Os01g0108000

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Revision as of 04:16, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0108000| Description = Conserved hypothetical protein| Version = NM_001048321.1 GI:115434055 GeneID:4326160| Length = 8679 bp| Definition ...")
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Gene Name

Os01g0108000

Description

Conserved hypothetical protein

Version

NM_001048321.1 GI:115434055 GeneID:4326160

Length

8679 bp

Definition

Oryza sativa Japonica Group Os01g0108000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:421539..430217

Sequence Coding Region

421599..421748,421910..421972,422069..422379,422524..422620,422697..422774
,422871..422930,423019..423123,423743..423856,424145..424186
,424380..424496,424568..424755,425514..425785,425869..425990
,426118..426160,426265..426356,427331..427379,427623..427693
,427793..427912,428586..428674,429266..429311,429926..429973

Expression

GEO Profiles:Os01g0108000

Genome Context

<gbrowseImage1> name=NC_008394:421539..430217 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:421539..430217 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgccctcgcggggcgcctagccgcggcctccgtctccgaccacccctcctcctcctccgccgccgccaccgatggggccaacgccgaccacctcctccacgtcatgcgcgccgtcgagggcgccgaggccaccatccgcaaccagttggaagagaataatcgcctcaaagaggaactgatgcagaaaacgcgacaattgcagaggattcgggaagatgctgcatcccaagcttcttccagtggagtagcccaagaccgccgctcattcgttgctactaagatggatgcgtcaaggtcacctgccagcgctgcgtcctcagataattcccgcaccccctctgcccttcaccacaatggcgcattcgaaagtggagagccttcaatgcagcagaccatcaggcaaaacaatgccctgtccaatggagcatctaaaagatcatcaggggagcagcctgccctcgacagcgctgccgtctcacagttctctactccatcctcccattccctttctcctactaggcatagaaaagaaggcgagcatgatcctaggttgaacctagctggacaggggttattgcctgcttcagagatggcctcgaacatgtcatggaagcatgatcttactgctaagatcaaagaaaatgaggaagagattgcgcaattaagaaaacatcttgctgactactcattgaagcaagcacggatactcgatgataaatatatgttggaaaggcgcattgctcaaatgcggatggcatttgatcagcagcaacaagatttaattgatgcagcatcaaaagctttatcatatagacaagatattattgaggaaaacatccgtctggcatatgcagtgcaggctgcacaacaagaaaggacaactttcatatcttcgttgctgcctcttctgtctgaatatgaaaacctgcagccttctgttcttgatgctcaatccatcgtcagcaatttgaaggttttgtttaagcatctgcaggagcaacttattatcactgaggagaaattaaaagagtcacgttatcagattactccatggcaaactgaattggcgaatgatgccactcttcctgtacactcacctacggatcctcttggaaaagcattggtgacttcaaacaaaagcaacctcgatattgtgacccagacaccgtaccctcatatacaatctccaatgtcttcccctgttcaagttagaggtgattggggtgtagcagggaacaaaaaccgtcaagtcattccaactgatgttcctccaagaaatgttgatcatggtgacatgggaagaaactctctttcaagcaggagggatgtttcttctcaagtatctcagcatgatccacattctgtcccattggactttgagcccgagaatcaaaacccaccattcaagcaccttagtagaagtgacgtatcggatgcttcggagggtgctgaagtccaacatgcacgagaacattctgctcattggggtcatggagactcagttaatttggtatccggcattgaggatacaaacccttcatatccgtatcttcctactgttcttgaggagcctggatcttctttctctgaagctgctgaggatgatccactgccaggcatagagggccttcgaatcacaggtgaagcttttcctggaagagaactccaagcaagcgggtactccaccaatggaaccaccagttgtaattttgagtgggtgcgccatttagaagatggctccgtaaatttcatagaaggagcaagacaacctaactatttggttactgccgatgacgtggacacattactagctattgaagtacagccccttgatgatagaaaaagaaagggggaaattgtaaggttttacgctaatgatcaaagaaaaattacttgcgatcctgaaacaaaggagcttattaagagaactcttgaaactggtcatgtatcttatgaagtccaactacctgtgaaatttttagatatgtgggaaccagctattttggcaataaagagggaaggctacagtattaaatgtactggtcagcgtggtgttgttctcacagagaaatttcagcaagcaacttctattaatattccttacgggcgtccgacagagttcttgattacatctgctgatggtgttgaatataatttaaagcctgcagaaaatgcactgccgcgggataccattgttctggttttaagattgttcagaattatggctgttgagaagaggagaggaagaaagaagagccttttcttcaagtag</cdnaseq>

