Os01g0100900

From RiceWiki
Revision as of 04:15, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0100900| Description = Pyridoxal-dependent decarboxylase family protein| Version = NM_001048275.2 GI:297595884 GeneID:4326459| Length = 526...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0100900

Description

Pyridoxal-dependent decarboxylase family protein

Version

NM_001048275.2 GI:297595884 GeneID:4326459

Length

5265 bp

Definition

Oryza sativa Japonica Group Os01g0100900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:34743..40007

Sequence Coding Region

34743..34939,35027..35072,35517..35668,35818..35877,36594..36818
,36892..37033,37276..37326,37434..37525,38319..38445
,38553..38568,38939..39046,39135..39189,39456..39602
,39703..39781,39885..40007

Expression

GEO Profiles:Os01g0100900

Genome Context

<gbrowseImage1> name=NC_008394:34743..40007 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:34743..40007 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagctcgccatggattttgcgctccgcctccgcgacgccgccaaccaccacctctcccgctacgagcctctcgtgctcctcgccgcgcccctcctcgccctcctcgctgcccgcaccctccacgccgccgctgccgccgtcgccgaccgcggtctccgcaccgtcctcctcgctctagccatgacagccatcaagttgcttccgggagttagcgcctacatcaacgctgagaagaggaaggttgttgaccagctgcagtcaggtggcacgtccacaaaaagtactctgcggaccgagttgccaactgttgggctttccaaccaagtgataaacgatctcgaaacactgaaagctagagatgtaaactggcagggaaaatgctctggcacagtttatattgctgggagtgaatccgaaggtcattttgcattgataaacaaggcttactctatgttttcacacaccaacccacttcaccaggacgtattcaagagtgtggcacaattagaggctgaagtagttgcaatgacagctgctttgcttggcatcaaagaaaaatcatccggtggacagatttgtggtaatatgacatcgggcggaactgaaagcatattattagcagtaaaaacatcacgcgactatatgcgaacaaagaagggcattacaaagcctgaaatgataattgccgaatcagcacattctgcatacgataaagctgctcaatatttcaatattaaagtgcggcgtgtgccagtgaacaaagagtttcttgcagatgtgaaaggattcaaaaggtgtataaacggaaatacgataatgatggtggggtctgcaccaggatttcctcatggtttaattgatcctattgaggaacttggggagttggcttcacgatatgacatttgcttgcatgttgatctctgccttggtggatttgtattgcctttcgctcgtaagcttgggtaccctattcctccattcgacttctgtgtcaagggagttacatcaatctcaactgatgttcataagtatggattagccccaaaagggacaagcattgtcctatataaaaatcatgaaattagaaagcatcaatttgttgctgttactgaatggactggtgggctctatgtttcacctactattgctggaagtaggcctggtgggttgatagcgggagcttgggctgctatgacgtctcttggactgaacggttatatggaaaatacaggtcatatcatggaagtgtcgaagaaaatacaaagagggattgaagatatcccagggttgtttgtgattggaaagccagacatgactgtcgtggcatttggctcagattcggttgatatatttgaggtgaacgacataatgtcatcaaaaggctggcaccttaatgctctgcagagacccaacagtttacacatttgtgtgacactgcagcacacggtcatatatgaggaattcctgaaggatctgaaagattcagtggacactgtaaaagcaaatccagggcctattagcggggggcgagctccgatttacggagctgctggcaagatgccggacagaggcatggtcagggagctgctggtggagttcatggacgcgtcttgctga</cdnaseq>

Protein Sequence

<aaseq>MELAMDFALRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAA AAAVADRGLRTVLLALAMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELP TVGLSNQVINDLETLKARDVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLH QDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRT KKGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMV GSAPGFPHGLIDPIEELGELASRYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKG VTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLI AGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFVIGKPDMTVVAFGSDSVD IFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTVIYEEFLKDLKDSVDTVKANPGPIS GGRAPIYGAAGKMPDRGMVRELLVEFMDASC</aaseq>

