Os02g0734600

From RiceWiki
Revision as of 02:52, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0734600| Description = Similar to EFA27 for EF hand, abscisic acid, 27kD| Version = NM_001054575.1 GI:115448520 GeneID:4330644| Length = 12...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0734600

Description

Similar to EFA27 for EF hand, abscisic acid, 27kD

Version

NM_001054575.1 GI:115448520 GeneID:4330644

Length

12203 bp

Definition

Oryza sativa Japonica Group Os02g0734600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:31529253..31541455

Sequence Coding Region

31529420..31529528,31529610..31529735,31529866..31529951,31539388..31539595,31539698..31539832
,31539959..31540044,31540552..31540646,31540799..31540924,31541027..31541177

Expression

GEO Profiles:Os02g0734600

Genome Context

<gbrowseImage1> name=NC_008395:31529253..31541455 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:31529253..31541455 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtttgagagtagaaacagccggcgaagcgtgacgatggacgctcgacggcggcggctgtccccggtggtggtcgtagcggcttttcttttcttccccctgttcttcgggagccagccggcggcggcgtacggcgaggcttcaggcgccggcggcatgacggcactgcagaagcacgcggcgttcttcgacaaggacaatgacggcttcgtctccccgaccgagacatacgacgggttacgcgccctcggacttggagctggcttctccatcttaagcgctgcgttgatcaatggcgtactttcactcaagaccagacctcgcggatatctggacacagaggccacacgccgtcgagactcgagagattcaggaacagaaaccgccgagagagttcgtagcagtcaacgcgcgaggcagggccgagaagaaaccgccggcgacgcacgcgcgatggacgctcggcggaggcggttgtccccggcggtggccgtggcggcggctcttcttttcttccccatgttcttcgggagccatacgccggcggcggcggcggcgtacggagaggcttcaggcgacgccggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgtctccctctccgagacatacgacgggttacgagcactcggactcgggtctggcctctccagcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacctgacaatggaacagcaccacgcttatctatctacatagagaacatctacaaggggattcatggaagcgattcaagcgcctatgattctgaaggaaggttcgttgctgaaaagtttgaggagatattcgccaagcacgccaagaccgtgcctgatgctctgacatcggacgagatagacgagctgcttcaagcgaaccgcaagcccggtgactacactggatgggtcgcagcatcgtcagagtggaagattctgtacaagatcggcaaggacaaggacggccttcttcgcaaggaggccgtgcgagaagtctacgatggaagcctgtttaccaagctggcggcggcaaggataaacgacgaaaaccaagcatga</cdnaseq>

Protein Sequence

<aaseq>MFESRNSRRSVTMDARRRRLSPVVVVAAFLFFPLFFGSQPAAAY GEASGAGGMTALQKHAAFFDKDNDGFVSPTETYDGLRALGLGAGFSILSAALINGVLS LKTRPRGYLDTEATRRRDSRDSGTETAERVRSSQRARQGREETAGDARAMDARRRRLS PAVAVAAALLFFPMFFGSHTPAAAAAYGEASGDAGVTALQKHAAFFDKDGDGIVSLSE TYDGLRALGLGSGLSSLSAAFINGVLSPKTRPDNGTAPRLSIYIENIYKGIHGSDSSA YDSEGRFVAEKFEEIFAKHAKTVPDALTSDEIDELLQANRKPGDYTGWVAASSEWKIL YKIGKDKDGLLRKEAVREVYDGSLFTKLAAARINDENQA</aaseq>

