Os02g0743500

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Revision as of 02:53, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0743500| Description = Similar to EDR1| Version = NM_001054631.2 GI:297599910 GeneID:4330701| Length = 8105 bp| Definition = Oryza sativa ...")
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Gene Name

Os02g0743500

Description

Similar to EDR1

Version

NM_001054631.2 GI:297599910 GeneID:4330701

Length

8105 bp

Definition

Oryza sativa Japonica Group Os02g0743500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:32058836..32066940

Sequence Coding Region

32059354..32059602,32060322..32060762,32061067..32061170,32061368..32062752,32062876..32062916
,32063433..32063501,32063703..32063803,32064115..32064193,32064307..32064405
,32064487..32064555,32065977..32066026,32066117..32066293,32066413..32066524

Expression

GEO Profiles:Os02g0743500

Genome Context

<gbrowseImage1> name=NC_008395:32058836..32066940 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:32058836..32066940 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggcggtcgcaggaggaggacgaggtggaggagcgagtgataagggagtcgtcggaggcggaggagaggaagcgggtcagggagaaggaggacgacgaccttgaggagttccagctgcagcttgtgcttgagatgagcgcgcgggacaatcctgaagagatggagattgaagttgccaagcagatcagcctgggcttctgcccgcctcagagctctactgcagaggccctcgcggcccgatactggaatttcaacgcccttggctatgatgacagaatatcagatgggttttatgatctctatgtgactgggaatggcccggcttcaataaccatgccctctcttaaagatttgcgagcgcagtcactatcacatagggtcaactgggaagctgtattggtacacagaggtgaagatcctgagcttatgaaacttgaccagacggctctaatcatgagccttgaactccgtgaatctaaaccttcagaatttgttggaaatgatttggttcagaaacttgctggcctagtagccagacacatgggtggaactttttttgattctgagggcatgttggtgaaataccagaaaatgatgagatacctgagaaccagtattggaagtgtagttgttcctcttggccaattaaaaattggtctggcacgtcatcgtgcactgctatttaaggttttggccgataacattggtatcccctgtcgactcctgaaaggaaggcagtacactggatcggacgatggggctttgaatattgtgaaatttgatgatggaagggagttcattgttgatcttgtcgcagatcctggtacacttattccttcagatggtgctgttttgtctacagaatttgaagaaagttccttctcaaataatcatcattttaacaaagataatgacatcaggcagttgggatcttcaaatagtttatcgaattctgcatgtagttcttttgagtgtgagttacttgacagaagatctacatggatcaacgttggtccttctgatagtgatggagctacaacgagccagacaagtaaaaacaatcaacaaaatacactatcagattcattcgggattttatctgttagcacattcactagtgaaaataggcctattacaaatgaatcaagaagtacagacgacattgctgccgcaaagaacaaagaaagatcaagtgtaacaattaattcttcgtcaacttcaccttcaccttcttccccagaagtaggcagtactccagctgtccggaggatgaaagtaaaggatatttcggagtacatgattaatgctgccaaagagaatccacaactagctcagaagatccatgaggttttacttgaaaatggagttgtagcaccacctgacttgttttcagaagattccatggaagagccaaaggacctcatcgtgtatgacaccaccctttttcaaagcaaggatgaaatgaaaaagaggatgaatgaacttgggtcgagggaatatgctgatcgtggtcatggtccattattgcctcatcatcctggacatgaactcccatcaaaagttcctcaccgggcacctctagactcacttaagccagttgagggtttgggcattgaccacccccctgacatccaagataacacatcttttatttctcagtatgaaccttctgcacctccccaggaagcttcatcgcagcttacaaagcaattgcctgttacggctgctgctgttgcaactgctgcagtggttgcgtcttcaatggttgttgctgctgctaaatcaaacaatgatgtgaactttgacgtgcctgttgcagctgctgcaacagtcactgcagctgcagttgttgccacaactgctgctgttagcaagcaatatgaacacttggagcctggtaatcagctgcatagtttaccaagtccctccgaagggaatgaatcaatcgagaaaagtgcagatgagttttgggataaacagaattttgaaattgatcatggtcaagataatactttggatcaagaaaaagattcagctgaagttcgccaggatgctgaaagaacctcagataagtcaagcggaacagagagtgcaaaatctgaaatcactctggatgatgttgcggagtttgaaatccaatgggaagaaattactattggggaacgcattggtcttggatcatttggagaagtttatagaggagagtggcatggaacagaagttgctgtaaagaagtttctgcaacaagatatttcaagtgatgctctggaagaatttagaactgaggtgcgaataatcaagaggttgcggcatccgaatgttgttctcttcatgggtgctattactcgtgtacccaatctttctattgtcaccgaatttcttccaagaggtagcttatttcggttaattcatcgtcccaacaaccagttggatgaaagaaagcgcttaagaatggcacttgatgtggcacgtggtatgaattatctacataactgcacaccggtgatagtccatcgagatctgaagtctccaaacctactggttgacaagaattgggttgtgaaggtttgcgactttggtttatctaaaatgaagaacaagaccttcttgtcatcaagatcaacagctggaacagcggagtggatggcacctgaagtacttcgtaatgaaccatcagacgagaaatgcgatgtttttagctatggggtcatactgtgggaactttgtacattactgcaaccttgggaaggcatgaacgccatgcaagtcgtcggagctgttgggtttcagaatcgtcgccttgatattccagataacactgatcccgccattgcagaaataatagcaaaatgctggcagacggacccaaaattgcggccatcatttgcagatatcatggcctcattgaaaccactgctgaaaaacatgaccgctcaagcgccaaggcagagagtacaacaaaccgacgagtaa</cdnaseq>

