Os01g0117200

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Revision as of 04:18, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0117200| Description = Similar to ARK protein (Fragment)| Version = NM_001048384.1 GI:115434181 GeneID:4326099| Length = 3988 bp| Definiti...")
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Gene Name

Os01g0117200

Description

Similar to ARK protein (Fragment)

Version

NM_001048384.1 GI:115434181 GeneID:4326099

Length

3988 bp

Definition

Oryza sativa Japonica Group Os01g0117200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:968340..972327

Sequence Coding Region

968487..969664,971191..971363,971485..972305

Expression

GEO Profiles:Os01g0117200

Genome Context

<gbrowseImage1> name=NC_008394:968340..972327 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:968340..972327 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccaactccattgcaatattccgtcgttctactacgtacggccccttgcagaaagccgctttaacaactatctgctgtatgcttgcagttgctgcagggccaaacccccaggagtgtcttcctttctcctgtggtgatcttggcaacatatcctaccctttccgtctccaaggcgattcacgtcagtgcgtttctactcctcgtccatggtacaacctctcctgcagcaggggcaaggccaccatccatatcaacacaagaaagtactatgtgattagtatcaactatactcgtgagaacttcttggttgtggatgccaccatgcagctggatgatgatacaaacggcaccagctgccctcttcctcgctctgatcaccttccttacatgatttactggtctgatctgtcttcaatcgattcttatggttttaaagatttggtcactgcttcagacacttgggcatgctttgtgaattgttcccgagcaataacgaatgatagccggtacaagcccgttacttgcctgagtgggaacaattcattcccttatgtgtatgtctatatttatgatgattatggttgctgtcctgtcaaaaggcttcaaccttcctgtcgatatttggggatgattccctttgattacgtctatcaaccagggtcatatgatgatgatatcatgtcaaatgtactacaaagtgcaagttacagagatatcgtgggattcataaggaagggattccgcgttaattttcccctttataataacgaccagagggctcccacgatcgtcgagagatgcctaaacaattcaatgagctacttcaaggatcagatatctggagcaagcatcccgcatctaactcgcgctcttttctggactgagatacacttcgtacaatgcgtatctactaaccacgactacacaataaagttattttcggttgtgataaccatagtatctgctattgatgtcaccaagctacttttcgttctatgcaggttcgtgttggcaccgctggtggtactcacatttcttgcccacaagtactggaaaacaaggatagcgatcgatgcagtggagaagttcctccggatgcaagagatgctaggtccaaagaggtacgcctacacagacatcatagcaatcacaagccatttcagggataagttgggccaaggaggatacggatctgtatacaagggtgtgcttctccctggtgacatccatgttgccatcaagatgttggatggaaaatccgactgcaacggagaagacttcatcagtgaagttgccaccataggcagaatccaccacatcaacgtggttcgtcttgtggggttctgctccgaagaaatgagaagagctctggtttatgaatacatgcctagaggatctttaaacaggtatatcttctcatccgagagaagcttctcgtgggacaagctcaatgagattgctctgggcattgctagagggatcaactacctgcaccaagggtgcgagatgcagattctacactttgacatcaagccagacaacatccttctggatgacaactttattccaaaggtcgctgatttcggccttgcaaaattgtacccaagggagaagagctttgtgtcagatagggctttacgaggaacatttgggtatatggctccagagatggcatgtcgtagttttggcgtcatatccagcaaatccgatgtttatagctttggaatgctgctgcttgagatggctggaggtagaaagaacgcagacccaaatgcaaactcaaattcgagtagggcatactacccagcatgggtgtatgaccagcttatagtagatcaacaagttgatgagatatctagtgctattgacatgcatgagaaagagaggaagctgtggcttgttgtgttttggtgcatccagatgaaatcatatgatcggccaacaatgagtgaggtcatagagatgctcgaaggggatgttgatgcgttgcaagtgcctccgaggccatttttctgcgatggagatagcacgccgcctcctcctgtgcctgtgatggattcaatttgcctttactcctccgagttgactgcgatctcagaggaggaggatgtggatggaataactcaactagatagtagttgcttgctaggctatgagcgaagtatttga</cdnaseq>

