Os01g0104800

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Revision as of 04:16, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0104800| Description = Sas10/Utp3 family protein| Version = NM_001048302.1 GI:115434017 GeneID:4326297| Length = 6616 bp| Definition = Ory...")
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Gene Name

Os01g0104800

Description

Sas10/Utp3 family protein

Version

NM_001048302.1 GI:115434017 GeneID:4326297

Length

6616 bp

Definition

Oryza sativa Japonica Group Os01g0104800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:260530..267145

Sequence Coding Region

260562..260661,260767..260805,260895..260941,261582..261681,261925..262181
,262525..262640,263014..263098,264236..264415,264506..264649
,264740..264817,264909..265045,265138..265246,266237..266514
,266591..266657,266734..266802,266880..267011

Expression

GEO Profiles:Os01g0104800

Genome Context

<gbrowseImage1> name=NC_008394:260530..267145 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:260530..267145 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaaggagaaggggaaggggaagtggaagaggcccccgaccgtgaagccgccggtgatggccgcctccgcctccgacgacgacgagatcgacgccttccacaagcaccgcgacatgatccccctccacgaccacgatatggagtctgaggatgacctggaacaccccgtcttcgatctcgagggtatttctgagaatgaaactgatgacagcgagggagatgaggatggcaacatggacaaagctgcttatgatgaatgggatgacaaatttatcgcaaaattaaaaagagcagagagggcagtgaaacaaattgctggaggtgatgacagcatggatgaacatgaggatgatcataaggataaaaattcctggggtagaggaaaaaatgcatattatgatgctggtgaacagtctggtgatgatgaggatgactatgaagaggcacggaggatccagaaagaggaggagagcaagctatcaatgcaagattttggattagaagatggtgaaagtgatgaagaggatagagccattaaggcatccaaccatcaagtcaaagttcctgatggtgaacactcttttgaaacctatgtgaaaatgaaagaggagtttgctgtcttgtcaagagatgagaagatgggtgtgctagacagttctgctcctgaactggttggattgttgtccgagctaaaagatgcccatgaagaactaatggcgataggaccagtcaccaatgaggtgacagctgggcaaagcaaggataagggtaaaatgcagcctttggaagtgaaacgagcttgcctagctgcttattgtcaggctataaccttctacctccttatgaaagctgagggattgtctgtgcaggatcatcctgtaattgctcgtcttgtagagatcaagagtgtagtagaaaagatgaaacatgccaatgtaaactttccaagacaaaaagaggacagtgatgactattgtatgcctgatagcaatatcatggatgtggcagacatgatttctttggacaagaagaatatatatagcaatttactactacgagacaaaggtgtggaagttgcagagttgacaaagaatgaccactctaacaaggatcaccatgaaattgccaaaagaaagggcaaggatgagcatattggttcgcaaagccttgaaatgttgaaggtgagagcaacccttgaagagaggttaaaagaaaaagggctctataatttgacgcgattgaaacgtaagaaggtttcaaacaccaggacaactaatagaagtgacctgcaaacgttggatgattttgatgatgaagtgctgaaaaatactcaagccatcaaacctagtaaggtcctggtagctgcggcaaaatccaataaaaacaagtttgtctctggtgatgacgagcttccaaagcgagatgatattggtgaaagacgacgaaagcacgaattacgtgttcttgcaagagtaggagctagtacacttgaagatgatgacttgccagaggaagatgatcatactgaagagagacctaatcaattaagtgaagaaaatggcagtgatgatgacattggaccatcagagtctgaagatgagttttacaaggatgttaaaaggcggaggactgaaaagctctcgagtaaagaacagaaatactcgccgaaccctgttattgaatcactggaggaagaaactgaaggagatggcaagaggaagatctcataccagatggagaagaaccgggggttgactcgctcgagaaataagaagcttaagaatccacggaagaaatacagggttaagcatcaaacaaaacttgttaagcggggaggtcaagtgcgtggcgtgaagaagccctcaggaccatacggaggtgaaatgtctggtattaatccaaatgtgagccgtagtgttaggttcaagggctga</cdnaseq>

