Os01g0125900

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Revision as of 04:19, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0125900| Description = Ubiquitin-conjugating enzyme, E2 domain containing protein| Version = NM_001048429.1 GI:115434271 GeneID:4326008| Le...")
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Gene Name

Os01g0125900

Description

Ubiquitin-conjugating enzyme, E2 domain containing protein

Version

NM_001048429.1 GI:115434271 GeneID:4326008

Length

5958 bp

Definition

Oryza sativa Japonica Group Os01g0125900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:1420693..1426650

Sequence Coding Region

1422344..1424260,1424338..1424472,1424568..1424712,1424788..1424990,1425183..1425252
,1425356..1425495,1425620..1425931,1426272..1426541

Expression

GEO Profiles:Os01g0125900

Genome Context

<gbrowseImage1> name=NC_008394:1420693..1426650 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:1420693..1426650 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaaatctaccaaatggctcagcaaatatagctgagaagaaccaggataatgagatgtctacagatgctggtgagcctgaagaagtagcagatatatttatttatagagaagatgttgtcagcttgaagtcaaaagaggacacccgtgggttggttttggaggtagcaggagaatatgattctgaaggtagcatcactgatgatgatactgatactgaggagcatgaacacaaaagttctcataggactgaaaatggtggtgctgatggtgataatgtcagtaatggagttgatgttgatagtcagagttcattgcctgataacaaggttagggttctatggattgatggtgtcgagaagacggaagatattgacagcgtggttgtcatggacagaagtttccttcatggagatatagtggcttctgccacagatccaactggtcagatgggacttgttgctgatgtcagccttgtggttgatttgcaaggacctcacggagaaataataaagggagtatcctctaaagatttgagacgcatcagggaatttaacgtaggtgattatgttgtctctgggccatggcttggtcgagtcgacgaggtgttggataatgttaatgtgttatttgatgacggctccgtctgtaaagtagccagggcagatcctatgcggctaaggccagcattggggccactgaatccaaatgcaagctgtcccttttatcctggacagcgtgtcaaggcagtgaattcatctgtttacaaaacatccaggtggctcaatggactatggaaagcaagtcgtcttgaaggcactgtcacaaaggtggaaacagttgcagttatagtctattggattgcatctgcacactttgccacgaatcaagaatctgttcctcctgaagagcagaacccaaaggatctgactcttttatcttgtttttcatatgcaaattggcaattaactgattggtgtcttcctaaccaatacacatcatcgtgtactgatgattctttgattgaaagttcagaaataaaagactctgatgacattcctgaatccagtgatgttaagacagaactaacgcagaagactgatatggatgaaaaccctgggaggatggatggagattcttctgctgatggatcaaatatggtttatgaagataacacatgcttagccaaacaatcagaatcaggcactattgcatcaaccgttccaaaggagggatcacaggacaatgcaacttacaggaaaaaacttaggaaagtttttgtcaaaaaggataaaagaacaagaagaagagacgagagctttgaaagggctctgcttattgcaaatacatacacgaaggttgatgtgatctggcaagatgggacaaaagaatgtggagcaagctcaacattgctcatcccgatccacagtccaaatgaccatgaattctttccggagcagtatgtcgtggacaaggttggtaatgatgttgatgattcttctgaaacaaaacgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgcatctgtatcatggtttaagccttcattacacccagaggagcccagagaaatcgagtgcaatgaaattgtgagtgcatatgaattggatggccatccagattatgattattgctatggagatgttgttgttcgcttgccatctgtttcactgcctgttgaatcaaccaatagggagaacaccatggaactggataatgtaaattctacagaagtatcggcaacccctgtagctgatgcagaggaacagtttccacagaaggaatccagtttggaatttactagcctttcatgggctggtaatatagttggttttgaagacggtgatattatagtcatttggggcgatggttcagtgtcaaaggttggtccacatgaaatatatgttgttggtcgtgaagatgatggtgcctcactagatgatggaactgccagtgatggtgctagctgggagactgttgatgacaatcaaacggatttgcctgatgattctgcacaggatgattcgcaaaatgtagcagatagtaacatcgaaagggaaaacggttcatttaattcgcaggatggaagctctgttgcaactggtccactttctgttgcttttggctttgtgactcggctcgcgagtgaactctttgctcgagaatctggtgatgatattgataaagctgagggggagaacaatgtggcaacatctgagagtaccgttgtaacaacaaatgacgcttccggtgggaagtctgtagatgttgatatggctgacaagcctggagattcagatggcttcaaacactttgatgttcagcagtgccctccagaccatcattacctggaaaacatggcgcagggcactggtggaagaaagtgggtaaaaaaggtacagcaggaatggaacatacttgagaaaaatctaccagattatatttatgttagggtatttgaggatcgaatggacctcataagagccgtgattattggagcaagtggaacaccataccaagatggtcttttcttcttcgacttccaccttccacctgagtttccacaagttcctccgtcggcgtactatcattctggaggtttgcgcgtaaatccaaacctgtatgtggatgggaaggtctgcttaagtctcttgaatacctggacgggcagagggaatgaagtatgggatccatcatcatccagtattctccaagtcctggtttcacttcagggcttggttctaaatgaaaagccttattttaatgaagctggctatgagaagcaagttggtactgttgaaggggagaagaatgcattgccatataatgagaacacatatctgctgagcttgaaatccatgttgtatatcctgaggcgacctccaatgcatttcgaggactttgcaaagagccacttctccaagcgtggcaaatacattctcaaagcttgtgaggcctatttgcaaggtaatggggttgggacgctcacagatgatgcctgcaccaccgagagaagcaaagaacagccatgctcggtgggtttcaaactcgcattagcaaaaattatgccacggttgattactgccctgaaggacgctggagcaaattgtgaccaatatgagcaccttgggaaaacggaaactgctcaagaacactga</cdnaseq>