Protein Sequence

<aaseq>MANSIAIFRRSTTYGPLQKAALTTICCMLAVAAGPNPQECLPFS CGDLGNISYPFRLQGDSRQCVSTPRPWYNLSCSRGKATIHINTRKYYVISINYTRENF LVVDATMQLDDDTNGTSCPLPRSDHLPYMIYWSDLSSIDSYGFKDLVTASDTWACFVN CSRAITNDSRYKPVTCLSGNNSFPYVYVYIYDDYGCCPVKRLQPSCRYLGMIPFDYVY QPGSYDDDIMSNVLQSASYRDIVGFIRKGFRVNFPLYNNDQRAPTIVERCLNNSMSYF KDQISGASIPHLTRALFWTEIHFVQCVSTNHDYTIKLFSVVITIVSAIDVTKLLFVLC RFVLAPLVVLTFLAHKYWKTRIAIDAVEKFLRMQEMLGPKRYAYTDIIAITSHFRDKL GQGGYGSVYKGVLLPGDIHVAIKMLDGKSDCNGEDFISEVATIGRIHHINVVRLVGFC SEEMRRALVYEYMPRGSLNRYIFSSERSFSWDKLNEIALGIARGINYLHQGCEMQILH FDIKPDNILLDDNFIPKVADFGLAKLYPREKSFVSDRALRGTFGYMAPEMACRSFGVI SSKSDVYSFGMLLLEMAGGRKNADPNANSNSSRAYYPAWVYDQLIVDQQVDEISSAID MHEKERKLWLVVFWCIQMKSYDRPTMSEVIEMLEGDVDALQVPPRPFFCDGDSTPPPP VPVMDSICLYSSELTAISEEEDVDGITQLDSSCLLGYERSI</aaseq>