Protein Sequence

<aaseq>MGKEKGKGKWKRPPTVKPPVMAASASDDDEIDAFHKHRDMIPLH DHDMESEDDLEHPVFDLEGISENETDDSEGDEDGNMDKAAYDEWDDKFIAKLKRAERA VKQIAGGDDSMDEHEDDHKDKNSWGRGKNAYYDAGEQSGDDEDDYEEARRIQKEEESK LSMQDFGLEDGESDEEDRAIKASNHQVKVPDGEHSFETYVKMKEEFAVLSRDEKMGVL DSSAPELVGLLSELKDAHEELMAIGPVTNEVTAGQSKDKGKMQPLEVKRACLAAYCQA ITFYLLMKAEGLSVQDHPVIARLVEIKSVVEKMKHANVNFPRQKEDSDDYCMPDSNIM DVADMISLDKKNIYSNLLLRDKGVEVAELTKNDHSNKDHHEIAKRKGKDEHIGSQSLE MLKVRATLEERLKEKGLYNLTRLKRKKVSNTRTTNRSDLQTLDDFDDEVLKNTQAIKP SKVLVAAAKSNKNKFVSGDDELPKRDDIGERRRKHELRVLARVGASTLEDDDLPEEDD HTEERPNQLSEENGSDDDIGPSESEDEFYKDVKRRRTEKLSSKEQKYSPNPVIESLEE ETEGDGKRKISYQMEKNRGLTRSRNKKLKNPRKKYRVKHQTKLVKRGGQVRGVKKPSG PYGGEMSGINPNVSRSVRFKG</aaseq>

