Os10g0456900

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Revision as of 08:40, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0456900| Description = contains InterPro domain(s): IPR002035| Version = NM_001071293.1 GI:115482329 GeneID:4348797| Length = 2327 bp| Def...")
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Gene Name

Os10g0456900

Description

contains InterPro domain(s): IPR002035

Version

NM_001071293.1 GI:115482329 GeneID:4348797

Length

2327 bp

Definition

Oryza sativa Japonica Group Os10g0456900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:17167439..17169765

Sequence Coding Region

17167653..17167685,17167803..17167928,17168021..17168119,17168200..17168379,17168468..17168749
,17168849..17169751

Expression

GEO Profiles:Os10g0456900

Genome Context

<gbrowseImage1> name=NC_008403:17167439..17169765 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:17167439..17169765 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggactataacagagaatctgaatcaaacttggctaacagcactgatatgaacagtgctgctgctccttctgttaatttttcaagcaatgaagtccctagtctggaaatatctatgcccaactctggggatggctctaggttattgtctaactctaagccagagttgcagactgatactccaccatcgcagatcaaacagacaaatccttttaggagcattggagatgcaatggcggactggaaagaacgggccaaagtctcagctgatacgcaggatcatcaaccagaagctgaacaccatattgatgatgaaagtgctaccgaatttcgttatgtgccggacagtgagcagagcacctctcaggcactgggtaatgcaacagctgatcaaatcaacgatgacctgcaagtcaaacagtcttccatggaggatgaaaaccgtgtgcaaaaagaggaacacaatactgacagggcacctggagatgatcataatcttgaagtgccacatctgcaagcttcacaatcacgtaccaacaaatctgaaaatgccaacaaccttgagcatagagagattcaaactgatacatatgttcaggattcagttcaaggtgaaacagacgagacttttggagattttgtttcgttcaaacaacctccagcagatgaaaaaacagttatgcgggatgatttagccaatgacagggagttgtctactccgatggaaatcaacatcactgatgtagatatgaaaggtcctattgttgactggaaaagtgttgagctcacaactatgaagttgtcccaagaacttgctgagcaattgcgccttgtcatggaaccaactcttgcaagtaagcttcaaggagattacagaactggaaagagaataaacatgaaaaaggttattccatatattgcaagtcatttccgcagggataagatatggttgcgccgaactaaacctaataaacgtaattaccaagtggttattgctgtggacgactcacggagtatgtccgagggcaagtgtggaaaagtggctattgaagcattagttacagtctgccgggccatgtcacaacttgaggttggacagtttgcagttgcaagtttcgggaaaaagggaaatgtcaaagtgctacatgatttcgatcaggtcttcaatggagaagcaggaacgaatatgatttctagtttgtcctttgagcaagacaacaaacttgaggatgaaccagttgctgatctcttgatgcatctgaacacaatgcttgatactgccgtggcacggtcacgtacaccgtcagggcaaaatccacttcagcaactcgtactaataatatctgacgggaagttccacgaaaaggaaaatttgaagcgttgcgtcaggaatgtccttaacagaaagaggatgatcgcatatgtgctcctagatggtcacgaggaatctatcatggattcactggaagtatcctatcaaggtaccaaactaaccatggggaaatatatggactcctttccattcccttactatgtcatgctgaagaatattgaagcacttcctcgtacattggctgacttgcttagacagtggtttgagctcatgcagagcgctaatgaatga</cdnaseq>

Protein Sequence

<aaseq>MDYNRESESNLANSTDMNSAAAPSVNFSSNEVPSLEISMPNSGD GSRLLSNSKPELQTDTPPSQIKQTNPFRSIGDAMADWKERAKVSADTQDHQPEAEHHI DDESATEFRYVPDSEQSTSQALGNATADQINDDLQVKQSSMEDENRVQKEEHNTDRAP GDDHNLEVPHLQASQSRTNKSENANNLEHREIQTDTYVQDSVQGETDETFGDFVSFKQ PPADEKTVMRDDLANDRELSTPMEINITDVDMKGPIVDWKSVELTTMKLSQELAEQLR LVMEPTLASKLQGDYRTGKRINMKKVIPYIASHFRRDKIWLRRTKPNKRNYQVVIAVD DSRSMSEGKCGKVAIEALVTVCRAMSQLEVGQFAVASFGKKGNVKVLHDFDQVFNGEA GTNMISSLSFEQDNKLEDEPVADLLMHLNTMLDTAVARSRTPSGQNPLQQLVLIISDG KFHEKENLKRCVRNVLNRKRMIAYVLLDGHEESIMDSLEVSYQGTKLTMGKYMDSFPF PYYVMLKNIEALPRTLADLLRQWFELMQSANE</aaseq>

