Os10g0456200

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Revision as of 08:40, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0456200| Description = Ubiquitin domain containing protein| Version = NM_001071288.1 GI:115482319 GeneID:4348792| Length = 7635 bp| Defini...")
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Gene Name

Os10g0456200

Description

Ubiquitin domain containing protein

Version

NM_001071288.1 GI:115482319 GeneID:4348792

Length

7635 bp

Definition

Oryza sativa Japonica Group Os10g0456200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:17123043..17130677

Sequence Coding Region

17123347..17123469,17123977..17124096,17124858..17124923,17125041..17125089,17125426..17125563
,17127036..17127136,17127225..17127335,17129197..17129361,17130241..17130334
,17130442..17130611

Expression

GEO Profiles:Os10g0456200

Genome Context

<gbrowseImage1> name=NC_008403:17123043..17130677 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:17123043..17130677 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagagctcgccgccgccgccgccgccgaccatcaccgtccaggtcaagttcggcggccgcacgatcccggtggaggtcccggccgccgccaccgccgccgacctgaagcgcctcctccagccgctcaccaacgtcctcccccgcggccagaggctcatctgcaaagggaaagttctggcggatgccgccagcctgagctcgatgcaggtggtgaacggatccaaggtcatgctcatggcctcgcaggggctccatcagggggacggtcccatcactaagaatagtagtgttccagcaccaagcacgagaagagcctcaaatgtgaaggaagctcaaatacaaaagtcggatacaaatgtcagtaaaatccgacctgaacgttggaaagcaactggtattattgcattgtctgattccagcttgaaggcagtgcctgaagaagtatggggctgtggttcttctattagagtactggatgtcagtaacaactgtattgaagcaattccacaagaaattgctgctctgagatctttacagaaattgatcctgactgctaatgatatagctgatgggaacatttcctgggaaggcctaacatgtgttcaaacattaacagttttatctctaagccaaaatcggctggtcactttaccttcaagtttgggctcaataactcatttacgtgaacttcgtattgcaaataacaggcttgagaacttacctgttgaaatagggttactgaagcatcttgagattctgatagcaaataataataggataacttcattgccttcatctataggtggttgtgaatctctcaatgaggttgatttgtcatcaaatcttttggctgaactgccagaggcttttggaaaccttcaacatctcaaggctttgagtgtacggaacaatggtcttacatccctaccttcagctttcttcataaaatgctcgcagctcattacacttgatctccatggcactgaaatcacaaacgacgttcttcggcaggtggacggttgggaggagtttgacgaacgtcgaaggaagaagcatcaaaagcagctcgatttccgggtgggatcatcagttgtgttcgatgaaggtgcggatgacgattacaggcgtttataa</cdnaseq>

Protein Sequence

<aaseq>MESSPPPPPPTITVQVKFGGRTIPVEVPAAATAADLKRLLQPLT NVLPRGQRLICKGKVLADAASLSSMQVVNGSKVMLMASQGLHQGDGPITKNSSVPAPS TRRASNVKEAQIQKSDTNVSKIRPERWKATGIIALSDSSLKAVPEEVWGCGSSIRVLD VSNNCIEAIPQEIAALRSLQKLILTANDIADGNISWEGLTCVQTLTVLSLSQNRLVTL PSSLGSITHLRELRIANNRLENLPVEIGLLKHLEILIANNNRITSLPSSIGGCESLNE VDLSSNLLAELPEAFGNLQHLKALSVRNNGLTSLPSAFFIKCSQLITLDLHGTEITND VLRQVDGWEEFDERRRKKHQKQLDFRVGSSVVFDEGADDDYRRL</aaseq>

