Os02g0782100

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Revision as of 02:57, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0782100| Description = Chorismate synthase family protein| Version = NM_001054849.1 GI:115449068 GeneID:4330930| Length = 6805 bp| Definit...")
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Gene Name

Os02g0782100

Description

Chorismate synthase family protein

Version

NM_001054849.1 GI:115449068 GeneID:4330930

Length

6805 bp

Definition

Oryza sativa Japonica Group Os02g0782100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:34034162..34040966

Sequence Coding Region

34034942..34035251,34035356..34035610,34035883..34035974,34036113..34036310,34036417..34036608
,34036709..34036930,34037226..34037392,34037485..34037578,34037676..34037732
,34037827..34037955,34038049..34038120,34038548..34038661,34038787..34038948
,34039034..34039162,34039425..34039526,34039634..34039710,34039838..34039960
,34040034..34040595

Expression

GEO Profiles:Os02g0782100

Genome Context

<gbrowseImage1> name=NC_008395:34034162..34040966 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:34034162..34040966 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcatcaaaaccttccaataccatcataaaatattttaaagctctgttggatctgcaccaaccaatcttgacacggagcatattggagattctgcatgctgttggcgacagtccaactgtacagcttaaatctgacgtgctactggatatagtatgctctttggggctatctgtctctgttgaaagaaaatcaggggatgaaatggcttcaattgcaaggcttctaaatgttgctactagaaaaatttataatcagaataagaacatatgtgttgtaaagcttccactagtatttacttcacttggagatatattggcaagtgaatttgaagaagcaagattttctgctgtggaggctttcaaaagtttaatagaagactgcatcgatgaaagcatgatcttacagggaattacccagattaagtctagacatccagggataagatctgatcccacaaccatagagaagatatgtgctatcctagagggcttgctaaatgtccggtacggtgatgtctgggacaaatcatttcatgtgatttcaatggcatttgacaaattgggagaatcgtcagctgaccttttgcctgaagcacttaagaacttggcagacatgcaaaacttgtcagacgatgacttctctttccggaagcagcttgattcatgtcttggttcagctgttgctgctatgggaccaaagaacgttcttaaaatcctgcagattcattcaatatctgatgaaaatgaatggatcttccccattttagaaaagcacattgttggtgccagtttacaatttttcttaacagatattcgggacattattagagctgtagagaagaacattccaaagcttttaaaggaagataagcttttctccgccaagagagcagaaggttatgtgtattcactatggtctttgttaccatcgtgctgcaattatgcacgtgatacctcaatccactttagagctctgcagaatgttttgtgcgacacgcttaaaaaccagcttgacttgcgtggtatcatttgttctagtattcaggttttgattaaacaaaacaaggaagcattgtcagttcctgttgaagaggccatacttgctgaggatgaaataagcaaatctgaaagaagagcaaaagaacgctatacgaaagagtttgcagaggaaaacttaaaagcaatacgggctttctcttcaaagtttttggaagttctatgttctatattcttagcttcttcaaatgatgctattggacttctacagcctgcaataagtgatatagcttccatatcagagaaagacactgttggcaggttctttcttgatgcaataaggaagttgttggatgccacaaaagctgttaatgcagaacaaaagaatgatagttcaatgcaaatcgaagctaattccaacacaaataacatggcaagggctctcctgttggactttgcagcttcattaatgcctggtttagctgcaaaatcgatcaatgtgctattcagttatgtaaaacctgcaattaaggatactgactcattgattcaaaagagagcatacaaggtcctttcaatgctgctcaaggatactgagtttattgagcggaatttggataccttgttgggcttgatgatttcttctttgccatgccaatttccatcaaagcgctacaggcttgaatgcctgcatcaccttattgtttacattttgaaggattcatctaagcttggaaagagggaaattattggttcattcctgactgaaatacttcttgccttaaaggaggctaacaagaagacaagaaacagagcttatgatctacttattgaaattggacgtgcttgtgaagatgcagaaaatgacgggaggaaggagaatttgcaccagttctttggcatggttgctggtggtcttgctggtcaaactccatatgcgattagtgcttctgtaactgggttagctcggttaacttatgagttctctgagcttattggagtagcatacaagctcctcccatcaacttttcttctcatgcagaggaacaaccgagagattgtcaaagccaacttaggttttatcaaagctttggtggctaaatctaaagccgatgtattgcacgagcatttgaaaggagttgtcgagggtttgctgagctggcaaactgatacaaagaattccttcaaagcgaagataaagtcactgatggaaattctagtgaaaaaatgtggtttggatgctgtgaaggctgtgatgcctgaagaacatataaaattgctgaccaacattaggaagattaatgagcgaaaaatgcggaaatctaaatcttctgaggatggggataacatgtcgatgacctcacgagctacaagacaaagtagatggaatcacacacagatgttttctgattttggaagtgatgaggatgactccaatggtcccttttctgcccaacatacagttgcttctcgtactggaacaaaagcttcaacacggtcgaccaggaagcgccaagcagataagagcttgctagagaagttcattgatcagtcaactggcgagcccctagatttacttgaccagaaaacagtgcggttggctctcaaatcgacgaaaaagagggctatgcctgatgaagatgatgatgaggtggagatggaccctgaagggcgtatcattgtgcgggaagagcgggagaggcgcaaaaagaagcagcctatctcccgagacgacgaggccgacgacaggagcatggtccgaagccagtccgtcaagaggaggaagacgaccagctccggctgggcctacactggccatgactacaccagcaagaaggccagtggcgatctcaagaagaaagacaagatggatccgtatgcctactggccattagacaggaagcttctgaaccgcaggtcggaccgcaaagcggcggcacgcaagggcatgagcagtgtcatgaaggtgaccaagaagctcgaagggaagagcgccgccagcgcgctcgctgctaagagaacgcaaacaaaaaaccggaagcagaagaagagcaagtaa</cdnaseq>