Protein Sequence

<aaseq>MENLPNGSANIAEKNQDNEMSTDAGEPEEVADIFIYREDVVSLK SKEDTRGLVLEVAGEYDSEGSITDDDTDTEEHEHKSSHRTENGGADGDNVSNGVDVDS QSSLPDNKVRVLWIDGVEKTEDIDSVVVMDRSFLHGDIVASATDPTGQMGLVADVSLV VDLQGPHGEIIKGVSSKDLRRIREFNVGDYVVSGPWLGRVDEVLDNVNVLFDDGSVCK VARADPMRLRPALGPLNPNASCPFYPGQRVKAVNSSVYKTSRWLNGLWKASRLEGTVT KVETVAVIVYWIASAHFATNQESVPPEEQNPKDLTLLSCFSYANWQLTDWCLPNQYTS SCTDDSLIESSEIKDSDDIPESSDVKTELTQKTDMDENPGRMDGDSSADGSNMVYEDN TCLAKQSESGTIASTVPKEGSQDNATYRKKLRKVFVKKDKRTRRRDESFERALLIANT YTKVDVIWQDGTKECGASSTLLIPIHSPNDHEFFPEQYVVDKVGNDVDDSSETKRVGL VRSVNAKDRTASVSWFKPSLHPEEPREIECNEIVSAYELDGHPDYDYCYGDVVVRLPS VSLPVESTNRENTMELDNVNSTEVSATPVADAEEQFPQKESSLEFTSLSWAGNIVGFE DGDIIVIWGDGSVSKVGPHEIYVVGREDDGASLDDGTASDGASWETVDDNQTDLPDDS AQDDSQNVADSNIERENGSFNSQDGSSVATGPLSVAFGFVTRLASELFARESGDDIDK AEGENNVATSESTVVTTNDASGGKSVDVDMADKPGDSDGFKHFDVQQCPPDHHYLENM AQGTGGRKWVKKVQQEWNILEKNLPDYIYVRVFEDRMDLIRAVIIGASGTPYQDGLFF FDFHLPPEFPQVPPSAYYHSGGLRVNPNLYVDGKVCLSLLNTWTGRGNEVWDPSSSSI LQVLVSLQGLVLNEKPYFNEAGYEKQVGTVEGEKNALPYNENTYLLSLKSMLYILRRP PMHFEDFAKSHFSKRGKYILKACEAYLQGNGVGTLTDDACTTERSKEQPCSVGFKLAL AKIMPRLITALKDAGANCDQYEHLGKTETAQEH</aaseq>

