Os02g0736500

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Revision as of 02:52, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0736500| Description = Nicastrin family protein| Version = NM_001054589.1 GI:115448548 GeneID:4330658| Length = 5925 bp| Definition = Oryz...")
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Gene Name

Os02g0736500

Description

Nicastrin family protein

Version

NM_001054589.1 GI:115448548 GeneID:4330658

Length

5925 bp

Definition

Oryza sativa Japonica Group Os02g0736500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:31637449..31643373

Sequence Coding Region

31637999..31638263,31638803..31639241,31639320..31639404,31639597..31639737,31640170..31640241
,31640551..31640670,31640974..31641045,31641126..31641258,31641430..31641503
,31641617..31641688,31641790..31641867,31641977..31642053,31642129..31642205
,31642328..31642445,31642580..31642693,31643220..31643298

Expression

GEO Profiles:Os02g0736500

Genome Context

<gbrowseImage1> name=NC_008395:31637449..31643373 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:31637449..31643373 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggggcggctccacggcgcccctcctcgcggccttcgcctgcgtcttcctcgccgtcttccctcccgtcgcctccggagatgctgcaacgttggagtcagttccggatcttgtgaaggcaatgtacataaacgttgaaagcttcccttgtgtgaggctgttgaatcactctggtcaagtcggttgttctaatcctgggcatgacaaggttattgcaccgattgtaagatttggaaacagaaatgatcagttggttcagccgtcggcggttcttcttcccttaaatcagatgacagatttctttctgagggtatccaatgatccagaactttatcgtaagatagctggcgtactagttgaggcaaatggcgttgataacatgctagagttttcaccggatagaaaatttccacaacaggcttttgcaccatactcaaatctcagccatcattggaatcccacgggatcaggtattatgtggaacaaatatgactttcctgtgtttcttctctcagaggagagcacacagactctgcaaaaccttgcggacaagaatgagaagagtgccaatggatatctagcaaatgttgcagaatttgacctcgttatgcagacaacaaaagctgggacgcatgattcagagtcctgcctcagagagcagtcatgcttgcctttaggaggacagagtgtatggacttcgttaccaccaatcagcaattcatctacaaagcatcagaaaccaataataatggtcactgcatcccaagactctgcatcattctttcgggaccgtagtcttggtgctgattctcccatctctggattgattgccttgctcactgctgttgatgctctctctcaccttcatgatataagtaatcttaagaaacagcttgtttttgctgttttcaatggtgaagcctggggttatcttggtagccggaaattcttacaggaattagatcaaggggctgactctgttaatggcattagcagcttattgattgaccaggtcttggagattggttccgttggcaaggccataagtcagggatatccactattttatgcgcatgctgcagggaattcgtcaatttcgatgaaaatggtagatgcactccaaagtgccagtgaatcacttggttctgataatgttaaagtaaaaccagcagcttcatcaaatcctggtgttccaccatcttcattaatgtcgttcctaggaaagaattcatcaactcctggacttgtcttggaggattttgattcccaattttctaatagattttaccacagcactttggatggccctgcaaacgtcaattcttcgtcaatagcagctgctgctgctttgattgccagatcattatacattcttgctagcgcagacttgcccattgatctcatcacactgaacactattaaagtgaatgtttcactggtagaagaattgattggatgtctactgaaatgtgatcctggtctttcttgcggaattgtgaagagcttcatttctccaagcaactcatgtccaagtcactatgttggtgtttttcaggatttgcctgctggcacacagtttccttcatatgcagatgatatctctcggtttatatggaactttttggcagacagaacttctagtttggcaggtaacagtagctcttgtactggacagtgccatgatgaaggcgaaatatgtgtaggggcagaagtggaaggtggaggcagatgtgttgtatctacaactagatatgtccctgcctattcaacgcggctgaagtttgaggacaatgtatggcatgttcttccagtaaactcttcagacccttttagtgctgcagatcctgtgtggaccgaaagcttctggaatacaattggcctcagggtgtatgcagtgcaagctacatcttatgattggcttgttcttctgatcgggatcattattacggtggcatcatactttgcagtgatcgttggcagatcatacatttcaaagatcataaagcgggactaa</cdnaseq>

Protein Sequence

<aaseq>MGGGSTAPLLAAFACVFLAVFPPVASGDAATLESVPDLVKAMYI NVESFPCVRLLNHSGQVGCSNPGHDKVIAPIVRFGNRNDQLVQPSAVLLPLNQMTDFF LRVSNDPELYRKIAGVLVEANGVDNMLEFSPDRKFPQQAFAPYSNLSHHWNPTGSGIM WNKYDFPVFLLSEESTQTLQNLADKNEKSANGYLANVAEFDLVMQTTKAGTHDSESCL REQSCLPLGGQSVWTSLPPISNSSTKHQKPIIMVTASQDSASFFRDRSLGADSPISGL IALLTAVDALSHLHDISNLKKQLVFAVFNGEAWGYLGSRKFLQELDQGADSVNGISSL LIDQVLEIGSVGKAISQGYPLFYAHAAGNSSISMKMVDALQSASESLGSDNVKVKPAA SSNPGVPPSSLMSFLGKNSSTPGLVLEDFDSQFSNRFYHSTLDGPANVNSSSIAAAAA LIARSLYILASADLPIDLITLNTIKVNVSLVEELIGCLLKCDPGLSCGIVKSFISPSN SCPSHYVGVFQDLPAGTQFPSYADDISRFIWNFLADRTSSLAGNSSSCTGQCHDEGEI CVGAEVEGGGRCVVSTTRYVPAYSTRLKFEDNVWHVLPVNSSDPFSAADPVWTESFWN TIGLRVYAVQATSYDWLVLLIGIIITVASYFAVIVGRSYISKIIKRD</aaseq>

