Os10g0437100

From RiceWiki
Revision as of 08:39, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0437100| Description = Amino acid/polyamine transporter I family protein| Version = NM_001071210.1 GI:115482163 GeneID:4348708| Length = 63...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os10g0437100

Description

Amino acid/polyamine transporter I family protein

Version

NM_001071210.1 GI:115482163 GeneID:4348708

Length

6399 bp

Definition

Oryza sativa Japonica Group Os10g0437100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:16086670..16093068

Sequence Coding Region

16086979..16087099,16087387..16087462,16087569..16087675,16087759..16087885,16089498..16089678
,16089766..16089924,16090161..16090227,16090347..16090519,16090980..16091076
,16091160..16091278,16091378..16091518,16091592..16091676,16091789..16091990
,16092819..16093032

Expression

GEO Profiles:Os10g0437100

Genome Context

<gbrowseImage1> name=NC_008403:16086670..16093068 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:16086670..16093068 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaggcgcctctcgtggcaggatttgcaggcgtcgggctcggccatcgcgacccgcctctcgctgcaggacttgcagtgcctggtgcggaggaagccggcgtgctccgccgccgaccgcgccgagtcctcggcggcgggggcgccggccggtgggggcaaagggcggcacctcgccaaggcgctgtccgttcctgacctcatcgccatcggtgttggctcaacgattggtgccggcatctatgtcctggtaggaactgtggctcgtgagcatgcaggaccagccttgaccctttcctttctgatagctggcatagcagctgctctttcagcattgtgctatgcagagctctcttgccgttttccattggcgggaagtgcctatcactactcatacatttgcattggagaaagtgtcgcttggttgattggttgggctctgattctggagtacacaattggtgggtcatcagtggctcgtggcatttctccgaacttggctctattttttggtggccatgagaagcttccctttttcctaacacaaatacatgttaaatggtttgaaaccccgcttgatccttgtgctgctattcttgtattgatagttactgcattactttgcctgggaattaaggagagttcatttgtggaaggcatcatcaccattgcaaatgttatagttatgctgttcgtcatttgtgctggtggatacttagcattccagaatggctggagtggctataatgatgaacaaggttacttccctaaaggtgtggctggtgttctatctggatcagcaaccctcttctttgcctatattggctttgatgcagttgctagcacagctgaagaggtgaagaatccccaacgtgatcttccatggggaatgtgtctgaccttgtccttgtgctgcttcctctacatgatggtttctattgttattgttggcttggtgccatattatgcattggatcctaacactcctatttcatctgcttttgctaaatatggaatgcaatgggcagtgtacattatttccactggggctgtttttgctcttatagcatccttgataggtgctattctccctcagccaagaattgtgatggctatggcaagagatggattgcttccaccactcttttcagctgttgatccaacgacccaagtcccaaccttgagcacaatattgtcagggatatgtgctgctatcctggctcttttcatggacgtctcagaattggcagggatggtaagcgtgggcacactattggcatttactatggttgccatttctgttttaatagtgcgatatgctcctccaaatgagatagcaacgaaagtggctcttccaggttcatctgaatcactaacttcagactctgggtattcagaaccagatgaggaaaattcggaggatcttttgggcaacgttcaagacatacctactgccaatgaagccaacaagataaggcgacagaaagccatagcatgcattatactaatttttcttggggttgtcaccattgtttcttcagtttctttctccttttttccgttatttttgcgatccattgcaggtgcctttggtagtttgcttttggttagtgctaccattgcactctggttcattgggcaagacaagagctctttaagacaaaccggaggttttatgtgcccatttgttcctatacttccagtatgttgcattctcatcaacgtatacctgcttatgaaccttgggattcatacgtggattcgtgtttcgatgtggctagcggttggtgccatcatatacgtcttctatgggaggaagtacagctcactgacaggggtagcctatcaacggatttcacctgcatag</cdnaseq>

Protein Sequence

<aaseq>MARRLSWQDLQASGSAIATRLSLQDLQCLVRRKPACSAADRAES SAAGAPAGGGKGRHLAKALSVPDLIAIGVGSTIGAGIYVLVGTVAREHAGPALTLSFL IAGIAAALSALCYAELSCRFPLAGSAYHYSYICIGESVAWLIGWALILEYTIGGSSVA RGISPNLALFFGGHEKLPFFLTQIHVKWFETPLDPCAAILVLIVTALLCLGIKESSFV EGIITIANVIVMLFVICAGGYLAFQNGWSGYNDEQGYFPKGVAGVLSGSATLFFAYIG FDAVASTAEEVKNPQRDLPWGMCLTLSLCCFLYMMVSIVIVGLVPYYALDPNTPISSA FAKYGMQWAVYIISTGAVFALIASLIGAILPQPRIVMAMARDGLLPPLFSAVDPTTQV PTLSTILSGICAAILALFMDVSELAGMVSVGTLLAFTMVAISVLIVRYAPPNEIATKV ALPGSSESLTSDSGYSEPDEENSEDLLGNVQDIPTANEANKIRRQKAIACIILIFLGV VTIVSSVSFSFFPLFLRSIAGAFGSLLLVSATIALWFIGQDKSSLRQTGGFMCPFVPI LPVCCILINVYLLMNLGIHTWIRVSMWLAVGAIIYVFYGRKYSSLTGVAYQRISPA</aaseq>

