Os01g0103900

From RiceWiki
Revision as of 04:15, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0103900| Description = Polynucleotidyl transferase, Ribonuclease H fold domain containing protein| Version = NM_001048295.1 GI:115434003 Gen...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0103900

Description

Polynucleotidyl transferase, Ribonuclease H fold domain containing protein

Version

NM_001048295.1 GI:115434003 GeneID:4326452

Length

4259 bp

Definition

Oryza sativa Japonica Group Os01g0103900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:200944..205202

Sequence Coding Region

201042..201110,201252..201359,202007..202127,202302..202429,202511..202658
,202760..202938,203203..203440,203543..203635,203730..203875
,204042..204149,204290..204378,204534..204543

Expression

GEO Profiles:Os01g0103900

Genome Context

<gbrowseImage1> name=NC_008394:200944..205202 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:200944..205202 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgctgctctgcttcctgctcgacatgcggaacatcccccctccgctcctccacctcctcaagcagtgcctactccacctcgccaacctctacgccgccatcccctccgccgacctccccgaccgcctcgccctctgctacgtccaccccgccgcctcctcctcgcctcctcagctcaaggtggtgtataggcctggagagaaatttaaccttcgagacttccatcatgctgtcaacaatttgcctctcgatgcctttcgtcctaaccaacatggatctctacatactactggagatgtgtcattaacaaatctttttagcaatcgagctatctattcttgggccactgatgatacctccaaaaaagtgattgctttatgtatgtctgcacaaaacacacaagctctccgaagatctctcatggacgcagcagaacagtgtattacagtggagtttgtattgctggaaacaggagctgcattcgtatgtgatggtgtttctgaaaattccaatggtttcatagacacaatttgtgaccttgaaaactgtgtggtacgaagatacagtcctgagactcaagttttgcatggattagtcaagaggtggttagaagagctaaaggatgacaaggaggaggcattgcaggctgtatttgtattcagagttcccattatcagcactgttaatcaaatatcttgcagcatgtatgcttcagcaaatcacatcattgatggttttccatcatgtcagatatgcaggtgccatggtcgccctattgaccttgctaacacaaataaggcaaaatggatgtgcccaataactagccgacagctcacagcttctgatgttactgatactgctgtgaaaattggggaacagacagtactgtttcttcctgactcagaaggcgtttcaagcttgcgacgagcctcatcctccatttcttttgacgtgattgagcgcaccaatttagcctcactaaatgaaggactcataattgggacgcctcatattgtgattcccagctctaatgatgttgaggttgctcttgatgatgagtgctcagatcagaacacccaacttttctatggtctatgtgagacacttttcaagcttgatcagggacttgtgtgctcctcaaaatgcaatactgaaacgatgaagataggatcccttgagtgttattatcttctccaaccatctgagaagggaccgatgcttctgaggaggcttgctggatctgaagagatactgcctctcccagttgtgagtcgaccttgcaactctaccggtaccaaggaagtccagaatttgatcgaaacctcattatctaagattgtgctgaaggattacaaccctctacaacatgagagaggttttcactcgagactgaattgtctggtgaaggatagccttcaatttggttgtgattga</cdnaseq>

Protein Sequence

<aaseq>MALLCFLLDMRNIPPPLLHLLKQCLLHLANLYAAIPSADLPDRL ALCYVHPAASSSPPQLKVVYRPGEKFNLRDFHHAVNNLPLDAFRPNQHGSLHTTGDVS LTNLFSNRAIYSWATDDTSKKVIALCMSAQNTQALRRSLMDAAEQCITVEFVLLETGA AFVCDGVSENSNGFIDTICDLENCVVRRYSPETQVLHGLVKRWLEELKDDKEEALQAV FVFRVPIISTVNQISCSMYASANHIIDGFPSCQICRCHGRPIDLANTNKAKWMCPITS RQLTASDVTDTAVKIGEQTVLFLPDSEGVSSLRRASSSISFDVIERTNLASLNEGLII GTPHIVIPSSNDVEVALDDECSDQNTQLFYGLCETLFKLDQGLVCSSKCNTETMKIGS LECYYLLQPSEKGPMLLRRLAGSEEILPLPVVSRPCNSTGTKEVQNLIETSLSKIVLK DYNPLQHERGFHSRLNCLVKDSLQFGCD</aaseq>