Gene Sequence

<dnaseqindica>1652..3568#3646..3780#3876..4020#4096..4298#4491..4560#4664..4803#4928..5239#5580..5849#ggtggtctctctctctctctcttctctcgcctcacttcgcatcgcctccaccaccacggttcggctcggctcggctactcctctctctctctttctctcccctcctctcacctagggcacgcgcgccgccgccgccgccgcctccctcctcctccccgcgcgatcccgccgccccccgatcgaccccgccccccgatcgcccgaggtcagcacgctcccccttccctcaaccctcctcctcctcccctcccctccctatcggctccgattatctccgccgccccgttcctcggggctcgttgcggcggcgccgccccccgatctctgcgcgctggtggttccgctgcaggtagatgcgttcgagtttgtttttattgttattattgtttgttattattccgtgcccttgttttgattcggtcgcggtgcctgtagcaatcaatcgaggctggattggttaatgggatcggtggcgccgccgattggttctgggggctgattggatgggtgctctgtggattctctaagctaggttgatgttccgtacaagggtggtttgcttctgctgcgctgctagctcttgattccgttgcctgcagagttttgtttttttagttttggccgtttttgtggtgcttattagagagcaatcgcgtctaggaggtcaaaggctttgtgatttttgacgacttgtttccttaggaattagtattgaatagtagtaataaataggtaatattagcttagcagaaatcttgatacaatttccttttgttaggttgctgattataatcatgggtgaattgacctttcatcttaaaaacaatcgctcttatatctaatcttgctgaagcgtgcagtatctatctccttttctatattacactggatcatttaggttttagtggtgctcattaatcatgacaacacagctgttaagcggcaaatattgctatgctgtatgatcaatgtacatgtgagctgaaatctagtgctatatcagttcattatgatgagtcaccttgtgtttgaagttgaagtggattaatcttggtaccgtactttatcagcagcgaagttagatgtgtcagttattagtgcttccttctcgatctgcatcaagtaaacagctacatgtttagagccataagtaacggcgaggcgaataaaagatttccagagagtatagcatgtgggcaaataagctattaattacgcatgtagccaaacttgttccggttttatatatttcagtatgtctttttctctctgatgattaggattatcgaatgcaattaatgtaatatttcactttataactgaatcccatttttccccctttgtatgtattggaatcctgtatatgaaggtatgtgaagattgcagagagtatacagaagaagtatgcacaattggagatacttgccatctatgataatgaaaacatagtctttcttggaaatgaattagatatgcattcttttctgggctttaatgattgttattaattttgttgtctagactgttaacgttatgctttatgattatttttaacgccttctgtttctaatctggaacatattctttgtgtttcagtaaaatatagggcttcacgattgctgggaatctacctgcatagcttagttcaaacatggaaaatctaccaaatggctcagcaaatatagctgagaagaaccaggataatgagatgtctacagatgctggtgagcctgaagaagtagcagatatatttatttatagagaagatgttgtcagcttgaagtcaaaagaggacacccgtgggttggttttggaggtagcaggagaatatgattctgaaggtagcatcactgatgatgatactgatactgaggagcatgaacacaaaagttctcataggactgaaaatggtggtgctgatggtgataatgtcagtaatggagttgatgttgatagtcagagttcattgcctgataacaaggttagggttctatggattgatggtgtcgagaagacggaagatattgacagcgtggttgtcatggacagaagtttccttcatggagatatagtggcttctgccacagatccaactggtcagatgggacttgttgctgatgtcagccttgtggttgatttgcaaggacctcacggagaaataataaagggagtatcctctaaagatttgagacgcatcagggaatttaacgtaggtgattatgttgtctctgggccatggcttggtcgagtcgacgaggtgttggataatgttaatgtgttatttgatgacggctccgtctgtaaagtagccagggcagatcctatgcggctaaggccagcattggggccactgaatccaaatgcaagctgtcccttttatcctggacagcgtgtcaaggcagtgaattcatctgtttacaaaacatccaggtggctcaatggactatggaaagcaagtcgtcttgaaggcactgtcacaaaggtggaaacagttgcagttatagtctattggattgcatctgcacactttgccacgaatcaagaatctgttcctcctgaagagcagaacccaaaggatctgactcttttatcttgtttttcatatgcaaattggcaattaactgattggtgtcttcctaaccaatacacatcatcgtgtactgatgattctttgattgaaagttcagaaataaaagactctgatgacattcctgaatccagtgatgttaagacagaactaacgcagaagactgatatggatgaaaaccctgggaggatggatggagattcttctgctgatggatcaaatatggtttatgaagataacacatgcttagccaaacaatcagaatcaggcactattgcatcaaccgttccaaaggagggatcacaggacaatgcaacttacaggaaaaaacttaggaaagtttttgtcaaaaaggataaaagaacaagaagaagagacgagagctttgaaagggctctgcttattgcaaatacatacacgaaggttgatgtgatctggcaagatgggacaaaagaatgtggagcaagctcaacattgctcatcccgatccacagtccaaatgaccatgaattctttccggagcagtatgtcgtggacaaggttggtaatgatgttgatgattcttctgaaacaaaacgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgcatctgtatcatggtttaagccttcattacacccagaggagcccagagaaatcgagtgcaatgaaattgtgagtgcatatgaattggatggccatccagattatgattattgctatggagatgttgttgttcgcttgccatctgtttcactgcctgttgaatcaaccaatagggagaacaccatggaactggataatgtaaattctacagaagtatcggcaacccctgtagctgatgcagaggaacagtttccacagaaggaatccagtttggaatttactagcctttcatgggctggtaatatagttggttttgaagacggtgatattatagtcatttggggcgatggttcagtgtcaaaggtaattccttaacatctattaatgctgaaaatagcatttagttccaaaactaacttcatttcctgttgttttttcaggttggtccacatgaaatatatgttgttggtcgtgaagatgatggtgcctcactagatgatggaactgccagtgatggtgctagctgggagactgttgatgacaatcaaacggatttgcctgatgattctgcacaggtattatctgtctgcatctattgttgttttgcccagccattcctttcctgaagtaccttttagtttcatttgttgatcgctgcattctgtttcaggatgattcgcaaaatgtagcagatagtaacatcgaaagggaaaacggttcatttaattcgcaggatggaagctctgttgcaactggtccactttctgttgcttttggctttgtgactcggctcgcgagtgaactctttgctcgaggtaaaaagcatttagatggatcaaactcagatgctatggatgaagttgaatctcaccagtctaatgagatttcagaatctggtgatgatattgataaagctgagggggagaacaatgtggcaacatctgagagtaccgttgtaacaacaaatgacgcttccggtgggaagtctgtagatgttgatatggctgacaagcctggagattcagatggcttcaaacactttgatgttcagcagtgccctccagaccatcattacctggaaaacatggcgcaggtaaaattttattacatgacatgtatattatggtgttgttaaatgtccatatattagtaacactcctattgcattttttggaaggaccttcttgcaagagccgattatacccacagttttttttgaccattttaatattttgttggttatttagatttcttgcttataaatagctaataaatgctgtagcagggcactggtggaagaaagtgggtaaaaaaggtacagcaggaatggaacatacttgagaaaaatctaccaggtttgccatgcttcctccggtttaacctcattcaaatgctaataaaaagattgtacacaaccatattgtgatctgactgatgttagttttactgcaattgtagattatatttatgttagggtatttgaggatcgaatggacctcataagagccgtgattattggagcaagtggaacaccataccaagatggtcttttcttcttcgacttccaccttccacctgagtttccacaagttcctccggtaattgacaattacattgccttactgtccatcttttattttcatctttatttttcttatcatatctgctggtaattttttacatatgtaaatgagctcctttcatttgttaccaaatctgcagtcggcgtactatcattctggaggtttgcgcgtaaatccaaacctgtatgtggatgggaaggtctgcttaagtctcttgaatacctggacgggcagagggaatgaagtatgggatccatcatcatccagtattctccaagtcctggtttcacttcagggcttggttctaaatgaaaagccttattttaatgaagctggctatgagaagcaagttggtactgttgaaggggagaagaatgcattgccatataatgagaacacatatctgctgagcttgaaatccatgttgtatatcctgaggcgacctccaatggtaacacagctcttccctcttcgagagctatttcatttatattattctcagatattttctctttccaacttgagcctttgtttatcataagccagatacatgcatgttagatcaacatgtctatatctttatgtagtttattttggatgctaaatcctgaatcagacattcattccattgttcccattgcaatccgtgattcttctagcagacacagcaagaatttgcattgccatatagtaaaactaactctttactatgctagtagcataaagatgcttaactataccttttttacaatcttttgatcttctgattgtttaatgtactattgatgcagcatttcgaggactttgcaaagagccacttctccaagcgtggcaaatacattctcaaagcttgtgaggcctatttgcaaggtaatggggttgggacgctcacagatgatgcctgcaccaccgagagaagcaaagaacagccatgctcggtgggtttcaaactcgcattagcaaaaattatgccacggttgattactgccctgaaggacgctggagcaaattgtgaccaatatgagcaccttgggaaaacggaaactgctcaagaacactgaatgacttgtatggatatcattttttggtttcagaaagatgatcacctcacctgctgtttttcgtataaatgtacattacatttgtttcttgtttctatttaaacatttg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0125900, RefSeq:Os01g0125900