Gene Sequence

<dnaseqindica>1..197#285..330#775..926#1076..1135#1852..2076#2150..2291#2534..2584#2692..2783#3577..3703#3811..3826#4197..4304#4393..4447#4714..4860#4961..5039#5143..5265#atggagctcgccatggattttgcgctccgcctccgcgacgccgccaaccaccacctctcccgctacgagcctctcgtgctcctcgccgcgcccctcctcgccctcctcgctgcccgcaccctccacgccgccgctgccgccgtcgccgaccgcggtctccgcaccgtcctcctcgctctagccatgacagccatcaagtaagctttaatcgacttcaatctcctcctcttttcttacttgttgctgctattactattattatccgttcatacatacacacgcaggttgcttccgggagttagcgcctacatcaacgctgagaagaggaaggtcagcagcacacgcatctgagtacctcttcaattctctctctccttttcttgtagtaatcgctcgctagtggcttttatttttaaaatgaaaaataaaaatactttcttttctactctactcatttttttacatatgcatatgcctaccctacatatgttaaattttttgcttcatctttttttttctttcctatgggaatgctccgtgggtattcagatgctacgttcgttcagtttgacatatgcagccgcgcgcattaactgggaatgctcgcgtgcacgcaactcagccaggcgtaccgtctctcttatgattgtgaatgccattgtgaatgcgattgatttaagaccatgttcatgtcaaaacaaaaataaaaaaaagtacttctacctacatatccccggatatctcattattggtgctatacttatattgtaacaggttgttgaccagctgcagtcaggtggcacgtccacaaaaagtactctgcggaccgagttgccaactgttgggctttccaaccaagtgataaacgatctcgaaacactgaaagctagagatgtaaactggcagggaaaatgctctggcacagtgtatgtgcatcccattaattctcacacaaaataaacccagtaaattaaacggttcaatcattctattgtggttcttttcgttatgctgtacactctacacatattactagcattccgcatgtcaaataactttttttttaatattgcagttatattgctgggagtgaatccgaaggtcattttgcattgataaacaaggcttactctatgtaagacttgggattttgaccctgtctcaatctctatttaaatagaatatatagacaataattggtcaccatgttttccaataggagggcgacttaagaaagtatataataaagtgtatttattgttttatttatgctctgttgcgttggtggaagaaaaaaagtaatttgcataattttatttttttccctagggaataccgtcataaaattcatgtcagcctgtctcaactatcaagataaatagtccactagattacttcaaatgtatagtagggaaacatatgttcttccagattcaaaccaagtgcctctgttagtattttggtgaattgacttatttataactcatatttcaaagttaccatgtagtccctccatcccaattgatcatcatatatatttatgcaccaagaccaaagataatttaaatcacatcaatcgagacaccatgcacacattctccccacatacatgcatcgattaaaacatcatgccaattacatccttagcatgtacacattctcccttgctacattaattgtattctgatgaaacccgtgtccatgcggttatgtaatgatcaatttgagaaattttggatttcattatatgatgatcaatttgggaaggagggagtaactttttctagtttttataggcctccatctaattttaggcttctaatttaccataaatattcttaatcctttcaggttttcacacaccaacccacttcaccaggacgtattcaagagtgtggcacaattagaggctgaagtagttgcaatgacagctgctttgcttggcatcaaagaaaaatcatccggtggacagatttgtggtaatatgacatcgggcggaactgaaagcatattattagcagtaaaaacatcacgcgactatatgcgaacaaagaagggcattacaaagcctgaaatgtgagataaatgatggattatgttatgcattgtgatcaccttatctccatggtaataaaggcttgtgatacaggataattgccgaatcagcacattctgcatacgataaagctgctcaatatttcaatattaaagtgcggcgtgtgccagtgaacaaagagtttcttgcagatgtgaaaggattcaaaaggtgtataaacggaaatacgataatggtgagattttatccatattcctgtttctctagttagcttaaagctgttctgatgcctccattcacctgagatgaaagatatttgcatttgtcttttcctaaggaaagattagtatgtaccttctgaccctgtgaccttttataaggaaagattagtctttacctttaccttcttcctactcttacatttcttagtgtacatgtaaatatgtaaatgttccctaacaattttctgttgcacagatggtggggtctgcaccaggatttcctcatggtttaattgatcctattgaggtatgttaatcaatcatcgttatgttaaagaaaaccaaaaatattttttcctactgaaattgtgcactgcaagttcagtgatttcttgtatcccggatcatcttcaggaacttggggagttggcttcacgatatgacatttgcttgcatgttgatctctgccttggtggatttgtattgcctttcgctcgtaagcttgggtacctacttacttcataacatgatatcttaccattattattagcacttgagcaaattttgaatagctcgccaatatacacatttaatcattttcttacagcaacatgatggtttgcctattaatgattgctttaatttcaatagaggaggtctcaaactgtctacataagcaatttgttgatacctgtattatattgcttttcacctataatcttgggtattccttcatgaccattcatttgttccctttatctggatttactcgactgttctcagatgatgttctgatttcttatcagtaatttcagcatttgcatgaactttgaagaacttgccagaacattacgtaatattcacttttttaatcatgtaacatgatggtttgcctgttaatgattgttttaattttgtcccgaactgccaccaactgtgaactaaaaacccaaaggttatggccatgtataaccacatatggaacaagtgtgtgcttactatcgcaatacccaagctaatgtgaagtgaacaaatatgcaaatttttgctaatccctagtcatagatcaggtctgatgaatctggactggtttaaagcaatcttatgatagttacttatcttaatgttcatttatgtcccatttattggttttagatacttgaagtatatgtctcttttgttagaaatgatgtgttataacttcaatcatatatggcatccattttgtcaaggccattgttacatctctgattgaactaatgttatgtgtactaattctatgacttctctgcaatacaggtaccctattcctccattcgacttctgtgtcaagggagttacatcaatctcaactgatgttcataagtatggattagccccaaaagggacaagcattgtcctatataaaaatcatgaaattagaaaggtaaaaatagccttggagtatttttctctttacttttctcagatattctaacattattccctccatctatttggcactggcatcttggatactaccaccaaattcagcatcaatttgttgctggtaagcttcaatcatttcctatgaaacttctctcttgagtaaacctttttaaggggttctcacttctcaataaaattttgacctctatatttattcgacagatatcatggttgtcgttacataactattacagcttaacagatatgatcatgttgcaaaactgcacgaaaatgttcaaacagggtagaatatttcttacatgattatggtaactttggttggaagaacgtagattcatgcaatgcaaatggtagtttgcgtcctagtagcccttggcttactttccactatctgacatgagcaacgaatcttgaaccaaagtttgaatagtggtttaatgtggggattttgcttccttattttttttcagttactgaatggactggtgggctctatgtttcacctactattgctggaagtaggcctggtgggttgatagcgggagcttgggctgctatgacgtctcttggactgaacggtaacaggtttattcagaagttgaccagtccagtggtagtttagtagtggaacagtatttctaatggatacttgtgcttggtttccaggttatatggaaaatacaggtcatatcatggaagtgtcgaagaaaatacaaagagggtaaacttgcctgtttatcatccttggaagcctagagtataaacatatataaagactgactactgtggtgttttggtatcagttagtttgggaaattttttgaacagaagtgccattcacatcaatattattcctcataattgtagggatgcacattgtgtatagtcaaatggcaaactttagatgccctttcatgtagatgtgctgcatctgaattcttgagagcacgtgtttaaagagagaaatgtattgaatgcattgcgcaggattgaagatatcccagggttgtttgtgattggaaagccagacatgactgtcgtggcatttggctcagattcggttgatatatttgaggtgaacgacataatgtcatcaaaaggctggcaccttaatgctctgcagagacccaacaggtaaaacaaaaacatagtctggtttcagattcagacaaataaccatagtgtaacgtatttatgtacgagtgtagcctgacgatgtttttttctgtttcagtttacacatttgtgtgacactgcagcacacggtcatatatgaggaattcctgaaggatctgaaagattcagtggacactgtgagttaccaacatatgcatgttttgtcttgatagagtagtatatgattgtagtgaagctactaaggtaactaatttttctgtgtaaattgcgatgctgtaggtaaaagcaaatccagggcctattagcggggggcgagctccgatttacggagctgctggcaagatgccggacagaggcatggtcagggagctgctggtggagttcatggacgcgtcttgctga</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0100900, RefSeq:Os01g0100900