctggcaggaagctggaacagaaatcgaacccatgggtgacctcaacactgaagctgagaaaaaactaggccggcttgttaaggagaagtatgcaaattcagcctgtagttacttattcgcttcttttcaaaagaaaatgtggtttgacaacttgctacattgtctgtaggtatggaacagaatttttcatcctctatcggtatcctttggctgtgcgtcccttctacaccatgccttgttatgacaacccagcttacagtaactcttttgatgtctttattcgaggtacgtaaatttgtttatttctttgagatgtttgaatttattacagtatatttcagtgtcatgcatgcatgtgtgaggataatgttacctgagcaggaaaacattattttcagtcctgctgcttataaatcctttgtattttagagccatattgttgtgaatcactatcctatatgaaattagtaatgacttccacttttcttcattgcatagtctgacacgcaaaaagatagataaaaatcatgacttgacagaaagtaaaccagaatatgctctatcctgccaaggacttgaattcgccacggggattacttaggatggcacagaaatgaccaacacctatttttagttagtcgcttaaatgcattccatccaatatgatgtgctaattggtcctgacggttagcttgattgagtgtttgatggtgcatcctatagccaacctaggtctgcacaaccacattgaactttgctatcaatttaaatttagtgaaaatttattcctttattatagtcgtgtttgcgtcatcttatctacttccatcagtagtcactatttgctatcactgaagaagatattcatcatgtgtagaagcatcctgttgaccatttttgtgatatgataggagaggaaataatatctggagcacaaagaatacatttaccagagctattgacgaaacgtgcaacagagtgtggaattgatgcgagtactatttcatcatatatcgaatcgttcaggtaagtttatttgtttatcatgttgttagtcctctaatattgcaacatatgttgtaatgctcatccaattttcttcttgtcatcatctaaatcacttcattcaactcatttcaatatatgggtcatcattgtagctatggtgcacctcctcatggtggttttggtgtcggcctggagagggtggtaatgctgttctgcgccctaaacaacatcaggaagacatcacttttccctcgcgatccacaaaggctggtgccataatttgctttttttcccaagagcaaggtttggactcagtacggactgggcagttttcctcggctggtttttttacctggacattattttcgtatttattaatgtgctgtactgcaaaagctgctcctttccacaacatttggaatagttgccgatacatttggaatagggctcaacgttggcgttgtgatttcgttgatgattccgctattcgtaacaatggcgaatccagagcagaaatgaccctatgtcagaaacatatcacatactcgtatgcctatatttccaaaagataagggattatggaaggatgacatattcaagtccc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0686400, RefSeq:Os02g0686400