Gene Sequence

<dnaseqindica>2664..3841#965..1137#23..843#agcttggcagttgcatgaatgcatggccaactccattgcaatattccgtcgttctactacgtacggccccttgcagaaagccgctttaacaactatctgctgtatgcttgcagttgctgcagggccaaacccccaggagtgtcttcctttctcctgtggtgatcttggcaacatatcctaccctttccgtctccaaggcgattcacgtcagtgcgtttctactcctcgtccatggtacaacctctcctgcagcaggggcaaggccaccatccatatcaacacaagaaagtactatgtgattagtatcaactatactcgtgagaacttcttggttgtggatgccaccatgcagctggatgatgatacaaacggcaccagctgccctcttcctcgctctgatcaccttccttacatgatttactggtctgatctgtcttcaatcgattcttatggttttaaagatttggtcactgcttcagacacttgggcatgctttgtgaattgttcccgagcaataacgaatgatagccggtacaagcccgttacttgcctgagtgggaacaattcattcccttatgtgtatgtctatatttatgatgattatggttgctgtcctgtcaaaaggcttcaaccttcctgtcgatatttggggatgattccctttgattacgtctatcaaccagggtcatatgatgatgatatcatgtcaaatgtactacaaagtgcaagttacagagatatcgtgggattcataaggaagggattccgcgttaattttcccctttataataacgaccagagggctcccacgatcgtcgagagatgcctaaacaattcaatgaggtgagtctgctgcttcctgtatactatattacttccacttcctccagagtttggttttgtctgtgtacgttccccctcatttatcccgttcaagctacataattaatggtgtaattttcagctacttcaaggatcagatatctggagcaagcatcccgcatctaactcgcgctcttttctggactgagatacacttcgtacaatgcgtatctactaaccacgactacacaataaagttattttcggttgtgataaccatagtatctgctattgatgtcaccaagctacttttcggtacgtgtcaattaattacccgcatttatataatcatcacatccatgacacgactttatattgtatttcctccgtcccataaaaaacaaatatagacactggtggagaaagggtttttactcccggttcgtaacccccctgtagtcccggttttccaaccgggactacgaatccgggactaaagatagcgatctttagtcccgggtgaaaaaaccgggagtaaaaatccatttttaccgggactaaaaagactagatccggttgctctttattattttcttttcttcattgtttttaatcaaaatcacaaatcaatcccgttcccaaaatcacaaatcaatcattctcaaattgcttccaaatccacaatcgatcatctcaaatactcaaatacatcacaaaatctcaaaaaaaaattacatcacaacttctacaaaattatcaaatattcacatcacacacaaatcaaatacatcacacaacaatcagatccaatcaaatacatcatacaacaatttcagattcttaaaaaaaaaaaatccaccgcctcgccggccggccctccgcgccccgccgccctcgcgccgtccgccgccgcaggccgccgtctcaccgcgcgatgcgccgcccgccgcgcggcctccagccgccgccgtgccggccggccggcccgtcgcgcccgccgtcgcgcggccgccagccgccgccgcgccgggcctccgctccccgccgccctcacgccggctgccgccgcaggccgccgcctcaccgcgcgacgcgtcgccgccgcgccggccggcaggcccgccgcgccccgccgccctcgcgccggccgccgcctcaccgcgcgccgcgccggccgggcctccgcggccgacctgccatcggtctgttagagaggagaggagaaggagaggaagggttgaggagaggaagagataaggttgaggagaggaagagataaagttgaggagaggaggagaggagttaaaggagagaaggaaatacctcgatccaattgcgcatgcctctccgatctctgcgtcgatcttttttcccggttgcgcatgcctctccgatctccgcatcgatcttttttcccggttggtaccaaccgggactaaagatagatctttagtcccggttagtaacaccaaccgggagtaaagcgtatgacgatcttttttcccggttggtaacaccaaccgggactataaatggatcatcaaccgggactaaagattgaaaagtagcatgaagctttcaaaccgggactaaagatgtttttagtcccggtttttaatacagccgggactattgtgaaatctggtcgaccgactaaagatggtttctccaccagtgagaatcggatgtgacatattatagtatgataattctggacgtatgtatgtttagactcgtagtattaggatatgtcatatctggtactaggttggttttttatgggacggagggagtacgtagtataatctaactcatatatggctgccgacttgtttgaaaagttctatgcaggttcgtgttggcaccgctggtggtactcacatttcttgcccacaagtactggaaaacaaggatagcgatcgatgcagtggagaagttcctccggatgcaagagatgctaggtccaaagaggtacgcctacacagacatcatagcaatcacaagccatttcagggataagttgggccaaggaggatacggatctgtatacaagggtgtgcttctccctggtgacatccatgttgccatcaagatgttggatggaaaatccgactgcaacggagaagacttcatcagtgaagttgccaccataggcagaatccaccacatcaacgtggttcgtcttgtggggttctgctccgaagaaatgagaagagctctggtttatgaatacatgcctagaggatctttaaacaggtatatcttctcatccgagagaagcttctcgtgggacaagctcaatgagattgctctgggcattgctagagggatcaactacctgcaccaagggtgcgagatgcagattctacactttgacatcaagccagacaacatccttctggatgacaactttattccaaaggtcgctgatttcggccttgcaaaattgtacccaagggagaagagctttgtgtcagatagggctttacgaggaacatttgggtatatggctccagagatggcatgtcgtagttttggcgtcatatccagcaaatccgatgtttatagctttggaatgctgctgcttgagatggctggaggtagaaagaacgcagacccaaatgcaaactcaaattcgagtagggcatactacccagcatgggtgtatgaccagcttatagtagatcaacaagttgatgagatatctagtgctattgacatgcatgagaaagagaggaagctgtggcttgttgtgttttggtgcatccagatgaaatcatatgatcggccaacaatgagtgaggtcatagagatgctcgaaggggatgttgatgcgttgcaagtgcctccgaggccatttttctgcgatggagatagcacgccgcctcctcctgtgcctgtgatggattcaatttgcctttactcctccgagttgactgcgatctcagaggaggaggatgtggatggaataactcaactagatagtagttgcttgctaggctatgagcgaagtatttgaatctagcaattagcgttcactaatattaattttacactagatggagtacaagaccattgtaagctagtccagcttgaacttatttacctagcagattgaagttgttttacgtgtatgtaaaatgactatgaataaactactcccccc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0117200, RefSeq:Os01g0117200