Gene Sequence

<dnaseqindica>5111..5375#4133..4571#3970..4054#3637..3777#3133..3204#2704..2823#2329..2400#2116..2248#1871..1944#1686..1757#1507..1584#1321..1397#1169..1245#929..1046#681..794#76..154#gcggccgtcgacgagacacgagaaaggcgacgaccactgcctcctccactcctccagatcgccgccgccgccgccatggggggcggctccacggcgcccctcctcgcggccttcgcctgcgtcttcctcgccgtcttccctcccgtcgcctccggtgagttggtcctctactgaccatcgccgagtctatatcgctttgtttgctctggactctggggtgtaacaaattctaccgaatcgagatggtctcatgcttcgttgggtatcttctgttatgtgatgcgtttctagggtgaaattgtgtagggggtaggtctcagcgtagccttgaggtgaattaggtagtggactgctaaacctagttagttctgaagcttgggcgaacacctccgttgttgtgctgataggcctctagttgtgctcatggagctttgacatgcgactataattttttttctagtatctcattctaggaagttttgtgattgctaaagtattgtgatgtcttaggtgtaggtttgtttaggttcatttgaattataaaatcgtgatactgcttactgtcttaatatatttatatatgggacacaggtttgcaaagcaacgtaagatatcccaacttatgactgctgtaacattgatgtaccataacttaaggatcctcttacctttctttttaggagatgctgcaacgttggagtcagttccggatcttgtgaaggcaatgtacataaacgttgaaagcttcccttgtgtgaggctgttgaatcactctggtcaagtcggttgttctagtgagtattcggtttactcttattctgtatgcttaaattaagatggctgtcattttctatcatcattgtcaaaggctagccaactctgccttgttaagagtacatggttattggggtctccattatgtaatcagatcctgggcatgacaaggttattgcaccgattgtaagatttggaaacagaaatgatcagttggttcagccgtcggcggttcttcttcccttaaatcagatgacagatttctttctgaggtataattgcttagatagtctaaatctcacaaatgatgttacatatgatcgtctttcaaagttatgtttccttgaggtgctaagagatgagaatatttgctacattgtttgctcttgtgcagggtatccaatgatccagaactttatcgtaagatagctggcgtactagttgaggcaaatggcgttgataacatgctaggtttgtggatttgttttttttatgtattttattgccttttaattccaaaaataatgtactgttctgactttgtagagttttcaccggatagaaaatttccacaacaggcttttgcaccatactcaaatctcagccatcattggaatcccacggtaagttatgcggttgattaaaatggtaccaccctgttgagagacaaacgtgatcagctgatcacatgcattgaatatcactctgttaccctgacatttacttttgtagggatcaggtattatgtggaacaaatatgactttcctgtgtttcttctctcagaggagagcacacagactctgcaaaacgtattctgcctgctcttatatatttattatagttctcatttcttctttacaaactccagctacacaatgcaatgactctaaaaagagattatcaataacagcttgcggacaagaatgagaagagtgccaatggatatctagcaaatgttgcagaatttgacctcgttatgcaggttttgatttttcacatgaaatgttctccctatgtttcttgcacatctttatctgtatgttttgatcgcatggataatggattatgtttctcctaattgacatgaacttttagacaacaaaagctgggacgcatgattcagagtcctgcctcagagagcagtcatgcttgcctttaggaggacagaggtgaccactttttttttcttgcataggcatttgcacctctgttttggaaagttatggatatatttaagttccacaatgtgttgtggtagttgctaccttgccaactgagtattatcgtcttctgttagctagtttttgtttcaacttttggttctcatgtttgaagggcagtgtatggacttcgttaccaccaatcagcaattcatctacaaagcatcagaaaccaataataatggtcactgcatcccaagactctgcatcattctttcgggaccgtagtcttggtgctgattctcccatctctgtaagttcctactaatttgtgggtatgataactgcatcttacattatagttctatgaaataactatggagttatgcacagggattgattgccttgctcactgctgttgatgctctctctcaccttcatgatataagtaatcttaagaaacaggtaagattattactactagaaattattctgtaagttgtgtgcatgttattgcattgggttcttttgcatctgtcatctgctagagcagtgttgcaggtctactctagctactttgtgtttcttttgtgaattatgatactcattttgaacttgcagcccttgacatctcaatcattgtcctttatctaagcatggcgtggtagatttaatatggctattcatatctggtttagtatggatttgtggtgattgattcctaaattgttgtgttcttattctcacatcataccacatgatatgcagcttgtttttgctgttttcaatggtgaagcctggggttatcttggtagccggaaattcttacaggaattagatcaaggggctgactctgttaatggcattagcagcttattgattgaccaggtgagtgcttgataggataacgcttgcaattgcagcactaaatcatttgcaaatgctttcaaacatatagttttccttggatgtcccttgcttcagggtattgtccttctgcagttttttaggttgtggacttaatgaatttaaacctgtgaaatttaccatatagtcctgagtcttcaggcgatacatatatctgtctctacacagttccataacctaattatatgattatttaggcaagtatctgtctacattgttccataacttaattatatgattatttaagcaagtgctttggacacgattcaggtcttggagattggttccgttggcaaggccataagtcagggatatccactattttatgcgcatgctgcaggggtaagccttttttgtggttatttcccctgcctgttcttggtgaatgtaattgcttattcaaaatgttttttttttcagttcctgttagtgtcatagtggttgataccccactctgtacaggctattttagttattggagatggataaacagaaagaatttaggcacagtagatgggggcctgtggacatccatatgtatagtttaggtttcagtgttgcatcagaatattcctttttgtcgaatatctcagtgaactattttttatcatgactttatatgaagatattttattctggagagatttatcaaaatatttgttctcaaattcttgagtaaagcacactgggtgtccaaaaaatagctgtacattggaatttaaaacaccataggcattgttccatattgttcatatttatcttctgctttgacagaattcgtcaatttcgatgaaaatggtagatgcactccaaagtgccagtgaatcacttggttctgataatgttaaagtaaaaccagcagcttcatcaaatcctggtgttccaccatcttcattaatgtcgttcctaggaaaggtaaaacctcaaatatccataaacataaccatttgcttgatagtattgcactcaatatgcaacacattaatttagtgatgttccatctttttttttcttttttcattagaaacattgatttttccaaacaaatatttctctttgaaatctgagtgccatgacctgttcactgttaacccatcaataatgcagaattcatcaactcctggacttgtcttggaggattttgattcccaattttctaatagattttaccacagcactttggatggccctggtaagttcaccatgcagagatctgatgatttcttttgtagaaacccaggattaaacctgtaatgtcttttttttacagcaaacgtcaattcttcgtcaatagcagctgctgctgctttgattgccagatcattatacattcttgctagcgcagacttgcccattgatctcatcacactgaacactattaaagtgaatgtttcactggtagaagaattgattggatgtctactgaaatgtgatcctggtctttcttgcggaattgtgaagagcttcatttctccaagcaactcatgtccaagtcactatgttggtgtttttcaggatttgcctgctggcacacagtttccttcatatgcagatgatatctctcggtttatatggaactttttggcagacagaacttctagtttggcaggtaacagtagctcttgtactggacagtgccatgatgaaggcgaaatatgtgtaggggcagaagtggaaggtggaggcagatgtgttgtatctacaactaggtatcttcttttcttgagacgcatactcccttctagaactaggtaacatttttctatgggcccttttagaacgttgaaatcaaatccctactgtgcgttacttatttgggtgacaggcattagcggtttaattatgaactaggcaattataagtgtatgcttagggatgcaagtgggcaatccctctactcatataaaaacccgcttaatagttcattttcttgcttctagtacaaaatttggaagaaaaaattaactagaattgtgataagggcacacttgcatccctatgtatgctggagcatccataatccagttagtttttgtatatagaaagaaataaaatttgctgacactaaagtaattttgactcgcactcttttttgtgttgattaactaacatgtactggtgttgattaactaacatgtactgaattttgttatcatgcttgtatttttgtggtgattggttgctgttgtactctctatttctacttggagatttactgattgctttattaactttcttgacaacttagatatgtccctgcctattcaacgcggctgaagtttgaggacaatgtatggcatgttcttccagtaaactcttcagacccttttagtgctgcagatcctgtgtggaccgaaagcttctggaatacaattggcctcagggtgtatgcagtgcaagctacatcttatgattggcttgttcttctgatcgggatcattattacggtggcatcatactttgcagtgatcgttggcagatcatacatttcaaagatcataaagcgggactaaaacatcatccattccctccattatttctgagaccttggtccatcagatcctaccaccaaagccatctctgtaaggtgctctgggaattttgagagttggaacagaactaatagtctaacacatgaattaagtcggcaaatcttagatgcaatgtggcacatggcgatagggagaggatttgtaaaactacaaaagccatgtggagccttccagctagaaggagatgtgatcctactacatgatacatgacaccgacctacaggctgttgtgatttgtactgatgtttctggatctgcttggctgattggctctgcattggtaggtataggtagatggatgatgcccctctgggaggatgtatgctgtggattagtgctggttatgcacgtatcatctttgagttttggctgtgtacgtctctccagtcctattttcctactgtgttgggaccagttgagtattgtgctggtttacggaaccttatcgatatcatgtcaagaactgtccctatacaattttaaataactgaaaagctcagattcgccatgt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0736500, RefSeq:Os02g0736500