Os02g0688900

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Revision as of 02:47, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0688900| Description = GPI transamidase subunit PIG-U family protein| Version = NM_001054316.1 GI:115448002 GeneID:4330366| Length = 4188 b...")
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Gene Name

Os02g0688900

Description

GPI transamidase subunit PIG-U family protein

Version

NM_001054316.1 GI:115448002 GeneID:4330366

Length

4188 bp

Definition

Oryza sativa Japonica Group Os02g0688900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:29139533..29143720

Sequence Coding Region

29139753..29139827,29140028..29140084,29140157..29140242,29140350..29140407,29140544..29140712
,29140782..29140838,29141167..29141414,29141516..29141592,29141802..29141936
,29142407..29142531,29142790..29142822,29142969..29143029,29143409..29143456
,29143559..29143691

Expression

GEO Profiles:Os02g0688900

Genome Context

<gbrowseImage1> name=NC_008395:29139533..29143720 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:29139533..29143720 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatccggaacttctggtcgatggccgcggcggccgtcgggttccggctcgttctcgtgctcttcggcggggacctccacctcgcctcccgccccgaggtctccacccccctcacctccatccgccgcctggcggaagggtactggctgaagcaggcttccatgtcgccctactccggttcaatgtatcatggttcccctttgcttctattggttcttggtccattgactaacaaaaggtctgttggacatcatgatcatatatattgcagtttgatttttgtggccgtagattttatagctgccatgcttatccgagcaactggtcgtagactccaaatagcacgcaacagaaacttgaagtcacttgagctcacagaggcagtgagtaattcagttaacgtaagtgcaggagatattgcttccctcatatatttgtggaacccctgggcaatagttacttgtgtgggttcatgtacttcacctatcgagaatttaatggttgtgataatgatatatggagcctgttcacgtcttgctcctcttgctgcctttggatatgttatggctacacatctctctctttatcctgcaattctcattgtaccgatcattcttttattgggatatggtccagatgctcctccaacaaaagtatttcgtataaaaagctcaagtgccagtaaaactgacgtatcagacaatgataaaagttctagctcaagagatgttcaacaattcttgtggaaaccagttttccacttcatattgtggatgcttttctggacattttatgtgttgctattgagcagcatagttctaaataaagtgggtggtcttcaggagatgtttgaaaagacatatggttttatccttaccgttaaggacctatcgccaaatattggtgtattatggtacttctttgctgaagtctttgactttttcagaagcttcttccttatagtcttcaatatgaacattgtttttatggtattaccattggcaatccgtctgaagcatcgtccatgcttccttgccttcatttacacagcaattgtcgcaatattgaaatcgtatccatcggtcggagattcagctctttatcttggtcttttgggcctatttgctaatgaattagcagagatgcaattcactttcttcttgttttttggatatatcggagtctctctccttagccctgtcatgcacaacctgtggatctggagggggactggcaatgcaaatttctactttgccactggtttggcttacacttgccttcagaccgtgttggttgtagagagtgtaagttcaatgataaagcatgacaggaagctaagattacttgttacagcttga</cdnaseq>

Protein Sequence

<aaseq>MAIRNFWSMAAAAVGFRLVLVLFGGDLHLASRPEVSTPLTSIRR LAEGYWLKQASMSPYSGSMYHGSPLLLLVLGPLTNKRSVGHHDHIYCSLIFVAVDFIA AMLIRATGRRLQIARNRNLKSLELTEAVSNSVNVSAGDIASLIYLWNPWAIVTCVGSC TSPIENLMVVIMIYGACSRLAPLAAFGYVMATHLSLYPAILIVPIILLLGYGPDAPPT KVFRIKSSSASKTDVSDNDKSSSSRDVQQFLWKPVFHFILWMLFWTFYVLLLSSIVLN KVGGLQEMFEKTYGFILTVKDLSPNIGVLWYFFAEVFDFFRSFFLIVFNMNIVFMVLP LAIRLKHRPCFLAFIYTAIVAILKSYPSVGDSALYLGLLGLFANELAEMQFTFFLFFG YIGVSLLSPVMHNLWIWRGTGNANFYFATGLAYTCLQTVLVVESVSSMIKHDRKLRLL VTA</aaseq>