Protein Sequence

<aaseq>MRRSQEEDEVEERVIRESSEAEERKRVREKEDDDLEEFQLQLVL EMSARDNPEEMEIEVAKQISLGFCPPQSSTAEALAARYWNFNALGYDDRISDGFYDLY VTGNGPASITMPSLKDLRAQSLSHRVNWEAVLVHRGEDPELMKLDQTALIMSLELRES KPSEFVGNDLVQKLAGLVARHMGGTFFDSEGMLVKYQKMMRYLRTSIGSVVVPLGQLK IGLARHRALLFKVLADNIGIPCRLLKGRQYTGSDDGALNIVKFDDGREFIVDLVADPG TLIPSDGAVLSTEFEESSFSNNHHFNKDNDIRQLGSSNSLSNSACSSFECELLDRRST WINVGPSDSDGATTSQTSKNNQQNTLSDSFGILSVSTFTSENRPITNESRSTDDIAAA KNKERSSVTINSSSTSPSPSSPEVGSTPAVRRMKVKDISEYMINAAKENPQLAQKIHE VLLENGVVAPPDLFSEDSMEEPKDLIVYDTTLFQSKDEMKKRMNELGSREYADRGHGP LLPHHPGHELPSKVPHRAPLDSLKPVEGLGIDHPPDIQDNTSFISQYEPSAPPQEASS QLTKQLPVTAAAVATAAVVASSMVVAAAKSNNDVNFDVPVAAAATVTAAAVVATTAAV SKQYEHLEPGNQLHSLPSPSEGNESIEKSADEFWDKQNFEIDHGQDNTLDQEKDSAEV RQDAERTSDKSSGTESAKSEITLDDVAEFEIQWEEITIGERIGLGSFGEVYRGEWHGT EVAVKKFLQQDISSDALEEFRTEVRIIKRLRHPNVVLFMGAITRVPNLSIVTEFLPRG SLFRLIHRPNNQLDERKRLRMALDVARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVK VCDFGLSKMKNKTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVFSYGVILWELCTLLQ PWEGMNAMQVVGAVGFQNRRLDIPDNTDPAIAEIIAKCWQTDPKLRPSFADIMASLKP LLKNMTAQAPRQRVQQTDE</aaseq>