Gene Sequence

<dnaseqindica>2081..2113#1838..1963#1647..1745#1387..1566#1017..1298#15..917#caaataatgccgaaatggactataacagagaatctgaatcaaacttggctaacagcactgatatgaacagtgctgctgctccttctgttaatttttcaagcaatgaagtccctagtctggaaatatctatgcccaactctggggatggctctaggttattgtctaactctaagccagagttgcagactgatactccaccatcgcagatcaaacagacaaatccttttaggagcattggagatgcaatggcggactggaaagaacgggccaaagtctcagctgatacgcaggatcatcaaccagaagctgaacaccatattgatgatgaaagtgctaccgaatttcgttatgtgccggacagtgagcagagcacctctcaggcactgggtaatgcaacagctgatcaaatcaacgatgacctgcaagtcaaacagtcttccatggaggatgaaaaccgtgtgcaaaaagaggaacacaatactgacagggcacctggagatgatcataatcttgaagtgccacatctgcaagcttcacaatcacgtaccaacaaatctgaaaatgccaacaaccttgagcatagagagattcaaactgatacatatgttcaggattcagttcaaggtgaaacagacgagacttttggagattttgtttcgttcaaacaacctccagcagatgaaaaaacagttatgcgggatgatttagccaatgacagggagttgtctactccgatggaaatcaacatcactgatgtagatatgaaaggtcctattgttgactggaaaagtgttgagctcacaactatgaagttgtcccaagaacttgctgagcaattgcgccttgtcatggaaccaactcttgcaagtaagcttcaaggagattacagaactggaaagagaataaacatgaaaaaggtacttctgtttctcacgatcttgttttaatgctaaaagaacagccttttccattttcaaggtgttcactcatatgatggtgcattgctattttttcaggttattccatatattgcaagtcatttccgcagggataagatatggttgcgccgaactaaacctaataaacgtaattaccaagtggttattgctgtggacgactcacggagtatgtccgagggcaagtgtggaaaagtggctattgaagcattagttacagtctgccgggccatgtcacaacttgaggttggacagtttgcagttgcaagtttcgggaaaaagggaaatgtcaaagtgctacatgatttcgatcaggtcttcaatggagaagcaggaacgaatgtaggtttcatgaaattgattgcatgctcttttgctttccaataaatgaaactcacgagctgttgctcactttcttctctgatgacagatgatttctagtttgtcctttgagcaagacaacaaacttgaggatgaaccagttgctgatctcttgatgcatctgaacacaatgcttgatactgccgtggcacggtcacgtacaccgtcagggcaaaatccacttcagcaactcgtactaataatatctgacgggaagttccacgaaaaggtaccagtttttccatcacataattttgtatatctcacagtgcctaccttttggttctgatgttcgcatcgcgtcattaggaaaatttgaagcgttgcgtcaggaatgtccttaacagaaagaggatgatcgcatatgtgctcctagatggtcacgaggaatctatcatggattcactggtgcgtacccctcaaatctcagtgacatggttatcacttttcacgattagctaattaactgagtttggaatccttttggcattgacgtgcaggaagtatcctatcaaggtaccaaactaaccatggggaaatatatggactcctttccattcccttactatgtcatgctgaagaatattgaagcacttcctcgtacattggctgacttgcttagacaggtacagattatcctctgccttagctcctgctatttacgaactaatggatggtttactcatttctgttctctggtccctctctgtctgacatgtggacttgtcttctctctgttgcagtggtttgagctcatgcagagcgctaatgaatgatcttttggatgctcatcaaagtaaccggaggaagaatgccctcgcgcccatcactgtaatttgtgtatagaatactaccaaaattttgagtcccctaggcttctagctgcttacacactttgggttaacaactgttccaaggcctgagctgtgtacaaaatataccacatttcgttgtaaactgcatttgagaaatgcaagcaattttgtagct</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0456900, RefSeq:Os10g0456900