Protein Sequence

<aaseq>MDALAGRLAAASVSDHPSSSSAAATDGANADHLLHVMRAVEGAE ATIRNQLEENNRLKEELMQKTRQLQRIREDAASQASSSGVAQDRRSFVATKMDASRSP ASAASSDNSRTPSALHHNGAFESGEPSMQQTIRQNNALSNGASKRSSGEQPALDSAAV SQFSTPSSHSLSPTRHRKEGEHDPRLNLAGQGLLPASEMASNMSWKHDLTAKIKENEE EIAQLRKHLADYSLKQARILDDKYMLERRIAQMRMAFDQQQQDLIDAASKALSYRQDI IEENIRLAYAVQAAQQERTTFISSLLPLLSEYENLQPSVLDAQSIVSNLKVLFKHLQE QLIITEEKLKESRYQITPWQTELANDATLPVHSPTDPLGKALVTSNKSNLDIVTQTPY PHIQSPMSSPVQVRGDWGVAGNKNRQVIPTDVPPRNVDHGDMGRNSLSSRRDVSSQVS QHDPHSVPLDFEPENQNPPFKHLSRSDVSDASEGAEVQHAREHSAHWGHGDSVNLVSG IEDTNPSYPYLPTVLEEPGSSFSEAAEDDPLPGIEGLRITGEAFPGRELQASGYSTNG TTSCNFEWVRHLEDGSVNFIEGARQPNYLVTADDVDTLLAIEVQPLDDRKRKGEIVRF YANDQRKITCDPETKELIKRTLETGHVSYEVQLPVKFLDMWEPAILAIKREGYSIKCT GQRGVVLTEKFQQATSINIPYGRPTEFLITSADGVEYNLKPAENALPRDTIVLVLRLF RIMAVEKRRGRKKSLFFK</aaseq>