Gene Sequence

<dnaseqindica>168..276#358..483#614..699#10136..10343#10446..10580#10707..10792#11300..11394#11547..11672#11775..11925#acacgtctccaaaagactcgggagaagagatctaacagtcaactcgtaaaatactccctacgtttcatattttaaattatttgactttttttagttaaacttgttaaagcctatgtttataaaaaatatattagtattttaacataaaataaacatattataaaaatatgtttgagagtagaaacagccggcgaagcgtgacgatggacgctcgacggcggcggctgtccccggtggtggtcgtagcggcttttcttttcttccccctgttcttcggtaaggctgcgatttccatctctctcttcttcttttctttttccctttttttacattttttgtttggttatgtcctgaaagggagccagccggcggcggcgtacggcgaggcttcaggcgccggcggcatgacggcactgcagaagcacgcggcgttcttcgacaaggacaatgacggcttcgtctccccgaccgagacatacgacggtgagcttcaaaggccttctaaatttctagtactttctcgtttcgcttgtgaactgaacacgatttggttggtcttggtctgcgcgtattttcgcctcattttatcctctcatggttgcatgcatcgcagggttacgcgccctcggacttggagctggcttctccatcttaagcgctgcgttgatcaatggcgtactttcactcaagaccagacctgtacgatcagtatctctctctctctctctctctctctctctctctctctctccggctcaaaaaactatctgaagtttttatcgttttatttactgaatttaaggtgcctcactagtcactacaatgacgtgccgttttgagagttgttatcatcgcttaactactgatgacaaatactccctctgtccctaaaaaacgaatctaaaactgaatatgacatattttagtactatgaatctggacatatgtatgtccacatatatctagatttgtagtattaggatttatcattcagtactaagttgatttttatgggacggagggggtagttgtgtagtgttaggctatcaacttcagtagtggcttagtatagttcgtgtgccaattttttttagtatacggatacatatttgaagtattaaacgtagattaataacaaaacaaattacagattccgcctataaactacgaaatgaatttattaagcctaattaatccatcattagcaaatgtttattgtagcatcacattgtaaaatcatagcgtaaaagattcgtctcgtaatttacagtcggactgtgcaattgtttttttttcatccatatttgatgctctatacatgtgtgtaaatatttgatctgatgaaaaagttgaaaatttgaaggaaaaagttagaatctaaacacggccagtattgaaaatctaacccttccatgtacttcactgctactgtcctgatcagacctcaattctggacagccgcttttcttctacagtaatgttctataattattatttttttctctaagatcgttagaacgtctctccatgtactcgttttaggttataagatgttttgactttggttaaaatcaaactgctttaagttttaccaagtttatagaaaaaaatagtaatattttttaccaaagataaatttattataaaaatatatttaattattaatttaataaaactaatttagtaatgtaaattactatgtttgtatataaacttagtcaaacttatagaagtttgactttgaccaaagttaaaatatcttataacctaaaataaaaggagtatgtttttaagtgaaccatttccaatgaatgacacattacatacaaaaaaaaaaggcgtcaaattaatcgttggatcatgttgaattcacgcaggacaatgcaacatcaccacgcttagataatgggaatttataaaacccggcttctacaccaacggggatgtatacagccacagaaaatccgaccaaacaagctcagttcatacacacatgttcacaaacaaaaggagcacaaaggctcaagcacaccttacataaaactaaaagagcacaaagacttccaacgcctttcaaagtgaaaagaccttccaaataaactaatgaccacattactcctttaaccgctttctcatgttccatccatctttaccaaagaagtgcatgacagatgtctctaacagtttgcatccttccttcatcacatcgcgctcatcttctttaagcagcaaggaccattgtcgagcccaatacgtccccctgaaaataacctgcaagtaagagttaaaattggagccattgaagaccacatcatttctacaaatccacattgcccacaacaacgccacaatccctataaagatttggtgctttagcctagattgtaaaccctttagccaaatcccaaacatattagcaacactgttaggcggatttatcccaaatgttataaaaagggtactccaaacaaatctagccacatgacaatcaaaaaagagatgttgtatcgtttcattgtggttacaaaaacaacacttagtgatgcccttccaatttctttttgctagattgtccttcgtgagaatcactcccttctttaaataccagaggaagattttgtttttcaaaggaattctaagcttccaaattaaatccttccttggcactacattctcatacataatcattttatacatggaactaaccgaaaatattctggttttgttaactttccaaataagcttgtctctatggtttgagagcctaacaagaaccactttagccactaggttaaaccatgcaaccaaattctcccccaccaaagcccttctgaactcaacatttaacggcactttatctataacatccgcaacaatagcattcttattccttacaagattgtataaattagggtacaacttttcaaaaggtaaatcaccaatccagcaatcctcctagaatcttatctgagaaccatcccccaccttaaaggcaccgcctttaaaaaagacatccctcatccccattagcctagcccagaaatgtgaatctccagggcgtttctcgacttgtgtgatggttttcttagtcaagtatttattcctaagaatgtcctgccaaaccccttcttcattgatgagtttgtacaactatttgctaagcaagcatttgttttgtatctctaagttccgtatacccaagccaccacattcctttggtttgcacaatacactccatcttgctaacctatacttcttcttatgttcatcacattgccagaaaaatctagatctataatagtctagctttttgagaatacccttagggatctcaaagaaggacaacatgaacatcgctaaactacttaacactgaattgataaggaccaaccttcctcctaccaagagaaattttcctttccaactactcagtttcttttgaatcctctcctccacaccctgccaatccttattgttgattctcttgtgatgcattggaatccctaagtatttaaaagggtaatccccggtatcacacccaaataatttgacgtactcatgctccacatcttttgccttgccatagcaaaataactcactcttatggaaattaatctttaagccagataatttctcaaatgcacttagtacaagcttgagatctctggcttcatcaagatcatgatccataaaaagaatagtatcatcagcgtattgtaaaatagaaagaccattatcaactaaatgaggtaccactactttgaatctgccttgatctttcgctctttgtattaaaatggctaacatatctgcaacaagattgaacagaataggtgacaaaggatcaccttgcctcaaacctttccttgtttgaaaataactcccaatctcatcatttactttgactgccacactcccacccctaacaatcgagtcaatccaatcgcaccacttagaagagaaacctttcattcacaatgactgttgtagaaacttccaatcaactttgtcatatgctttctcaaagtcttgctttagaatcacccattcttctttttcttgtgcaattcatgaagtgtttcatgcaaaattaccactccttccataatgttccttcctggcaggaaagctgtctgcgaaggtttaatgaccttctgagccactagggctattcgattggccattatcttcgtaaaaattttaaaactaacattcaacagacaaatgggcctatactgttgaattctactagcgtccttttgtttgggaaggagagtaatgattccaaaatttaatctgtgcagtggcaaagttccttcataaaaatcgtgaaagagggccataagatcatccttgattacatcccagaacacttggtaaaactctgctgggaaaccatcaagtcccggagctttgttgtgttccatttgaaaatttgcttctttaacttccaactccttgaagctttcactcaacaactcattctcaacatccgtgacttgtgtaatatcatctctttgggattccaccatagaaaaattattttccttcggcgctccaaaaagatttttataatacttggatatgtatttctttaattgcacatcacccttaatcacaccctcctcttgctctaattgaaagattctcgtcttcctatgcttgccattggccactaaatgataatatttcatgttacggtctccttctattatgtgcttagtttttgccctttggtaccattttatttcttcttccctcaacaattgggccaatctattttttacaaagagtttcaaatctaactcctgattagacaacagttggacttcagccttcttttctagcttgtctgcttttgctatcaaaagaaccttctccctcttgttcgccccgctaacattcttcgcccaccctctcaaaaactgtcagagcctacgaatcttaaattgccatttttccaacatattagaccctctactttcctttctccaaatgtctgctactagatccacaaagccatctcttagcaaccatccaagctcaaacttgaacaacagttgtttattagcatgtgtcccagcccccgtatccagcaacaaaggagtatggtcagagagttctctattaagagccctgacagttgctaacggatacttttgttcccattcagtactcattagcactctatccaacttctcaaaagttggattgtgcaacgagttggcccatgtaaattttcgaccagagagttctagttctctcaaatccaggctgtctatgacagcgttgaacaaaaaaggccactttacattaaagttattattattcttttcactagccttccttatgatattgaagtctcctcccataagaataggtatagactctttattacaagcattaacaagctctacaaggaaagcctccttatattcttcttgtgttgccccatacactgccagaacgcaccattggaagccatctaccttattttgcacatggaactttacatagaaatctccctcatctatacttgcaacctcaaagaattccaaattaacccccaaaagaatacccccaggtctccccttcggtcttgtccaatgccacataaaatctttaccaccacaaatattttttagactagaatatgaaaaatcatgttttccagtttccaaaagagtaatgaagtctagcttccactccttggaagtctctgaaaggaatctaaatttagccaagtcacctagatctctgctattccaaaaaattcctttcatgacatacttttcttatttttcaagatcactttcaccttttgtcccttgtttcttttgaagaatgacttggacttataaaccttgaaacccttttttaagtcacaacttaggtgatcgggttcttcgtccataacttcgtccactaagccaccacataagtgaccaaggactaagttatccaccatctcatcctcctctgactcaagttctccttctatgtttccaactaaatcagctttaggtgcaacataatttctaagtctagtctcttcaacatttttcaaactaattattgaacctaaaatttcagcactagagctaccaagattaatacctatgttgcataggttatcaataatagaaggacaagacaaagacaaaaatgaaccattaacatcattacctgactttatctatctacatagagaacatccataaggcgattcatggaagtgatttaggagcttatgattctgaaagaaggcgattaagcctgcaatctatagattgcagactgcttatgatggaagcctgtttgcgaagctggtgaaggcgaggagataggagcaaaaccaggcatgattgttgacagctgacgagagcttctgcattgatcctcctaattaagcatctcagattatgtgccactgtgctatgtgaacggctgactgtgtattcttttactccctctctaccaatatacgagacaaagcttttgccctcctttaaaaaaaagagaacaattgagattatgtccttttttttcttttcgagaatacgaggagacgatttgtaccggattttaaagatgagggaggccctatacttggttgtgtgattgatgcttgatgaggttattcaaccagcagatagaaatcagggatgctaaatagacttattcagcaaatatacgcttggatgggttgttatcgtattacaatccgttggaaaaggcccattaccaccgggaaaactacctcggagcccacgcaaaaattacgacagaaatccgacccacactgcgctcctagtcttccactcttcctcgcttcatccgctctgcgcctctacccctctgatacatgtctgggaggtctttacctgtataccattaagggctcgttcggattataggataggaaaaacttaggataggaaatttataggaataggaaaggaatttaagtgtaaaatagaggaatgaaaaacaaaggaatacaaaagttgagagcattcagatcacaggaaattgattgcctaggatttgcatgcagaaagcgaaaaaaaagagctcgaggtggatggattttcctgtacttttcctgtgaaattagcatcaaaggaaactttcctttggatttcctacaaccagttttcatgatccgaatgacaggaaaggaacaaaatcctatatacagtattcctccaaaaatcctgtgaagttcctctaatccgaataagccctaagaaagatggtgcctgcctctgtgccactaaaaagtttgaaccttcctctatgccatcgtcgaactttatcacgccctccacaccattccgtcgctattctgtgtgagtttaaccgtttggcagctctgacatgtgggcccgggcaggaaatgtcgctcttgcccttttagtgtctgcttcgtttcagagagaggccaggcggcgtggcggacaagcagccaagcgcggcattgaggcaagcgaccggtgtggcgggcggcaaccagccgagggacggggtggtgtggcggccaaccgacacgagcagcgaggcagcggatgaggaggtgaagaggcccgtcccggaggagaagtcgaagcccgtcatcgtaagtagggtgctggtgcagacctcgatctacacaaaggaagaggtgaatgccatcctgatccagtgcggccggctcagccggagctcgtcatcgtcggggatgcgcctcgtcgtcgaccgtcgatcccatcgtcgtggcgcaggttggggctgacgctggtaggagggtcgtcgtcggggatgcgccggctcctcgccaccatgggggccgccgaggaggccgcggcgtccgcggccgccgccgccgccgtcctggcgctctttgtcggtggcgcccccgtcggcgggatcgatggtctcatgggcctccacctcagtggccgtctcgtcccgcgcttcaaggaggtaggctagcgcgcgcgctctctctctctcaaccctaagggcaacaaagtcatttggttgcgctgttacccgccgttgggacaaaaacggacggaatggtgtggatggcgcgataaagttcgatgatgacataggagaggctcgaactttttagtagcacggagacaatactatcttttttaatggtatataggtaataaaaacctcccagtctggcagtctcctccgccttgggctcgtgtctccgtgcagcgcgccgcctctccccaccgccgccgcctacacacctccccacaccaatacaccatcatcccgtcgccgccaccatgctccgctagttcgctctggcctaaggctgctcggctcctctcgacatccccgtcgcggcagcctcaactgccctcgccactgtcgaggcggcttcagtccatgccaccgccgtatagacggccttgatctgcaatgttcaaacgaggtctcccgcccccgcctcatctgtgataatggcatcggtgtgatgaccacagaggatggtcgctggtcggcatcggcggcatggctggacagcatcggcggcaagactggaagctgcccacgcccaggatacatggtggcatgctgatctatggctctaagaatgaaattggcagtagctttgatttttggtctgcaattcgatgagatgttcttgattttcgattaccaatgttcttgatttccagatgcttgatattatccacccaaacggtatatacgaggggttcttttactttaccggtaattatgagtaacacaaagttaaacttatatttggattacaagggtataaaggtccctatcctgctagagtgtttgtctgtttgagaagcaaggaaaaacagggctgaaatgaatgatccatatttaccaaggaaatcctcggaagtcatatgcatttgcgtggggacagaaacttagaaaccgttcaccaaacggtggaaaagcagcggcacgtaagaacaacgtggttatggccttttctggcttcctcacacgaacaacctggctcatttgtatttaagccgttgttgttttctcgctgtcacggagcccaatcagtaattgttactctcctcaaacagccagtcaaaatagtaaacctttttccaaccatttaatttcgcgtagccagtcatgcacactatacaaattttacaggtttcctattcagcgagaaaaacccagtcatctgatagacaggttcatcaattgaaacataacaatctgacgagaaatctgtgacagatacagaatgacagcgattctcgccaattgattccattcctaagattaatggatagatgaatggctagattggtgggaggctaccgtaaacatacaagagacacctaagaaggcactccgcactttgatgttgttggtcgcctgggagatatggaacgaaaggaatcgcagaaccttccaacagaatgagctttcagctacctcccttttagccaagaacaagaaagaggccaaaacttgggccttaacaggagcgagaagttttaatagctggctttcttttagttagctcggaccaaaggtcctagctcctttctttttttcttttactttataaagttccccttctctattcaataaaattggcgctcgtccattcgttcaagaaaaaaaattgagcactgtctcgagagtacacggcacgcagcaatgttgtttaagagtgtgggcattatcctcttccaaatcgtggttaaggcctggtgtcaaaaaaaaatcgaggttaaggcagtgtttagttccttcaaactacaaaaaattccgtcaaatcaaatgtttggacatatacatgaagcattaaatgtgaacgaataaaaaactaattgcacagtttgcatgtaaattacgagacgaatcttttaaagcctaattacgtcatgatttgacaatgtaatgctacggtaaatatttactaataatagattaattaggcttaataaattcgtctcgtggtttatagacgaaatctataatttattttgttattagtctacgtttaatacttcaaatatacgtcgatatatatattttggtacacgaagtaaacccggcctaagctggcgagttagggacctgacatatctatcatgttgctcgctatatatagcgcggatatctggacacagaggccacacgccgtcgagactcgagagattcaggaacagaaaccgccgagagagttcgtagcagtcaacgcgcgaggcagggccgagaagaaaccgccggcgacgcacgcgcgatggacgctcggcggaggcggttgtccccggcggtggccgtggcggcggctcttcttttcttccccatgttcttcggtgaggctgcgatttccgtctctttttttttgtttcgttttttcagttttgttttgttgcggcgctgtttgattttgctcgctcgcttctgaatcctgaaagggagccatacgccggcggcggcggcggcgtacggagaggcttcaggcgacgccggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgtctccctctccgagacatacgacggtgagctccccatctcgtttcacttgtgattttatttgtgaactgaacacgatttggtctgttcatgccgtgtcgtccttccgaattttcgcctcattttttatcctcatctcggatgcaccgcagggttacgagcactcggactcgggtctggcctctccagcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacctgtacgcttccctctctctctctttctctcactctggctaaaatgttactatctgaaagtctttatgtttttattactgaatttaaggtgctttattagcctgtaattacttgcagagaattcttgcttgtttacatcactacaatgatatgctgttttgaaagttgtcatcagcgcttaactatctgatcacataattctgtattaggctatcaacttcagaagtattgaaaatctaacccttccttgtacttcaccactactgtcgtaatcaggcctcaattctggataagttcggtatagacagtagggtgtgaattgtgatgtaggcgtgacatattgattaggattagctgctactatccttctttttactgtgatctatagctattttttctctaagattgttagaacgtctttgtacgtatatcgatataagtgatccatttcctatggcatacgaaaagagatgttcaattaatcgttggatcatgttgaattcacgcaggacaatggaacagcaccacgcttatctatctacatagagaacatctacaaggggattcatggaagcgattcaagcgcctatgattctgaaggaaggtaattaagctgcggttgcagactactttctgctttcaccttggctcttcaatttgacccttctcatccaaagatcattcgattcatttcacagactattttcactccggtgtatctatttcagtatgattgctaatatttcaagttttcaggttcgttgctgaaaagtttgaggagatattcgccaagcacgccaagaccgtgcctgatgctctgacatcggacgagatagacgagctgcttcaagcgaaccgcaagcccggtgactacactggatggtagtaattaattttctggctattaccactcaaaatattaatgaactttcatgtgatcttactactgtatatgctgctgttcttgctcgaattgaaatgcagggtcgcagcatcgtcagagtggaagattctgtacaagatcggcaaggacaaggacggccttcttcgcaaggaggccgtgcgagaagtctacgatggaagcctgtttaccaagctggcggcggcaaggataaacgacgaaaaccaagcatgattggtgacagctgatgggatcatctccattgattctcctgattaagcatctcaaatcatgtgccactgtgatatgagaacgattgagatgatgtctgaacacaaaaagatagtcatgcaagatagaagtatgaacaagtgtggacagaatctgcagatggggatggatcgtttagttctgtccttttttgttggtttcttggggatattgaatgtttatattattatacctgcaaatggttggcagtgcaaggctgcaagcaatggcacactatttat</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0734600, RefSeq:Os02g0734600