Gene Sequence

<dnaseqindica>33..132#238..276#366..412#1053..1152#1396..1652#1996..2111#2485..2569#3707..3886#3977..4120#4211..4288#4380..4516#4609..4717#5708..5985#6062..6128#6205..6273#6351..6482#gccgccgcctcatccgctctgcttctgctcgcatggggaaggagaaggggaaggggaagtggaagaggcccccgaccgtgaagccgccggtgatggccgcctccgcctccgacgacgacgagatcgacgcctgtaagacaacgttgacctgaccccctctctctcctctttcctctttcacctccagcatctcacgctttatccatctgtgttgggtgggtgggtgggtatttccagtccacaagcaccgcgacatgatccccctccacgaccacggtccgcccctcttccttttcatgtaccagccgtcattttttcttcctttttacttgaatctttttactgaatggatggatggatttcagatatggagtctgaggatgacctggaacaccccgtcttcgatctcgaggtaatttctattctatgctcccttcctttctctttcgggtaatcgcctcgtatatatacacatgacgatcagttatttctctactactgcctttttactctagtccattatgcctgtaccggggtccggggtgcgggtacatttcccaatcttgatattactgaataccactatagcaatagcaggcattatgatcttggtccaaaatcaaccctcaagcacaaccaacataaccggttaaaatacccccaagggaaatccagccccattttaaccttttctttaatataagttctctataatattgcacccaattaatagaaaatgtaaaaaatagttgccatattagtcaaaaagtatatttacgggatgtcaaaaccatgaaaccaccacttaatccagttttttttatcttacatgggatatgttaactggtttagatagttgagggttgttcactacacttgagctgttactgtagtataaaatatacttcactctaaggaccatgatcaccagagatttatttgtggtcttctctttagttagcagcctcttttgattatgtagttaactaactataatcagtttgttttctatctgttggcactgtttaacatttttttttatttaaaaaaagggtatttctgagaatgaaactgatgacagcgagggagatgaggatggcaacatggacaaagctgcttatgatgaatgggatgacaaatttatcgcaaaatgtaagtccaacaactatgttagcatgtatatattttttgtaggcatacagcatatactgctattcggttagcaatctttgtttggcatcaatactaaagttaataaattggctgaagtgaactaacctttgcagtttgcactaaattgtccttatttttaatgaggaaactgttgcaccatttttttggatgtatttgtttctttaatttgaagagtatttataacacctattgtgcctctagtaaaaagagcagagagggcagtgaaacaaattgctggaggtgatgacagcatggatgaacatgaggatgatcataaggataaaaattcctggggtagaggaaaaaatgcatattatgatgctggtgaacagtctggtgatgatgaggatgactatgaagaggcacggaggatccagaaagaggaggagagcaagctatcaatgcaagattttggattagaagatggtgaaagtgatgaagaggatagagccattaaggtgattgtctgaatctttttcttctttgcttcagcatggaatatggcatttaacgtcattcaaacctctttggttatctttctttacttatcagataactagttaaatgcataattgggtgtacacataactaatttcatgttaatgtccacctttatcaaagaatggcacttttgcttttgttgttacgttttacttgacaattactaactgacgtaatctctgtatataaagtaagttagtgttttcacaaatattatggtagcacgtcttttgatgatcattgaatatgaagttaacagagaatactttattatattttttgtttcatgttgactgtcaggcatccaaccatcaagtcaaagttcctgatggtgaacactcttttgaaacctatgtgaaaatgaaagaggagtttgctgtcttgtcaagagatgagaagatgggtgtgctagacaggtctgcttttattttacatatacaatgtccttttttttttctattttcctctcaaagcccatgcttgttctgtatgttcataacaatcagtggttgaagaaactttttatcattggcatgtgggtgctggtctcctggaccacatgtcactgacattggatagtatttctaatgcagatgcttgtgttggcatcaccccaatatttggtttatcatgtcgaatcaaccttgtggcattagccttgatgaaggactaaatatttagatctgcaatactttaaatatctaaattcagtaccattaagagcgacattgtctttatctgtctcagtttcgatccgtgatgatatccatatatttgaatttaatgcagttctgctcctgaactggttggattgttgtccgagctaaaagatgcccatgaagaactaatggcgataggaccagtcaccaatgaggtagtttgttgctgtgctactgaatccacatgcttgtttatgattcttgtagtgatcattgtattgctgttagttgttgtttacaattcaagacgagtaacctttttctccctgatgagacattgggaccaaactgtacaatttgccacgttttgtgtttgtgccatttttaccctccaactcctgtggcaggtttacctgttgcagttacctttttattactattacatattgtctttcctattataatttggaagtagcatagcaatggtggacatgtatcttgtgctatatgtcataccctttatataaatttgcttgtcatgtgtcactgtcactgtcattgctcatcacactcagcatttgatacctcatgctatgtcccatggcatgaacatcttctgttgatcaagggacgtggtcatattctttttagcttagcagaaatgcacgtatagtgcagtgttacagcaaacgatattctaaaatgttatatgccactctgtagcagcgttgcacgtcgcattgaactcatgtgctcagatatattcctatatataacatgtttcatgtttaccgtctgtaaatccctacagtcctatagggtttaatgatgttactctgcagtatttggacacatacagtggcatattcaataatgatacaaacaatgtggtcagttattcagtgaaataattctgcgcttataaagacattcctattttgagatgcgccaaaatcttcttcattgcaacccagaaaagaagaccttgatttatcttgcaaaacaagcaagatttaaatgactttaatcatttgatgaagcgtcatttaattctgatttgaattgttttaaagaaccatttgtagccacctcttgttcctatcccttgctctccacataggtgcatgaggacattaagtgttatgcaccctgtctataattgctgtgagcattgttgcaacacttcttttttctaatctttaatatgatcgtctgaagattacagcaaaacttactaaaggaataaggaaaaatattttaactcaatattttattcttatgactgttttatatgattgttcttcttaggtttagctctggttggtctttttataataaacactgtactgcaggtgacagctgggcaaagcaaggataagggtaaaatgcagcctttggaagtgaaacgagcttgcctagctgcttattgtcaggctataaccttctacctccttatgaaagctgagggattgtctgtgcaggatcatcctgtaattgctcgtcttgtagagatcaagagtgtagtagaaaaggttcgtttcttttctaaaatgagtcaaaaacattgttttttttatttatctatttgctgtgaggagttaatgtgtcccatcattccacagatgaaacatgccaatgtaaactttccaagacaaaaagaggacagtgatgactattgtatgcctgatagcaatatcatggatgtggcagacatgatttctttggacaagaagaatatatatagcaatttactactacgagacaaagtaaaaatagaagtggtgcttcatcctacttcatttactaataacatgacaattgaaaaattccactaactcatcatgacaataattcagggtgtggaagttgcagagttgacaaagaatgaccactctaacaaggatcaccatgaaattgccaaaagaaagggcaaggttgaatgcgaacaatatttagaatatattttagtatttattttgaaaataatgcagatacataaatgctgaacaagtatttaaattgtaggatgagcatattggttcgcaaagccttgaaatgttgaaggtgagagcaacccttgaagagaggttaaaagaaaaagggctctataatttgacgcgattgaaacgtaagaaggtttcaaacaccaggacaactaataggtgatctatggttgtgccatcacttaattatttcacatgataacttttacatatttggatgatttttacaatatgtttttatcgatatttagaagtgacctgcaaacgttggatgattttgatgatgaagtgctgaaaaatactcaagccatcaaacctagtaaggtcctggtagctgcggcaaaatccaataaaaacaaggtatgcatatataacctttgttataattaccccccatctctttaacagttttatatttggctggcttctttttaattactacaaaattctgtaatcttgttataatatgtaagcttgaaatgatttaaagtgtgctcagttaaccaaagtcttttcttgagatgattgaaattcagtactataggaacagaagtggtaaagcctttttatatactctagaatattgatgtgtaagtagctcactgcattagagactgaagtatcaatgttgatgtgtaagtagctcactgcatttgagactcaaatatattgcttcaaataagtttcctaaaagcaacacgcattttgtaaatgtgacggtagtttttgtccctggcttgtggtttaagatgagaaaactgctgcaacatacttgctaataaatagtcccatagttcacacaacctgacatgaacttgctggaggtactgtacttggtaatacaatttgaaatccttttctttttgagatatcatcagaattatgtaacggggacagtttttttttaaggttattggtgatatttctttatcagccctagtgcctggttcccattaacatgctcttgcagagttgcatacatgacttttgaattatttttagcatgtgcctcttctttggtgtgccagttgtcaaatgctcttgtactccctccgtccccaaaagactcaatttctaggtttccgtgtccaacgtttgactgtccgtcttatttaaaaaaattatgaaaaaatttaaaagtataagtcacacataaagtattaatcatgttttatcatctaacaacaataaaaatactaatcataaaaaaatttcatataagacggacagttaaacattgtacacaaaaacccaggaattgagtctttttgggacagagggagtatgttatttgtgtttatgacagttgcaacaggtgcttactcttttttttttggttctcttttggagtttgtctctggtgatgacgagcttccaaagcgagatgatattggtgaaagacgacgaaagcacgaattacgtgttcttgcaagagtaggagctagtacacttgaagatgatgacttgccagaggaagatgatcatactgaagagagacctaatcaattaagtgaagaaaatggcagtgatgatgacattggaccatcagagtctgaagatgagttttacaaggatgttaaaaggcggaggactgaaaagctctcgagtaaagaacagaaatactcgccgtaagttccattgataaagcttgataggtgttttttttaagaaatgtcacacaaatactaatttgttgtattacaggaaccctgttattgaatcactggaggaagaaactgaaggagatggcaagaggaagatctcataccaggttaagtgtttggtaccacctgttataattttaaattttctgatatgtatggctgaagaaatctaaactgttgtagatggagaagaaccgggggttgactcgctcgagaaataagaagcttaagaatccacggaagaaatacagggtaagtagcatagtatagcataagacagtggagctaatcattgagaatgcactgacttgttgcttgtgagtgttcaggttaagcatcaaacaaaacttgttaagcggggaggtcaagtgcgtggcgtgaagaagccctcaggaccatacggaggtgaaatgtctggtattaatccaaatgtgagccgtagtgttaggttcaagggctgatgtatcgaattgattacgcccaacatggaaatttttgtttgatggtaggaagtttcatggttgtaatttgccagtaacagttttgcctagagagagagagagagcatgcatggattgtctttcgattttgtacc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0104800, RefSeq:Os01g0104800