Protein Sequence

<aaseq>MSSKPSNTIIKYFKALLDLHQPILTRSILEILHAVGDSPTVQLK SDVLLDIVCSLGLSVSVERKSGDEMASIARLLNVATRKIYNQNKNICVVKLPLVFTSL GDILASEFEEARFSAVEAFKSLIEDCIDESMILQGITQIKSRHPGIRSDPTTIEKICA ILEGLLNVRYGDVWDKSFHVISMAFDKLGESSADLLPEALKNLADMQNLSDDDFSFRK QLDSCLGSAVAAMGPKNVLKILQIHSISDENEWIFPILEKHIVGASLQFFLTDIRDII RAVEKNIPKLLKEDKLFSAKRAEGYVYSLWSLLPSCCNYARDTSIHFRALQNVLCDTL KNQLDLRGIICSSIQVLIKQNKEALSVPVEEAILAEDEISKSERRAKERYTKEFAEEN LKAIRAFSSKFLEVLCSIFLASSNDAIGLLQPAISDIASISEKDTVGRFFLDAIRKLL DATKAVNAEQKNDSSMQIEANSNTNNMARALLLDFAASLMPGLAAKSINVLFSYVKPA IKDTDSLIQKRAYKVLSMLLKDTEFIERNLDTLLGLMISSLPCQFPSKRYRLECLHHL IVYILKDSSKLGKREIIGSFLTEILLALKEANKKTRNRAYDLLIEIGRACEDAENDGR KENLHQFFGMVAGGLAGQTPYAISASVTGLARLTYEFSELIGVAYKLLPSTFLLMQRN NREIVKANLGFIKALVAKSKADVLHEHLKGVVEGLLSWQTDTKNSFKAKIKSLMEILV KKCGLDAVKAVMPEEHIKLLTNIRKINERKMRKSKSSEDGDNMSMTSRATRQSRWNHT QMFSDFGSDEDDSNGPFSAQHTVASRTGTKASTRSTRKRQADKSLLEKFIDQSTGEPL DLLDQKTVRLALKSTKKRAMPDEDDDEVEMDPEGRIIVREERERRKKKQPISRDDEAD DRSMVRSQSVKRRKTTSSGWAYTGHDYTSKKASGDLKKKDKMDPYAYWPLDRKLLNRR SDRKAAARKGMSSVMKVTKKLEGKSAASALAAKRTQTKNRKQKKSK</aaseq>

Gene Sequence

<dnaseqindica>781..1090#1195..1449#1722..1813#1952..2149#2256..2447#2548..2769#3065..3231#3324..3417#3515..3571#3666..3794#3888..3959#4387..4500#4626..4787#4873..5001#5264..5365#5473..5549#5677..5799#5873..6434#cccttcgacgcctgactccggtgtgagggctggggtaaggtgcctcgcgcacttgatctcggctggggagaaggcgaactgggaggcagtggagccgctctatggggtggtgctacgtctagcagttgatccccggcctaaggtactagcaaaataccaattctctcaactatgttgctgtcaaaattattacttatgcgggtaaatatgcactgctgtgtaacttgttgtgatatactgataaggtttactgggcatccaatgctgtttcagttaatctgatttaggatgcagaataccgtttagtttaatgggaaattctagacttcataattttagagtcatactccctcatagtaaaataatataactaaactcatttctcccgatgtcaaataaatttgactggagagagtaataatcgaagaaggatactgcacacattgtattcttggctcagcagattttgttcatgttgttagctttactcgtatcaaaattcaattgctctgtatcatgctgaaaaatcattcatagtttgctttgatggggctgtaggtgaggaagcagtctcattcatgcttgcgagatattctgctcagtttccagaggcaagctgttttggtccctgcgagtgaaggaataacgagatgttttgagcgttttctactgcttgctggtggatccaatgctgtaaacacagatgtagcagaaggcggacctaagggggctaaggaagtcttgtatattctgaatgctttaaaatgctgcctccctcttatgtcatcaaaaccttccaataccatcataaaatattttaaagctctgttggatctgcaccaaccaatcttgacacggagcatattggagattctgcatgctgttggcgacagtccaactgtacagcttaaatctgacgtgctactggatatagtatgctctttggggctatctgtctctgttgaaagaaaatcaggggatgaaatggcttcaattgcaaggcttctaaatgttgctactagaaaaatttataatcagaataagaacatatgtgttgtaaagcttccactagtatttacttcacttggaggttggttcttctcacaaaacttggcacctttaagttgatcaattatacctagtaagtcatattatgtcttttgtgtaaaagtcttgttgtaaattgttcgccagatatattggcaagtgaatttgaagaagcaagattttctgctgtggaggctttcaaaagtttaatagaagactgcatcgatgaaagcatgatcttacagggaattacccagattaagtctagacatccagggataagatctgatcccacaaccatagagaagatatgtgctatcctagagggcttgctaaatgtccggtacggtgatgtctgggacaaatcatttcatgtgatttcaatggcatttgacaaattgggtaagtataccactacgttagcatatcctcatcattcaatagcttaggaataatatgagagtctctattttagtaatctggctcctctggtcagagcattaagattcaatgtagcttcttgttcacatcttttgtgttggactctctttcttgagccattaacaacctttatccaaaggtgtttttgttaaattgaattatgctattggtaattagttgcttgattatttgtgataattgttcctgtactgatctctaatgcaaaactacaggagaatcgtcagctgaccttttgcctgaagcacttaagaacttggcagacatgcaaaacttgtcagacgatgacttctctttccggaagcaggtaacttttcccatagaaaaagcaccattgtccttcagcataatataaacaaatttatacctttcatgcaactaactttgtttactccatgtatgtttggttatctcctggcttaccttcatatgcatttatttgcagcttgattcatgtcttggttcagctgttgctgctatgggaccaaagaacgttcttaaaatcctgcagattcattcaatatctgatgaaaatgaatggatcttccccattttagaaaagcacattgttggtgccagtttacaatttttcttaacagatattcgggacattattagagctgtagagaagaacattccaaaggtatcgtccattttttttgaaaatcctaatagttttaaagcaaaaacagattaagcactttcattttaaactgcactgactgtttccaacatcttcaattgaacagcttttaaaggaagataagcttttctccgccaagagagcagaaggttatgtgtattcactatggtctttgttaccatcgtgctgcaattatgcacgtgatacctcaatccactttagagctctgcagaatgttttgtgcgacacgcttaaaaaccagcttgacttgcgtggtatcatttgttctagtattcaggtatttcacactgcatctggttagttctatattgcaagtacttctgtttaagttatgcttttgagcttatttttctttttttttggcttgtatattttaggttttgattaaacaaaacaaggaagcattgtcagttcctgttgaagaggccatacttgctgaggatgaaataagcaaatctgaaagaagagcaaaagaacgctatacgaaagagtttgcagaggaaaacttaaaagcaatacgggctttctcttcaaagtttttggaagttctatgttctatattcttagcttcttcaaatgatgctattggacttctacaggtatattgttgatgccttctatattgtgccatctgcttgctgggctctaaggatctgtactttcgggaattgtttgatttggctctggaagttgatttcttctatgatcagccgacaggtcaaaatttgaaatgtttgataataatctaatgacttcatccgaatagatcacagtggggaactttgaacctttgggtgttaattgttgttgaggattaataattggattgttttgttgattgtttttatatcatgtacaagcataaatgtgacttgttccttctttattgaacagcctgcaataagtgatatagcttccatatcagagaaagacactgttggcaggttctttcttgatgcaataaggaagttgttggatgccacaaaagctgttaatgcagaacaaaagaatgatagttcaatgcaaatcgaagctaattccaacacaaataacatggcaaggtctgcgcaaaatttatattcttgttacttcttattcatgtctagattccagttgaagccgattgttaatttcaatccttgatggatcgtagggctctcctgttggactttgcagcttcattaatgcctggtttagctgcaaaatcgatcaatgtgctattcagttatgtaaaacctgcaattaaggtacatatatgatatattgcaagtatccaagctgttctttttttttaaaaaaaattgtaagttgtgttgtacctgatattttttctcacgctcgtaggatactgactcattgattcaaaagagagcatacaaggtcctttcaatgctgctcaaggtatgtctccgttttcagtttgcactttatgtgaatcatcatggcagatcacagagagataacttgaaatctttatgaatgtttatcatttcaggatactgagtttattgagcggaatttggataccttgttgggcttgatgatttcttctttgccatgccaatttccatcaaagcgctacaggcttgaatgcctgcatcaccttattgtttacattttgaaggttggtagtgaaaaaacatgttatacttgctaggcagatgtggatactgtccctcggattgtaacaggaaccctctgttctctacatctgcaggattcatctaagcttggaaagagggaaattattggttcattcctgactgaaatacttcttgccttaaaggaggtaattgattgtatatttttctgatcctttaatgtagataggaagctaaaatgtatactgccgacagcacactcctaatttgactcttgtgtgttattccctttgaaacgttactgtagcattttgattatttcctgtggtaagtggtaatgtgcagctgtccttacattttctggaagcagaagtatatctactcaagtaactttttatgttctgaattatagacttggatgtattgaattattgttgtgtgccacaataatgacaatatcatgcaagtttcagaccgtcagttctacggcatagttctggtttaagttgtgtgattttttttggatagctagattagacagattctgaaagtatgtgtatggtacataaatgccagctgcgagatgaacaatcatgacttgatgtgtcttcacaggctaacaagaagacaagaaacagagcttatgatctacttattgaaattggacgtgcttgtgaagatgcagaaaatgacgggaggaaggagaatttgcaccagttctttggcatggtactttatgtcattactgtttttaaatgtcttgacaggaccaaactaatgaaatatgaggctctgagccataccaacctcgaactgcattacatttgatttatcagtgctacttttatgtttaggttgctggtggtcttgctggtcaaactccatatgcgattagtgcttctgtaactgggttagctcggttaacttatgagttctctgagcttattggagtagcatacaagctcctcccatcaacttttcttctcatgcagaggaacaaccgagagattgtcaaagtacagcacacaacacatttctggtttattagcttatctatcattctcttcacctccttacagtagccctatatttcctattcaggccaacttaggttttatcaaagctttggtggctaaatctaaagccgatgtattgcacgagcatttgaaaggagttgtcgagggtttgctgagctggcaaactgatacaaagaattccttcaaagcgaaggtactggctatttgcttttgatactataaagcaatggcatttctggtggtatttatataaacgctcacaaacaatgatatggttgtttttgtcctgtggaacttttactattctaataactagatatattcatatcaactcatatagacaatatatgacatgggagaaactaaaagagtgaaatatgcatgatatatcacattacatgtaaactgctgctgttttcttggagcttgctattcatctcttatcttattgccagataaagtcactgatggaaattctagtgaaaaaatgtggtttggatgctgtgaaggctgtgatgcctgaagaacatataaaattgctgaccaacattaggaaggtaacttacagtattttttctttgctcttctcttgaagaatagacagttaatgttgtatgattgtatctggtcaatatgctcaacaattccatgcaatgttaaacagattaatgagcgaaaaatgcggaaatctaaatcttctgaggatggggataacatgtcgatgacctcacgagctacaaggtattgtggtgcatttattgttttttttttgttctgagaatttgttgatagttctgatggcgtgaatgtcacatctatttatacaaatttaacttctgttcaactgtcctggtcatgctccctgcagacaaagtagatggaatcacacacagatgttttctgattttggaagtgatgaggatgactccaatggtcccttttctgcccaacatacagttgcttctcgtactggaacaaaagcttcaacacggtatgtgccacaatagggccacacttggtttgtgaggattttaagtgtttctcacaaactgttatttttccaggtcgaccaggaagcgccaagcagataagagcttgctagagaagttcattgatcagtcaactggcgagcccctagatttacttgaccagaaaacagtgcggttggctctcaaatcgacgaaaaagagggctatgcctgatgaagatgatgatgaggtggagatggaccctgaagggcgtatcattgtgcgggaagagcgggagaggcgcaaaaagaagcagcctatctcccgagacgacgaggccgacgacaggagcatggtccgaagccagtccgtcaagaggaggaagacgaccagctccggctgggcctacactggccatgactacaccagcaagaaggccagtggcgatctcaagaagaaagacaagatggatccgtatgcctactggccattagacaggaagcttctgaaccgcaggtcggaccgcaaagcggcggcacgcaagggcatgagcagtgtcatgaaggtgaccaagaagctcgaagggaagagcgccgccagcgcgctcgctgctaagagaacgcaaacaaaaaaccggaagcagaagaagagcaagtaaggagacgaagggacagagagagatagggcaaggaagctttgtatagctgaaccgatggcccttggcagttgggagggaaagttttggacgtgtacagtgcttggtgaggattcggccgtagtagttgtttttgctcgtttcatctcctatctgtcgaagagaaacactaggttccattcttgccaaaaagggagattttttgaggggaaaaagggggaaattttgacacccgtcggtatgacggtaccagattcagattagatttaattttcttgtaagtttttgattgatgactattgaatttgaaatttgttgcttcctgcccgctgacacttcgctgtaatggaagatgagctgtagcgaaatttccg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0782100, RefSeq:Os02g0782100