Gene Sequence

<dnaseqindica>99..167#309..416#1064..1184#1359..1486#1568..1715#1817..1995#2260..2497#2600..2692#2787..2932#3099..3206#3347..3435#3591..3600#ggcgtctccgaaattcaaacggatcgatttggttttgttgatttgatctggccggacaaggagaagcagaggaggaggagagttcgagatcgagatccatggcgctgctctgcttcctgctcgacatgcggaacatcccccctccgctcctccacctcctcaagcaggtgacgtgacgtcacctcctccttctacctcgtgttggtggtggtggtggcggctatggcggccatggcggctacttctgatcgagcaagcaaacttcaaattaattaattaagctctatatatctacgctacgcatgcagtgcctactccacctcgccaacctctacgccgccatcccctccgccgacctccccgaccgcctcgccctctgctacgtccaccccgccgcctcctcctcgcctcctcaggtttaattcgtttttctcttgcctgcactttcacttttccgaattttagtctctctctctctctctctctctattaactgccccgattgccatacttcttcactccctagtggactagcagtaaatgattgattgaaccaaccggcaccatcactagtaaatcacacaccacaatctctattatctgtaactgcccttgtttctgactattcttcttttttaatttttagataatgagcttgtttctcactgcgatgctggatgtttgcactctggattcatctctgtttttctttaagttttcactctacatgctttgcaaatctgagctgtttgttttacttgtaaaagatggccaatatacactgactaagtctgtggctcattgtggaattactactgttttttattgcatcattcatatctcgattgattgccaatcatatccctcactgaaactactaagctgccttcatgaacaacttaaccaataccgactcaccatataaaatgtgttactgcatgctcatgtaagtagatttctatttacggtgctcactaatctcaaacccagccaaatacatattcctcccctcacttttgtgaatttcccaaactcactaacataacatgtcaacttccaccagctcaaggtggtgtataggcctggagagaaatttaaccttcgagacttccatcatgctgtcaacaatttgcctctcgatgcctttcgtcctaaccaacatggatctctacatactactggaggtaataattatattcatgctaactagggatgatctccgtgttcaatgtttgatcatttccataaccaaacttactaggcaacataaacgactgaatctctgctctctaactgagtacaatgcacgctcttcaaatacaaaaaatattatcttactcaatttttctcctctgcagatgtgtcattaacaaatctttttagcaatcgagctatctattcttgggccactgatgatacctccaaaaaagtgattgctttatgtatgtctgcacaaaacacacaagctctccgaagatctctcatggtgtggacgattgtctttgcaactttctttccaagggatcaagtaacccgcttaatattccttttcttttgacatcatcaggacgcagcagaacagtgtattacagtggagtttgtattgctggaaacaggagctgcattcgtatgtgatggtgtttctgaaaattccaatggtttcatagacacaatttgtgaccttgaaaactgtgtggtacgaagatacagtcctggtgaggttcttgtttatctccttatatacaagtaaaacaaccctcttgattaacgcaaactataatagtgtcatcctgtaactacaaacttggaaatgcagagactcaagttttgcatggattagtcaagaggtggttagaagagctaaaggatgacaaggaggaggcattgcaggctgtatttgtattcagagttcccattatcagcactgttaatcaaatatcttgcagcatgtatgcttcagcaaatcacatcattgatggttttccatcatgtcaggtgaagcaatttatacgtgtcacatattactaattaactgtactgattatggtggttaatttcttttgacgttcactttcatcttgtccttgcaagtttctgaaggaattttgccatatggatttggtgatttcatcatgccctttttttagcttttcatttacttcggacaataactatcatgtctacacactttactttaagcaatcctgtagcttcttgcaggtttatgttacctatgttaatccagaccatattgaacagatatgcaggtgccatggtcgccctattgaccttgctaacacaaataaggcaaaatggatgtgcccaataactagccgacagctcacagcttctgatgttactgatactgctgtgaaaattggggaacagacagtactgtttcttcctgactcagaaggcgtttcaagcttgcgacgagcctcatcctccatttcttttgacgtgattgagcgcaccaatttagcctcactaaatgaaggtaaccaacactgttagctattgtgataggcattacattagttagtctttagaggctctgtatcttctccgtacaaaatttaatggcaaactctgttaataggactcataattgggacgcctcatattgtgattcccagctctaatgatgttgaggttgctcttgatgatgagtgctcagatcagaacacccaacgtaggtctaacggtatatctgcaatatgtctttggcttcttaaatggtcgtgacatttcaacatctatagtgtgtattctcatattctgtgcagttttctatggtctatgtgagacacttttcaagcttgatcagggacttgtgtgctcctcaaaatgcaatactgaaacgatgaagataggatcccttgagtgttattatcttctccaaccatctgagaagggaccgatgcttctgagggtacaggcgacgccccccgccctgctctattgcaataataattcaaggcacaccgcactgcacttttatgctgtttgtttagtccatgaacatccattaccgtaattgcaagtgtatgtggtttgcttttgcttggttctaacagtaagagcatatcatgctgtagaggcttgctggatctgaagagatactgcctctcccagttgtgagtcgaccttgcaactctaccggtaccaaggaagtccagaatttgatcgaaacctcattatctaaggtttgctaatggaaatattattgtttcatgattccttgatatatatgggtttcattggttttgcaacctccaccaaaggtttttgttttgccatatacttatatggaactgcacgtgaggtaacaaatttaatacttcagattgtgctgaaggattacaaccctctacaacatgagagaggttttcactcgagactgaattgtctggtgaaggatagccttcaatttgggttagcacttgctcttttttacacacaagtttttaaatttctaatgctttatttggtgtatgtatggtttctggtttcatctcctggcgtctgtcatgtcatgtttgggtgccaagcccaggactatgaccaactaataagactggattgtgaagttgtgattgattctgcagatcaattgctccggcttgtggcgcgaaggatcctcatcatcttgattcgttgagtgaaccacaaatattgacattccggggtccagaggaaaacaaggtgctgaggctgtgtagggaggagggtggagatatccaatcgttcagcttcagcgagccacaggcagcgtcaaaggagaaggcgtcgcccaggcccagcatcaccgaggagtgggaacagcttatcatcatcgacgacgacttcaccagtgccgtcacatgttctacttctagggccaaccccaagctgccgtccccagtgaaaccgctgggcctggacgacaagacaagcaggattctggagaggctggaagctcccagggcaaagaagcagagggctaccaccagcacacgcaccggcaacagcaacacaactccaccaccaccagcgtccagcattggagccggaacacagatcaagaagccattgctgccatttgaacccagcgcaagccaacctctgagacccaccttcaacaagctcaggcggaagcccactgcagctacctagcttgctgccctttttactacagtcccatgtatagagacaggaagatattatcacaccttctatcaaatgtagatatatagataaggtcactattacaaccattc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0103900, RefSeq:Os01g0103900