Gene Sequence

<dnaseqindica>61..210#372..434#531..841#986..1082#1159..1236#1333..1392#1481..1585#2205..2318#2607..2648#2842..2958#3030..3217#3976..4247#4331..4452#4580..4622#4727..4818#5793..5841#6085..6155#6255..6374#7048..7136#7728..7773#8388..8435#atttccactctctcctctcctctcttggactccactcgccctcgcgactccgcccccgccatggacgccctcgcggggcgcctagccgcggcctccgtctccgaccacccctcctcctcctccgccgccgccaccgatggggccaacgccgaccacctcctccacgtcatgcgcgccgtcgagggcgccgaggccaccatccgcaaccaggtctacctcttatcctttcctacccacgaacctacccttgcaattccttcctcatcgcctcttccacaattcccctcctgtcccactcccaactcgccctattttatttccgcacaccactgaagtagctgattttgggtttccatgtttttcttttctagttggaagagaataatcgcctcaaagaggaactgatgcagaaaacgcgacaattgcagaggattgtaagcctgctttttttttcttttccttttagctatgtatatgcacaaaatgtagccatgtagtaacacccagcgtctttcaatttttgggatcagcgggaagatgctgcatcccaagcttcttccagtggagtagcccaagaccgccgctcattcgttgctactaagatggatgcgtcaaggtcacctgccagcgctgcgtcctcagataattcccgcaccccctctgcccttcaccacaatggcgcattcgaaagtggagagccttcaatgcagcagaccatcaggcaaaacaatgccctgtccaatggagcatctaaaagatcatcaggggagcagcctgccctcgacagcgctgccgtctcacagttctctactccatcctcccattccctttctcctactaggtaactcacctgaccacactccatgttttccctaccatttttgttgccggggaaaaagaacaacggtaggccgcaggccttccttttgtgggatggtcttgtttgcttgcgatatcctgacaaaatagaagcccttccatacaggcatagaaaagaaggcgagcatgatcctaggttgaacctagctggacaggggttattgcctgcttcagagatggcctcgaacatgtcatggaagcatgtcagtataagttgcttgcaaatgtcatttgtacctgtatcatccatcatccctaatgaagataattcctatgcaggatcttactgctaagatcaaagaaaatgaggaagagattgcgcaattaagaaaacatcttgctgactactcattgaaggtggcctttttttttttttttacaaatggaaagtacttcatttttgttgcctttccccttattatcttgtacctgactacataatatccctgacagcaagcacggatactcgatgataaatatatgttggaaaggcgcattgctcaaatgcggatggtaggccatttctttttatcataaactattagtcacttggagtaactagtgagtatatcatattatctcaaaaaaaaaaatctttcaggcatttgatcagcagcaacaagatttaattgatgcagcatcaaaagctttatcatatagacaagatattattgaggaaaacatccgtctggcatatgcagtgcaggtagttctctgtcactggaaatttctttgaaattcgattagtatgtttgtgttatattagtcaggcttattatgcttccagtcatacttcaatacctttctgcaaaatttaaaaaacgtgcacagaaatgatcataacacgtgtagtgctttaatgaatgttgttttctgtgcttacttgaccttgtcccttggtgttatagctcaaaattgttaggaacgatgcagaatgatatatctgttttttaatccatatatttacaacagtttttagaaccagctgtttgatgcaaggtcttgactaatggattttcctgtggtctataccaaggtagtatttgttgaaaatttctgtttatacctctatcctatggaatacatcttaacattaggttggatcattcattgccatggcccatggtgatgttcattttggatatatgcagctcttactattctatgggtacatcttaacattagataggatcataaattgccatggtgatgttcattttggatctatgcagctgttactataagataaatcagggcttgtagttaagattgtagttgttcttctatactatactgagttttgcttatgtcactatatgctataggctgcacaacaagaaaggacaactttcatatcttcgttgctgcctcttctgtctgaatatgaaaacctgcagccttctgttcttgatgctcaatccatcgtcagcaatttgaaggtttactcttttttctaatattttttctgccgtttcgtgggggcaacgtcgtatacgttagcaactagaaataaatttcactactgaatgcaaatggcaaaaaagggaaaagagatcaatgacattaatttcatctgagaaatatgccatactttcattattgaaaaagcaacctaagcatttttcttttttaaaaaaaggttcataacacatgatcaacacatcaagttgcttctgttcttgtaccttattgagttgacttttcactaaatgtgtccctttctgcaggttttgtttaagcatctgcaggagcaacttattatcactgaggtgagtctcaataagctcaagcaaatatgcatttacttttcccataaagaaagaagcgatttattttcagagacactaggggtgggcagtgcaagtgtacccaatagtgtccctctcgtgcatgcaaacttactaccgaaaattttctgactgaattttgaagtttccttttgtgcaaatttaaatggtgcaggagaaattaaaagagtcacgttatcagattactccatggcaaactgaattggcgaatgatgccactcttcctgtacactcacctacggatcctcttggaaaagcattggtgacttcagtatggcactatactccttgagttcttgtcataactattgcagaaatgctctaacctatttactttttcagaacaaaagcaacctcgatattgtgacccagacaccgtaccctcatatacaatctccaatgtcttcccctgttcaagttagaggtgattggggtgtagcagggaacaaaaaccgtcaagtcattccaactgatgttcctccaagaaatgttgatcatggtgacatgggaagaaactctctttcaagcaggtagtatcttctttaagtgcttaatactgtaccttcctgactgactttattctatctaccagcgttgccgttgcgcatgatgaaataattccattcttaaggtagcagctatgattgccagttcttgacctatgtaaattggctagcagcttctagtagtcattactcattacttgaattgcttttactaatttctgatatgttacactctactttctttagtatgctacaatcatgaaaaattcagggatgtgggaatttgctacaagaacatttcatttctttttgagaaaatccaagaaatatcattgaaaagctctcaattccaataaatgccatcgacaagtgcgagttccatgaaatgccatcgtgcaagcgactttgtcctagaaatgccattgccattagggtttcgtccatcccacaccgttaaatgcgttgtttatcctatagcacttaacggaggactgctaatggaaccctaacggcgatggcatttctgggacaaagtcgcttgtacgatggcatttcatggaactcgcacttgtcaatgacatttcttggaattgagcgtttgtcaatggcatttcttgaattctctttgttttttgtcgctgccgcactattttcaaatagctaaactgtttttgaggaagatttaataatcatttttctagtcaataattttttttattatatagaggcatcacaagaacattaaacgtggtataatttatatttaatagcttaaaattcaggagggatgtttcttctcaagtatctcagcatgatccacattctgtcccattggactttgagcccgagaatcaaaacccaccattcaagcaccttagtagaagtgacgtatcggatgcttcggagggtgctgaagtccaacatgcacgagaacattctgctcattggggtcatggagactcagttaatttggtatccggcattgaggatacaaacccttcatatccgtatcttcctactgttcttgaggagcctggatcttctttctctgaaggtaattactattagaaataaatttatatatttgtttaacactaatgcaatctgatgatatattcctcttttatgaatatgtagctgctgaggatgatccactgccaggcatagagggccttcgaatcacaggtgaagcttttcctggaagagaactccaagcaagcgggtactccaccaatggaaccaccagttgtaattttgaggtgctcttcgtaattcatgtcattccacattctggataaaagaacttctctaccttatattgttcatatgagtttcaaactttcatggcaatctcactgtccaaaaaatatattttcctatgtgcagtgggtgcgccatttagaagatggctccgtaaatttcatagaaggtacttttttttgtcactttagctctgtgagcttgtcacttgcattaaataggattctatgattttcaagaaagttgggaaataaatgttttctgttggcataggagcaagacaacctaactatttggttactgccgatgacgtggacacattactagctattgaagtacagccccttgatgatagaaaaagaaaggtaattattttgcgatgtggctgattttttttttatgtgtgatacaatgttgcattccccaaaacttctggtaattatgaggctatatgcctatatatcttttctatgccttctgaaatggcactaaagacaatactagctgtttagcatccttaattccatggagtcatggagactgaaaaagcgcatctaacgtacaggattaaacttgaaatacaagaactgaggtatttatataattgtatttctcgaatgctactgaacccagcagttaaacctttacttcttttatgttaatcaccaaagtagctctatatttctctttttgctcatttaccagttaggtcttaatatcagattagcccagggcactatgatcagtagttcatgtttctggccgctgtcaatactgacattgattttgctattccatttatatgtggaaaatatctgtattaaacccttattcacgttcgtctaatcaccctgaactatgaaactattgacctgaaactacctccttagccctgaaaccatcctggttttcactgttatggatccccttactttatttctagtttaacctccaatcctccatcaaaatactcttatatataaaaatcaccaccgtatcagcacaaaccaggtggttgggggctagggggtattttgtactgtttttagttcagggttgcaaagtaaatggtttcatatttcatggtgaattaggcaatcggaaacttcatggttgtgatttggacctttccctttatgtttgtggagatccagagttctagttaatgatacataatccaacctttgatgtttatggagtttctttgtttggtttcactgggacaccatgtaaaatgagttaggtctgttgtacagttaaatttcttatgattaaactgattttctgttattacttccaatgttaagattcgtccttttgtttgagtttcctattgcagggggaaattgtaaggttttacgctaatgatcaaagaaaaattacttgcggtgagtatatggaacctttaattcccaaaagagtgattatttctggtgatggagtgtttgacataattccactcctagagggaatgttgaatcccctatatatctaattaccaaaagagtggtacttctgatattctgtttaactaataaaagttttccaattatgtgatgattatttaaactaaatagcagcagcacatgttttgcacccaaccgactttgaataaaccatcttcaatgcagatcctgaaacaaaggagcttattaagagaactcttgaaactggtcatgtatcttatgaagtccaactacctgtatgttctctattacttggaattatctatcaaaagcattctcactaatttcttatgatttcatgcaattatttcaaatgttaaatcttcttatagcaggtgaaatttttagatatgtgggaaccagctattttggcaataaagagggaaggctacagtattaaatgtactggtcagcgtggtgttgttctcacagagaaatttcagcaagcaacttctgtacgtccttattccgtattctttagcagtacatcatttgaatttcaggaagtagatctcattctaaaattgtgagcaaactctgttggttccttcagtacctgggtagcatgttggttcacccaaaatgatggaaataaacccattgtagatggatgtaaattgatggttaccttgaattctggccagagacaggttttgttatctcatatggtttcaagatctcagatttatgtctgagatatggttaaccgctagattacactgcatctagacaaacgtcatgtctttctttgatgcattgtctctcatgctatacatgaaaagaaaaatgtaaaaaataggccatgatctggcctatttctgttgacctaaggaaatgggaacagttgagcttctttcctgatgaattgtcttcacatgcttgatggacccacaccgaaaaatctggacaggacgattaaatggtgtgcacataagtcataagtgtgatactgcaagtactatactgagacaaattgtctccgataataatttttttctgctgcttttgctaattaaccatattataatttttgttctgcaatcatgtttgtgtttttttgtaaatcattgctgtagacatacaaaaatgtggtatgattgacaacaacttttgttctgtcttttccagattaatattccttacgggcgtccgacagagttcttgattacatctgctgatggtgttgaatataatttaaagcctgcagaaaatgcactgtgagtacccaatcgagctagtgtttgcatcattatcagcagcccaagatctatgaataaattaacattagtattcattattccttacactatatgtgtcttgatgtgcaactgtacttctgatttagcagcatggctcccccctactgctttccctacaaacaactctatgggtcatcacttcttgaaacatcagagttaaaaatatgctgcatatgtctaatagttacttcttaaaactcggaaggaatgcctcaaggtcagcagtgccagactgccagctcatcgatcttgtcacaaagcccatgttgttttcagtaatgtggtcttctatagctgtctgatcagcgtgtgcaagccgacctgaccgtgccctagtgtgttcattcttatgtctttgaaagcatagcaatttaggatatacttaccttctaagtgtaatcagtggaggtttataccaaacttgaattgaacaccctgtccttggtcttttactttattactgctgtgtttattttagattaatgccaatcataattcataacgaacatacataaaatactgcttatcttgtgttctccaattttgcaggccgcgggataccattgttctggttttaagattgttcagaattatggtatgagctcgttatctcttgtgcaagacatatattagcacctcccttcattatctttatcttcattcaacatcatcgagtgggtcatcatgggatgatggccctccactctattcaagttcaaaaccgagtattatttgacgattagcatgtttgaagaacccacagtagcatttttctcaagagaaaaaaagatggaaaaaaaaatatagagaagttaagtgtacgctatcagcattcactagtaggctactagttgtgtggctggctgtgctgttcggcttttgttgttacaaaggctaatattatctttggttaattaagtaggcggaggttaattttacagccctctgtttattcttcaaaagaaacggcattcccagccatcatggggatctcttatatagtagcactttatctaaagatagggcactatgaattgtttgtaaagagctgtgttgtcaaagttcatttcttgtgttttcccccaaggtagcatatctgaatggtgactaacaggttaaccgtagagccaggattagctgcctgacttgatgagaatatgtcgtctcacgttccttaaatactgatgtgaaacatcatgcattttgcaggctgttgagaagaggagaggaagaaagaagagccttttcttcaagtaggtttggctcctataccgtggtgtataatttgtattcgtgattggctggatgtatgtaattaagcgggtgataggtttggcatattctttcggctgtatcttctgctgtaaaggaccataggcgatttaaacacaagggccccaggtgatgggagttttcttcttcttatttttttcccttattccttttagaaacatgagttttgtcgttgcaagggatggaagcgtgccgctgattagaattg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0108000, RefSeq:Os01g0108000