Gene Sequence

<dnaseqindica>3894..3968#3637..3693#3479..3564#3314..3371#3009..3177#2883..2939#2307..2554#2129..2205#1785..1919#1190..1314#899..931#692..752#265..312#30..162#agatcggagttgcggcagcggcggcggcgatggcgatccggaacttctggtcgatggccgcggcggccgtcgggttccggctcgttctcgtgctcttcggcggggacctccacctcgcctcccgccccgaggtctccacccccctcacctccatccgccgccgtaagcgctcccttgctcccctgcctcctcgtcccagacttgagctgtgctgtgttgtcgccgtaattggactaatagcttgttttcctgtgtgttttgcagtggcggaagggtactggctgaagcaggcttccatgtcgccctactccggttcgttccacacatcttaatcttgcttgattacttttttttgggggggacaactgaagtcgtgaattgttgagctcagtatagggatggaattactagctacatgagagcacttttaaaagtaaagtaaattgattgggtgctacttcttctagtaagctccattaagcatgaactgctgcaagcccgcactaatggggtgtgttaaaaaaaataagcgcaaaattgccataccttttacttagcaaataattgtgcaggtatttgtcattgttataggtttatccatgatgttttagtagggtctctttgcaatgtgtttttcttgtagcatgaactggaagtgattattcagcacggtgaatgttttgtctttcaggttcaatgtatcatggttcccctttgcttctattggttcttggtccattgactaacaaaaggtgatcaattccttgtctatgatgcttctctgatcgcaattggttgcactactgcagctatatgctttgacaggattggtttattttatcacaatatcagatcaatgtttgaaatactcacatccttgtatttcatggtattacaggtctgttggacatcatgatcatatatattgcaggtaaataagttgttatgtaattttttccattacacctaggatctgtgtctctattctctaacagtattagccacttgatttccatggatgaaaaggattttctatgatgattttttaaattatgttcttattatttttatgttaccatgtaatgattcagaccaaataaaaaaaatgaagcctccaatgtactccattatctttttgaactatgttggagatcttgtaatttatattacactcatgaatgcaagacagtttgatttttgtggccgtagattttatagctgccatgcttatccgagcaactggtcgtagactccaaatagcacgcaacagaaacttgaagtcacttgagctcacagaggcagtgagtaattcaggtgagcactatagttgaggacctacagttttgtgtccctccttgcagaatatgctttattggatactgacctagttgttcttagtttgttgacactagttatctacttgtttttaccaatggagtagcatacagagcttcttgcagaattatattatcaaagcttcaaatatttcattgactcattgaattgtcattctttattgtagagccaatctagtctttcataatagagatgcacggaattgctatgaaacaacttattttcagattaatacatcatttcggaatgatttttttttaaagatgactgtgattctagcaacttataaggtgtaaaattgaaacgttatacttgaatcaaaattagtgattcttcatttactaatgatagtctgatgctttcatcttgtgattacttaatgtttgttatgcagctacttattgttcttattgatactgttcctgcagttaacgtaagtgcaggagatattgcttccctcatatatttgtggaacccctgggcaatagttacttgtgtgggttcatgtacttcacctatcgagaatttaatggttgtgataatgatatatggagcctgttcacgtaagtgcaactcaaattcgtgtttctcttcaacatgttctgctatttttaaattttcagtagaatcatttttgttatgtaaaaagggccttcatttggcaaagcatcagtagcaacaatttcatgaagacagtatctatcttttgagtgacatagaagtctaacaagttctcatgctgtttaaaacttggaatgtctctaatttttaggtcttgctcctcttgctgcctttggatatgttatggctacacatctctctctttatcctgcaattctcattgtaccggtttgtgtcacaagctttgtttgtactcttatattcatctatttgataatgccttccattacctgtatagtcagctattgagaacaaagttctttttccagatcattcttttattgggatatggtccagatgctcctccaacaaaagtatttcgtataaaaagctcaagtgccagtaaaactgacgtatcagacaatgataaaagttctagctcaagagatgttcaacaattcttgtggaaaccagttttccacttcatattgtggatgcttttctggacattttatgtgttgctattgagcagcatagttctaaataaagtgggtggtcttcaggagatgtttgaaaagtaagatactcaactctttgttagtagaatatatatgcttctttggtactcatgaaaatttgtgtttgagtgagatggggggactgtgctagtttatgttactttccctcactaaagataagttttgaaaggaggaacgaggacagattttcttaaggagtactgtttctggtattagcatgtttgatcttatgctagtaacaccatgttgctctatccactccaacatgtcaactttgttgtgccttagttcatacttagttcttttcatttgaaatcaattggttttatttgccattacctattgacttgtgctgtgtttctgcaggacatatggttttatccttaccgttaaggacctatcgccaaatattggtgtattatggtgagttttgatcaaattatgtaactaactcaatgatattccatttgtctcattaaaggggttgtgcaggtacttctttgctgaagtctttgactttttcagaagcttcttccttatagtcttcaatatgaacattgtttttatggtattaccattggcaatccgtctgaagcatcgtccatgcttccttgccttcatttacacagcaattgtcgcaatattgaaatcgtatccatcggtaagtacacattacatgataatacctataaatttagtccctcggttgtgtaaaatttcatcaaactgtttttgttgtgttgtcctgatttttttcccacaagttcattgataccatattatgatttatcttgaaggtcggagattcagctctttatcttggtcttttgggcctatttgctaatgaattagcaggtgcttaacatttcttttaacatattttgaatgactcctagtcctctagaaaactaatggtttagttttacactacaacactaatggtttctctttacattttgtagagatgcaattcactttcttcttgttttttggatatatcggagtctctctccttagccctgtcatgcacaacctgtggatctggagggtatctccctctcccatccttcccctctcttagtattgtgtgccactgatactaacatgacaataatttcaggggactggcaatgcaaatttctactttgccactggtttggcttacacttgccttcaggtaaccaatatgttccgcattatttgttgtgctatgcttgccatggccagtacttagctaagcactcttgcgttttacaacttctctagaatgattagtgctgaatgttatcgtaagatgataaaacgtttatcctaagtcctactatgcattttcctttctaaacttgaatctaaattgtttttgccacttttttgcagaccgtgttggttgtagagagtgtaagttcaatgataaagcatgacaggaagctaagattacttgttacagcttgatttcattctctctaagttcaacaactctgacgctttagtgtttttgcttgttctcccggatacaagcgtgtttttttgggcagagtttggagtatatgtagtttattatttttgtagtatatgtattgttacgattgttatttgtaccgcccgtgtttgtaaaatatggaccacaaatcatgtaacccagtagactactagaaagacaccaggtttcccc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0688900, RefSeq:Os02g0688900