Gene Sequence

<dnaseqindica>519..767#1487..1927#2232..2335#2533..3917#4041..4081#4598..4666#4868..4968#5280..5358#5472..5570#5652..5720#7142..7191#7282..7458#7578..7689#tgagtcaatacctgcctaaagttgagttaccccttccgcctcagcgtcagtggccatgtcggatccacccacccaccaccagcaacagtgggcaataggccaatagctgctgctgcgacggcgacctcggcggcggcggcggcggcggtggcgacggcatgaagaacttcttcaggaagctccacatcggggaggggtcgggcgacggcgcctcctcgtctccccctccaccgccctcctcgaggaaggggagcggcggggtggggggtaatcatcacctgcacgccgagcagaggcagccatcggcgtcggcggtgtcgagctggcttgattccgtcccaggtcggcctcagccccctacgccgtcgacgccgtcggaggcggaggggtcgccgttctcgtcgtcggtagggtcgggggcggaggagaggaggcaatccgtggcggctgagaggaggagatcgcaggaggaggagtgggagaggaggcggtcgcaggaggaagaggccgtgagggagatgaggcggtcgcaggaggaggacgaggtggaggagcgagtgataagggagtcgtcggaggcggaggagaggaagcgggtcagggagaaggaggacgacgaccttgaggagttccagctgcagcttgtgcttgagatgagcgcgcgggacaatcctgaagagatggagattgaagttgccaagcagatcagcctgggcttctgcccgcctcagagctctactgcagaggccctcgcggcccgatactgggttagccactctgattcatttccatcgctaattagctgtttccatggtgcaattctgatagtggaatagactccatgctgtgaaaccggttgactttacatctttgactggctgggcagtgattcagtgctggagttcatagctagtgcaattgcatcgattgggtgatttttggggttggtagcacgagcttagttgtactttctgtggtacattacattacatacaatgatcttctgcagtctgactgcctaattgctgaaacctagtgtctgtctgtcagataagttaaactttcttatcttgtgactaacatcacccccagtataattttcactgcttgtgtgggttctggagtatgattctagtatatcctttataagattgggccttacttttttgaagtaattgttatttgataatacaaagaaacacagctctattgtgtttttgaggaaaaaaaactaaatgttatttgttgctattcagcaatgcattgtggccatatgtaaaagaggcctgttcagtaatgaattgtagccatacgtaaaagagaccatacattggtatgaatcgcacatttaatcaacatttttaaatagatgaagcattcctcatgtttctactcaacacactccaaagttctgtacattccttttttcttaacatggtccattttctggtgtctctcatatgatagaattgtttatgcctcacagaatttcaacgcccttggctatgatgacagaatatcagatgggttttatgatctctatgtgactgggaatggcccggcttcaataaccatgccctctcttaaagatttgcgagcgcagtcactatcacatagggtcaactgggaagctgtattggtacacagaggtgaagatcctgagcttatgaaacttgaccagacggctctaatcatgagccttgaactccgtgaatctaaaccttcagaatttgttggaaatgatttggttcagaaacttgctggcctagtagccagacacatgggtggaactttttttgattctgagggcatgttggtgaaataccagaaaatgatgagatacctgagaaccagtattggaagtgtagttgttcctcttggccaattaaaaattggtctggcacgtcatcgtgcactgctatttaaggttagttacttaataagacatattaagtatttaagattagtgtggctaatctccaagctatctttgttgctctagtcctgaactttattgacaacgagaatttgcccaacatggacactgaacattgaatgccatctgttataatgctttctatatttttctctacttcaaattcagtgtataagttctatacattttctctttgccctaatacaatagaagggtgacccaattaccattataagacacattacacacaaatctatctatgatagcaattacttttcttaatggttacatgtaggttttggccgataacattggtatcccctgtcgactcctgaaaggaaggcagtacactggatcggacgatggggctttgaatattgtgaaatttgatgatggaaggtattgcatcctttacaacatgaacaggattgtgttggacaaataaacatgagatagcacaagtgtgttctgtcctgatagtattggactttctatcttcatgcattcacttttaagtgttggtgcactgaggattgaaagatgtaataagaacacatttcacttcataaccatctaaaccgtgctgcattttgcagggagttcattgttgatcttgtcgcagatcctggtacacttattccttcagatggtgctgttttgtctacagaatttgaagaaagttccttctcaaataatcatcattttaacaaagataatgacatcaggcagttgggatcttcaaatagtttatcgaattctgcatgtagttcttttgagtgtgagttacttgacagaagatctacatggatcaacgttggtccttctgatagtgatggagctacaacgagccagacaagtaaaaacaatcaacaaaatacactatcagattcattcgggattttatctgttagcacattcactagtgaaaataggcctattacaaatgaatcaagaagtacagacgacattgctgccgcaaagaacaaagaaagatcaagtgtaacaattaattcttcgtcaacttcaccttcaccttcttccccagaagtaggcagtactccagctgtccggaggatgaaagtaaaggatatttcggagtacatgattaatgctgccaaagagaatccacaactagctcagaagatccatgaggttttacttgaaaatggagttgtagcaccacctgacttgttttcagaagattccatggaagagccaaaggacctcatcgtgtatgacaccaccctttttcaaagcaaggatgaaatgaaaaagaggatgaatgaacttgggtcgagggaatatgctgatcgtggtcatggtccattattgcctcatcatcctggacatgaactcccatcaaaagttcctcaccgggcacctctagactcacttaagccagttgagggtttgggcattgaccacccccctgacatccaagataacacatcttttatttctcagtatgaaccttctgcacctccccaggaagcttcatcgcagcttacaaagcaattgcctgttacggctgctgctgttgcaactgctgcagtggttgcgtcttcaatggttgttgctgctgctaaatcaaacaatgatgtgaactttgacgtgcctgttgcagctgctgcaacagtcactgcagctgcagttgttgccacaactgctgctgttagcaagcaatatgaacacttggagcctggtaatcagctgcatagtttaccaagtccctccgaagggaatgaatcaatcgagaaaagtgcagatgagttttgggataaacagaattttgaaattgatcatggtcaagataatactttggatcaagaaaaagattcagctgaagttcgccaggatgctgaaagaacctcagataagtcaagcggaacagagagtgcaaaatctgaaatcactctggatgatgttgcggagtttgaaatccaatgggaagaaattactattggggaacgcattggtcttggtaaatttctttcaatttattcaaacagttgttttcttagtcatgctactgttccgttgactgtctgtaaaatcttattgtggttttctttctcttaaattgatccaaccttctgtgctccaggatcatttggagaagtttatagaggagagtggcatggaacagtaagtgtttcagtaaaaatatgctctcttacattttaatttgtcaacaagttccatgttattatctgaatgcaatcggcacatttgttaactgtttgatctctcgaggatgaaagatgtgaattattgttcactgagataacatacataatgttcatgccactgtcaactattgtaccgaatagaataactccctacttttttttctaaaaaacttgattatattttataatgaaaaggttcagctttaaagataatacattgagaaaccactatagccatttgattagttttctgttgcccagtcttgtatcaaaatgttttcacctggaaagctacgtatgatttcttcgcaacagacttcaatattttgtgaaaaaagtgttttaatatgtctaatttttgtattcagctgttttcattagtttgaagacccatcttttgttatgcaccatcttcttgaaagttctagcaaatcttatgtttaacagtgtatcaaaatcgctttgtttataggaagttgctgtaaagaagtttctgcaacaagatatttcaagtgatgctctggaagaatttagaactgaggtataccatatactccataatttagttcaaatgaccaaatagtctgaagtacagatgttttggcttcttgcctgtgttcatatgtttgtgtgcatgctcatgtgttttattgtgcatgtttgcacttgcagcatgtttgcatattaacctcatgcacacaccatatgagccttatagtaatgtattacttttcatgtttaggtgcgaataatcaagaggttgcggcatccgaatgttgttctcttcatgggtgctattactcgtgtacccaatctttctattgtcaccgaatttcttccaaggtatgtcttgttgttattggtgtaaatttttacatcacatttatgtttatttcatgtaggaaataggaacttaggatcatatactagttaatgttttgttcagaatttgatgcgttaaaaagataaacttcctgttttgtaattcgagctgactcagttgacctgtgtcatagtatcagacatattttggaacattcacctgcaaccccttaaagaacagtgcattaattgtggggatagttgctcactttttttaggaactctatattattaatcattcttgcccctttttttttctattggtcttgcagaggtagcttatttcggttaattcatcgtcccaacaaccagttggatgaaagaaagcgcttaagaatggcacttgatgtggtatgcatgatttgtgactctaaatctcaacttattgttaacacagttgctgataactgataagtgtggagaagccaaatattgtttactaagattccttgaatggtccctaggcacgtggtatgaattatctacataactgcacaccggtgatagtccatcgagatctgaagtctccaaacctactggttgacaagaattgggttgtgaaggtaatacacaagttgcacgatagcaatgaaattcattttccttcaatttctgttgcaaaccacttacgtttttgcaactaggtttgcgactttggtttatctaaaatgaagaacaagaccttcttgtcatcaagatcaacagctggaacagtaagctcgaacgatttcagaaattttattataactttatttgagcaccaatcctgtgcacatttaaaatggtaattgttgcgatgttgtgcaattttagggagattaagaagtacttccgtctgcatgattaaatttgtttgaagtgttttaagttctacaacacttaattatttgtgcattgttatgaaaataacatactttatgctttgcaattgtgtgcatctcttcagaaatgtcaagcggcaagagcctgggttgtctgctttttcagctctcatattgggagagttttataccagatgatatattactcttgtgcatagtattttccctcttcattatgctatgtgcatataacaagggattgaaatattttgaagtataatccattgtgatccatgtatataaaaaaagattggaatgaaggaataactccaattatcctagtctggaaggaagatcgatgatgatagtgatgaatcaaaggggctcaaaatatattttggactttacagcaatgttcctactctctgtggaaattttttgtgttatgcccataagcccatttgttctttgaggattttatatgattgatactcaaatcatcttttcaataagaccaccccacaaatgaccagctgaaaggccatattaccatgtagtggatacgcagtgttcactgaaagccttttgtgacataaagtttgtgcctgaatcacactttttttttgttcttctggtttcgcctgattttctatggtcaatttatgttaaggcaatgtgtagtttggcttggtttcatacaataagatccttgattgcactaaatactatgctatctaattagatactccctccatctacttttgatagtcatatttccaaatctgaaaaatttatttttaataggcatatttcaatccaacaaactatcatcttaataattttctcgaatttaatgcgtgactctccattcttcacacatgattggctacatgggcatcgagaaatgtaaatattaatgaatcgcttgtttacgaggaatgactggtactagcatatttaaatggatgataagtagaattacttatacttggtctgtgtgtcaagatgaaatatgattatcaaaagtagatagagggagtactaagcattaaagactatgctgacaaacaatatatagacctctaaaagcttataagctttataagcaattctccagtccaccgtcctcgggtttatctgtgcaagatttcatagctagctggattgtttagagtagtttgtgacatgatttaagggtgtcaggacttcttgtgaactatggaatgagatttatgctatgtatgggtatcatctttgtgctatgctattgactgttaacattgttggcactgaatatttatgttggtgtgcaggcggagtggatggcacctgaagtacttcgtaatgaaccatcagacgagaagtaagttctaaattctaaaaactaagctctcagatgtattcgtaccttaaatgagtttgtgattgcttaaatggctgtgcatattggcagatgcgatgtttttagctatggggtcatactgtgggaactttgtacattactgcaaccttgggaaggcatgaacgccatgcaagtcgtcggagctgttgggtttcagaatcgtcgccttgatattccagataacactgatcccgccattgcagaaataatagcaaaatgctggcagacgttagtgtgcctaactcactttgtcgctcatctgcattcttccggacgcactaaaacctgcattccattttcggaatacacaaccattttctcagtgttgcttcctgtatttggtgtagggacccaaaattgcggccatcatttgcagatatcatggcctcattgaaaccactgctgaaaaacatgaccgctcaagcgccaaggcagagagtacaacaaaccgacgagtaagaaaaaagaggatgttaccagctgcccgaaggcctaagtatagcatttttttttgttttttgtatagtaacaccaattgtgtgttcgagattggaaagcgtgatgatgttagtgtgctgggtatccatctgtgaagaccagcgctgccaaacccgtccacgatggaggaaaattgaacagcggcaagaaactgtgcaaacgcgaatcaaatgtttagcacagttcttccccaaaaacaccagtctcaggaaatcacatggcgggcggaagttacacatgcttttttcataccatctctcttttcctttatctcgtgttctccaccaaatggtggtatttgtgtaatatggcaagaaaaagaaaaaaaaatgatttgctgtccatcaagaaaatgaaaaaggagaaaacggttgttc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0743500, RefSeq:Os02g0743500