Gene Sequence

<dnaseqindica>5970..6090#5607..5682#5394..5500#5184..5310#3391..3571#3145..3303#2842..2908#2550..2722#1993..2089#1791..1909#1551..1691#1393..1477#1079..1280#37..250#ggtcccctcccctcagccactcgtcgtccctcggccatggcgaggcgcctctcgtggcaggatttgcaggcgtcgggctcggccatcgcgacccgcctctcgctgcaggacttgcagtgcctggtgcggaggaagccggcgtgctccgccgccgaccgcgccgagtcctcggcggcgggggcgccggccggtgggggcaaagggcggcacctcgccaaggcgctgtccgttcctgacctcatcgccatcggtatcccgcgtcgccttgttctaatctccgcctcttcgttttcatcctgcgtagaacaccctagaagaaatgaggcgtgtgtttcttttaattagttgtagcagcagttcatctttggagtattgttactactagcccgtgctttgctacggattaaaacaatttaatagtgaggtttttgggacaattttgtacctggagatgttctattgttcaggtgaaatatgatagaatcatatatgtagatggattattttatagcataaaagtatatggggtagttagtagaaaacatgatgaattagatggtaaataaaaaaaatattatacttggtgtttaagaagagtatagattattaggagttggtcttggaggaactctgaatctgtttggttgggttctggattgcttcaagataatacaatgcgtaatgcattcttagaatctactagtatctctcctccttcagtttgtgcctagtgcctaatggcatgctgcgttggtgtcaactggcaattggcaaatcatatgaatgtgagaatgtctactcagatagatagtaagatcactagtttgatcggagtattgacttctcgctgtccgattacttatatagcaatgaaacacaagattaccaagatatctcagatgtgtaccatctggtagttctaattgtcatggaggagctctgacataggttcttggtttcagagtttcaggctttcaatcacattagccatagaagttatttttgttcttgcattgacttgtacttttaggaacttatgatatgtcatgtctcactgagttattgcgatgttcgacaggtgttggctcaacgattggtgccggcatctatgtcctggtaggaactgtggctcgtgagcatgcaggaccagccttgaccctttcctttctgatagctggcatagcagctgctctttcagcattgtgctatgcagagctctcttgccgttttccattggcgggaagtgcctatcactactcatacatttgcattggagaaaggtagaatacaactgtactactactgccccctcattctcttatacttagcctttgtcctatatattttcacttaaattttctcttctacttcttgttgacaaattatgatcagtgtcgcttggttgattggttgggctctgattctggagtacacaattggtgggtcatcagtggctcgtggcatttctccgaacttggtaatactccctataaagctctcttcagatgtatgaatagataagtacttactgtttttctattttttttcaggctctattttttggtggccatgagaagcttccctttttcctaacacaaatacatgttaaatggtttgaaaccccgcttgatccttgtgctgctattcttgtattgatagttactgcattactttgcctgggaattaaggaggtaaattgtgctgttcgatatctatgcatagcttgaagtccatgaattacctactacttacaattctgtagtactgaagtatgaaccatgccctctcagagttcatttgtggaaggcatcatcaccattgcaaatgttatagttatgctgttcgtcatttgtgctggtggatacttagcattccagaatggctggagtggctataatgatgaacaagggtaaagctaagacttgtgcttcacattttcaatacagaattccatatgcatatagctctgatatttgcttggttggtatgtagttacttccctaaaggtgtggctggtgttctatctggatcagcaaccctcttctttgcctatattggctttgatgcagttgctagcacagctgaagaggttggcttttattctgctatttattaattaatttgttttgagcaaatttcacaaaactgcaaaatttgtggtaaaaccatcacaagaaccatacttccttttgcataatgtttcactaaactacgtctgggtccacttggtggtctcacaagcttacttatttcatttactaaaacggataagcttgtgagactatccagtggatccgacctgtcaatacaatagccatgcaagtctattttcgtgaaatgtatgtaaaagaactgctctgctagaatggtcgcttgaatacgtacatgtgttttattttgtttaccaaagatattgcgattttatgaaaattactcaattagttatgttcctatttggtgttaactctatccagagtctggtacttcagggaaggccattataaatctgcagttacacaattatctttatttgtcaaggtacttttcaggtgaagaatccccaacgtgatcttccatggggaatgtgtctgaccttgtccttgtgctgcttcctctacatgatggtttctattgttattgttggcttggtgccatattatgcattggatcctaacactcctatttcatctgcttttgctaaatatggaatgcaatgggcagtgtaagtactagatatatatatatttaaatcgaattgcttgactattaaggagattatcatctcatgctgtatatatgttagtgttaagcatccatgtaattatctctgttattatgtaggtacattatttccactggggctgtttttgctcttatagcatccttgataggtgctattctccctcaggtatgtgtctacgtgaattgagaaactaaagcatctgtatatctccttcccagttgaattcctttctcatcctacaggatacataactgatagcttgactagaaaatgtaataagttaagcttcttaacgttagcttattttttaaaaaaccatctcatgtttatatatgatagatgatcatccaaattacaccaggaaaaaaactgactaattacttccaatgccttttggctagccaagaattgtgatggctatggcaagagatggattgcttccaccactcttttcagctgttgatccaacgacccaagtcccaaccttgagcacaatattgtcagggatatgtgctgctatcctggctcttttcatggacgtctcagaattggcagggatggtaatatgttacttgccatgtaatacggtagctttgctgagtggagagctactccaggtagtaataatttcttgattgtttgttcaggtaagcgtgggcacactattggcatttactatggttgccatttctgttttaatagtgcgatatgctcctccaaatgagatagcaacgaaagtggctcttccaggttcatctgaatcactaacttcagactctgggtattcagaaccagatgaggaaaattcggaggatcttttgggcaacggtaatgaaaatactagtgatttgtataccttgagttgattttacttaacactagtggcaagataaaaatcattattgacaaatgaattactccctctgtattttaatgtatgacgctgttgactttttgaccaacgcttgaccatttgttttatttaaaaaatttatataattatcatttattttagtgtgacttgatttatcatcaaatgttctttaagtatgacataaatacttttatatttgcataaaaattttaaataagatgaatggttttagggaatacgcgagacgcacatttttgtattaagaggaataaatgtatgtacagagcgggccggaaaaattaaaagtgaaggggacagggtacaggagggggaaagaaaaaaaaagcctaatctcccgaaggatttggcgacccatgtacaaacgaatggactaccatggccggtatggctgatctagtcatccgccaaaggtccgcttcccttgtcatagccctagctatctccatccaaggcctgctcttctggttgaagacccgattgtttctttccttccagattgtccacgctaccagtgtcgcaattgtgttgaaccctcggcgatgatccttaatcatccttttgcgactgtcacacaaccaagtatggcaggactgctcgttgagtggtagacattcggaatgaccaatagcgctaagagcaatccaccaaagctgccgggactctgggcatgcgaccaagagatgatcaatcgtttcatcgcattgatcgcagagggggcagcgatccgggtgcgacaagcctcaacttcgaaggtggtccaccgtccagcatcggttgagagcgaccagccaaaggaagtaatgacatcgaggaggggcataagacttccagattggcttgtgttggaagtgagttcttccaaagaagagaacacgataagccaagcgggaggagtactgccccgagttctcccaatgccaagaaagcctgtccggctcctctgacagctgcactgatcgaaggagcgcccaaaatttgaagtactcaaggatcgcttgcacccccaatgccgaagagatatcgcgaatccatctcctgtcgtgcagcgcctcagccaccgtgcgcttgccccgcaagcggcctgggacagccgcccatactgccggcgccagtgaccaaattgaagtgccctgcagccaacaatcttcccagaacaaaataagatgaatggtcaaacgttggtcaaaaagtcaatggcgtcatacattaaaatacggaggaagtatctaattaaacatcaaaagtactgcacatgcctgatttagttcttatgcttcctgtttgcctttaccagattgcctctactaacataaattaggtgtttgatactttttttttgagataaggtgtttgatactttgataaaaaagataactcctctttagtattgttttgttttatggttgtaatcccacttctcaattgcctttgcatgatattaatgtattatctgtttgtcattagttcatcactttcaaaatactttgtataacagcctcatagttactaactttctgattttttcccccttcttaatgcgttcagttcaagacatacctactgccaatgaagccaacaagataaggcgacagaaagccatagcatgcattatactaatttttcttggggttgtcaccattgtttcttcagtttctttctccttttttccgttgtaagtgaaaatgaaaccacccactgcaaatttttttgacttgctcttgacacccactcatttgatctgtttcctttctgtagatttttgcgatccattgcaggtgcctttggtagtttgcttttggttagtgctaccattgcactctggttcattgggcaagacaagagctctttaagacaaaccggaggtacaaagactatggccattatactactacgaaattgacaaaatttatgtaacttctgatctatacagtttacaaataacatcaaattgtctcctttgttcctcaggttttatgtgcccatttgttcctatacttccagtatgttgcattctcatcaacgtatacctgcttatgaaccttgggtgagcaacttgggttcaagattagcttttgctctgatttactttgcatcttgaagcttgcaccgtctcctattatattatctagtagatttgcaaaatcatgaaaccaaaatcaccattattcaattcacaatacactgtaaacagatgatctggatagattaaaatagaatgaactatctaaacctatacttgtgagttgtgagattagcaacttctgaaaacgatctggatattatcatatctgatatcacacgtactcacaccctttgattcatcgttcgcaggattcatacgtggattcgtgtttcgatgtggctagcggttggtgccatcatatacgtcttctatgggaggaagtacagctcactgacaggggtagcctatcaacggatttcacctgcatagatcactgtgggggttgttcatctgtacatggcgattaacttgtacagcttccgttgattttccctttgacaaatttcacagttccaatcttcaatgaactatcaaaagtcttgaagctctcagagatcatctcacagaaatggtcttcatgtgtagcccagcgtgttttgagcaagaattcgagcaaaagcataacaacagtggcagcagcagaagcacagcacattgtgtaactgcttagaattttttgtgtctttctatagtcagttttgacagttttaccatcacctgtaaataataaatgttctc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0437100, RefSeq:Os10g0437100