Gene Sequence

<dnaseqindica>7209..7331#6582..6701#5755..5820#5589..5637#5115..5252#3542..3642#3343..3453#1317..1481#344..437#67..236#gaaggggcaatcagccaaacaagtaggcagttggcagagtggacgggagacgggagggaggccaccatggagagctcgccgccgccgccgccgccgaccatcaccgtccaggtcaagttcggcggccgcacgatcccggtggaggtcccggccgccgccaccgccgccgacctgaagcgcctcctccagccgctcaccaacgtcctcccccgcggccagaggctcatctgcaaaggcacccgattccccctcccccacccaaacccttgacctcctcctgaccgccaatctgcttccgattataggttttggatacttatcgttctcttgatgtggttgcagggaaagttctggcggatgccgccagcctgagctcgatgcaggtggtgaacggatccaaggtcatgctcatggcctcgcaggggctccatcagggggtaaattaaattaaccgcctcatctttagtgtttttagcaattagctccttttggaatgtggtgaggtacagtttgatttgagggagccttttgtggttgccgaagttgaatgacgatcagaattcgttttgtaggtgcctccatatgttaattagcttgattttttactccgattcgacaccatttcctcttaatattgagattcgtgaactgtgatgtttggggtaaatggctgaatagtttgtagtactgtcatatccttgacccaaccgcacctcaaggcaggattgcctatatgctttgcccgtttgccgcttgcgctaatgttctgtgggacgtctgcaacagccacttttcgcaacaaaaatatttgccatttcacaattgctacaagaaatcaaggacaagctcagtctgtggaaacatcgcatcaaatgcagacatcgcagccatatcaccagctggttactcgagctcagctgatctatgctgcattgctgccccaaatgggagtttgctgcaacaacatcaagatgaattatgctgtaaaatttgcttttatctttctttttcctgttatatttctttctgcattttcttctctttcctttctccctttctctactccttattgtacttggtttttccttttttctcttctttcttctttcttctttttctttttttttctcttttcttgtaccctcccctctatttctctgtactcttgacctaccattaatacaatggttataaggtagagtctctctacctttttgcttaaaaaaaaaccttattgcagtgccaaagcagcgtgagaaatcaatttcttgtccaattcattgtattgagcttacatgtgttccactctccaacaggacggtcccatcactaagaatagtagtgttccagcaccaagcacgagaagagcctcaaatgtgaaggaagctcaaatacaaaagtcggatacaaatgtcagtaaaatccgacctgaacgttggaaagcaactggtattattgcattgtctgattccagcttgaaggtaactgattccaactttcttacattacttttaaactaagcaacttagcgtagttatgctttgaagttcatgaaactttccatgtctgcctttctatcaaaagcaaattgaagtgcctgtgtcaaaactgccaatcgttggtaaggaaaaacatgcacatcgctagagtattatttgtatacttttgtagtcaccacagcctgtagaaaatactataatagtcttgaacatactttctttaatgcatctgtttgcaaaatgctattcatgaatcatgattggaagactgatttatatggcacaggcgcacagccatttgactgccgctatcaactgaatcaggattttcagtgcatacaaggcatctattattcatcaccacgtgataaagcaggccttttagttgttcagcattcaagaacttcattgatattccttactatccattatctttacccttttgaattaagagtcttattagctgtttctcacacttttgtttgttcaacacttagggtgtgtttggttgcctgtatgaagggtggctcgcatctcctcagcaaaattcgctgtgtttggttgcctgcatgggcatgggagccaggctcagctgatgcaaaaaggaccgttgggccaggctgaggggaaacgcaggaatcgaccgtagctcctcagccaggctaggctcatgcacacgcggggatgagcgggtgcagccgcgggatgagggggtgcaggcaacgggcaggggtcgagccatctcgcaatcccctcccctcatttgtttcctcagcaatcggtcgccgtcgtctccatcagtttccctcctcttcaacggcttgagcccgggcagatccaggaggaagaaggctcgacgagggtatccagccgtctggtgagctcgagctcggccatatccaaggaagaagagggccagatccaggaggaagaagagggcaagaggaaggagggctcaacgaggatacccggatctggtcgcttggagggcaacgtcgccaccgccggcatcatcttcctcctcttctcctcgttctcgccggcgctgtcttcttcgttggctcccaactccctccttcaggacctgcgatgttccggatccagtgggcagggcgtccggaagcaacagatccggagccacaaactccgacgacagcgacagacggggcgcaagggggaggagcgacgagcggcggtcatgggctctcagcgtcagcggtctctgtcgaccagcgatggggacgaaggcttcgagggctttctcttttcttttttttttccttcttttcttctttttctcgccgattaagcccgtgattaggaacgtttacttgttttctttttcttgccgattaagcacgtgattaaggaacgtgtactgctactgcgtaatttaccgtttcgatcttttattttgtgaaaattaataatacagtcctgtcatgttacaatttattgagtttctatttgttctacctaattaaatttgatactacattttgttcaaatttgaaagattatagattagataatatttatgtatggttggctaatatcaccatccaaataaagagacaattgagttcaaagtacatgcatccaaccaaacacaatcttttgcatacaagtttttatatccaaccaaccaaacaatatctcatacgagccgggctcatctaatacatacaaccaaacaactcctattgcatcattctaaccaggctaaacccagcctggatgaggcatacgagccaggctgagtgcattcgagcaaccaaacacacccttaatttcacttttggttgaatttttgggcttatactgtggttgtcttttcgagtaggcagtgcctgaagaagtatggggctgtggttcttctattagagtactggatgtcagtaacaactgtattgaagcaattccacaagaaattgctgctctgagatctttacaggtaattgttcttccccaatatgttggttgagacatcttcttcattcacaaggaaatataattgaatgtatcatcctttcatcttgtagaaattgatcctgactgctaatgatatagctgatgggaacatttcctgggaaggcctaacatgtgttcaaacattaacagttttatctctaagccaaaatcggtaggtctgatttttcaacatcctgtttcatcatgctatgaatatttgttttgttgccagtggatataaacaaccctttgtaatttccttaaataatcttctctttgtgctctcaataatgaaaaccgctaagctataatttttttttctccagactcttatatatgttcttagattcacccacctaatatttcaaactccacttaaacagttaggctcatacattgaaaagaaaaatgtagcaatgcataatatcttaagctggttcttttttgggttaattagatacatgccattaaaaattcaccggttttgaaatataccattactatttgcgtatttggaacgatgccattgatatttgtttgtaatttcagtggtgccactaagacacgtattttgcatgtattggacgaaaatgccctcatcttctacctctatccctcttctctcatcttcaagctctctctccccgctgcttcaactccggcgccgtcaccgccgctgctgctgccgctgccgcgccgttgctgttcgatgccgctgctgctcgccgctcgcgctgctgctcgccgccgctccgcatgctgctgccgccgcaccgccgctgccgctcaccgctgccgttgctccgccgccgctgccgctcgccgctcgcgccgctgctgccgttgttactcgccgccgctccgcacgctgccgccgccgctccgccgctgccgctcgccgctcgcgccattgctgccgttgctggtcgccgcctctccgcacgctgccggctccgccgctgccgctcgctccgccactgccgctcgctccaccgctgttgctcgccgctcgctgctgccgccgctccgccgccgctgccgctgctgccgttgctgccgccgctgctccgccgctgccgctcgccgctcgctccgacgctgccgctgctgccgctcgctccgccgccgcttgctccgccgccgcctgttctctgagctgtggaagaaggagaggggagaaaaagaagcaaagaagggtaatttggtccaaattttttcgtaaatggtaggtagtggcatatcttgaatatgtgtaaaattgtaatggcatggttccaaatacgcgaatactgatggtatatttcaaaactgataaatttttaatggtatgtatctaattaacccttgttttttcttgaataactggaaaggccttgaggtgctcagtttatctcagtggtttatgtggtgcaaattgttcttgtatcccttaattttcctgtcttgtgccagcacccgtgtcatgctgggccagcaatatcaaaggtgccagggcaacctgtccacggtagcagattatgggcatgctggcaaggcacagtagaccttaggtctttatccattaggaagtttcatgtccgccattattgtttagaattgaagatgacgagatgatatgttctaaatttataatttttcatgcaggctggtcactttaccttcaagtttgggctcaataactcatttacgtgaacttcgtattgcaaataacaggcttgagaacttacctgttgaaatagggttactgaagcatcttgagattctgatagcaaataataataggtactgtgctactagtgcttaactgaagtgactcattgaagtctcatttttttgctatgcttatagcataatttacactttgtgctaatgtgaagagttacctcaagagaggatttctgtatataatatagttgttgatagatttttcacaatcatgtgagactttcagcctgtgagcagttccattatagaaaaacttttaaagaaaatgtattctatcaagccagaaaatatgtcttttcttatacttctaatgagaatttacatgattacttttgttttgagaattgaaaggtatcctgacttccacactgctacaatttcacttgttggcaggataacttcattgccttcatctataggtggttgtgaatctctcaatgaggtgtgtgctttatttctgtttcagttttccttctagttctaggccatactgagcacttagctcttctgagtttccatatggcaatttctggttcatcaaaatttttaatttcattaggttgatttgtcatcaaatcttttggctgaactgccagaggcttttggaaaccttcaacatctcaaggtatgtgcctatgggccacacatggagaaatatattccttaataaaagactaaatctgcatgcatacttctaagctatcttgttcctagcattgaaacaagatattactagtgcccttggttcaagatggtacaactacatgcttactcccccattttaaggaagtttaagttgcatgttcataaccaatgaacatataaaaatattatttcgcacaacagtaatgccacaacaaacctgatatgtgagtagtcagcgtgaaacattccatgcaattttgtggtatcatgtagcctgcaggttcagtttgaacttaattttttatttattatcagcatacggtggacaaagttttggcttatgacttgacagttgagagagtcatgagtatttatcgttcatttgttatactccctccggtcaaaaatatttttgtcggaattttaattgtttgaccaaaccttgtcctaaacaacagatatttttgactggagggagtatatgattattgcaccagatcgttattaaactatagcattactagctaaacttggtcaaaagatttactatcctgctgcttctagttgttcactgtatattatttatgtcagagcagatggttatttgtgctttcctttatggtgatattttttttccattcaatattttttcttttgtctagcatgggtgtaataatcagttacattgtactgtcatcagtttctaatgttccttttttcaaaataactttattccatcaggctttgagtgtacggaacaatggtcttacatccctaccttcagctttcttcataaaatgctcgcagctcattacacttgatctccatggcactgaaatcacaaacgacgttcttcggcaggtataagtgacctaagtgacccaaggcttcacagttatgtagtgtttgttactttgttatggtcagtactctactgaattaagatagctaccagcatatgcttaagacctggacagttcagtaatcactctcttaaatagcctattggtttcactttttgggacgccaaagttgatacccaccacgttaaatacataatacataatacccacaacgttgatcaagttatatagttcagggtaaacatgtggtgaaaaccccaacttaggtgacaactcgtgtccatctacatgtgtgatttattttgatgaatttagacgacttttttggcttgggtttacacgagttttcacctaagttgggatttccaccatatatttacctttccgttgcgaaaaaggcggataagtcgtttatttgctagcggttgctttcattggtcctggctctgatggagacatttcaaccttgccactgctaatgccagtttttacttgtggaaaacaggtggacggttgggaggagtttgacgaacgtcgaaggaagaagcatcaaaagcagctcgatttccgggtgggatcatcagttgtgttcgatgaaggtgcggatgacgattacaggcgtttataaataaaatctctctttggataagattgtgtattttatgtctccagcttaatccgttgtcgcaagaataacttgtatacttaagaacaaattaggagctgatgttgctactcacatcaatcctagatatgtacttgtacttcatcctttttcaaaatcccttctttttagggattctttaaactgtttagggcatcaagagtggaaaaacattactccgtccatttctatttactcgtgactgttgaccaatcctgttgtaactttgaccactaataaattttgaatggtttgaattatgatgaac</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0456200, RefSeq:Os10g0456200