Os10g0462900

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Revision as of 08:40, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0462900| Description = contains InterPro domain(s): IPR001844, IPR002423, IPR012723, IPR008950| Version = NM_001071319.1 GI:115482381 GeneID...")
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Gene Name

Os10g0462900

Description

contains InterPro domain(s): IPR001844, IPR002423, IPR012723, IPR008950

Version

NM_001071319.1 GI:115482381 GeneID:4348824

Length

5356 bp

Definition

Oryza sativa Japonica Group Os10g0462900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:17505263..17510618

Sequence Coding Region

17505441..17505478,17505597..17505621,17506225..17506356,17506660..17506819,17507392..17507567
,17507660..17507755,17507889..17507993,17508076..17508162,17508252..17508341
,17508411..17508491,17508578..17508646,17508791..17508868,17508956..17509051
,17509359..17509458,17509586..17509689,17509774..17509879,17509973..17510051
,17510239..17510341

Expression

GEO Profiles:Os10g0462900

Genome Context

<gbrowseImage1> name=NC_008403:17505263..17510618 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:17505263..17510618 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtaccgcgcggccgccagcctcgcctccaaggctcggcaagccgggagcagcgctcgccaggttggaagcaggcttgccttgagcaggaactatgctgccaaggatatcaagtttggagttgaggcccgtgctttgatgctgaggggtgttgaggagttggcagatgcagtcaaagtgacaatgggtcctaagggacgcaatgtggttattgagcagagctatggttcaccgaaagtcacaaaggacggtgtgactgttgccaagagcattgagttcaaggatagagtcaagaatgttggtgcaagccttgtaaagcaggttgctaatgcgaccaatgatactgctggagatggtaccacttgtgctactgtattgactaaagcaatatttactgaggggtgcaagtctgttgctgctggcatgaatgcaatggatttaaggcgtggtatttcaatggctgttgatgctgttgtaactaacctaaagggcatggctagaatgatcagcacatcagaggaaatagctcaggtgggcacaatatcagcaaatggggaaagggaaattggtgagcttattgcaaaggctatggagaaggttggcaaggagggtgtaatcaccattgcggatggtaacaccctttacaatgagcttgaagttgtggaaggcatgaaacttgacagaggctacatctctccttactttgttaccaacccaaagacccagaaatgtgaactggatgaccccttgatcctgatacatgacaagaaggtttcgaacctgcatgcagtagttaaagtcttggagttggctctgaagaagcaaaggcctctgctgattgttgctgaagatgtagagagcgaggcattgggtactctgattattaacaagcttcgtgcaggcatcaaggtctgtgctgttaaagctcctgggtttggggagaacaggaaagcaaacttacaggaccttgcgatccttactggaggagaagtcataactgaagagctaggaatgaatcttgagaagttcgagcctcagatgttgggtacatgcaagaaggtaactgtatctaaggacgacactgttattcttgatggagctggagacaagaaatccattgaagagagggctgagcagattagatctgcaattgagctaagcacttctgattatgacaaggaaaagctacaggagcggttggcaaagctctccggaggtgttgctgttctaaagatcggaggagccagtgaagctgaagttggtgagaagaaggatagagtgacagatgcattgaatgccactaaagctgctgtggaagagggtattgtaccaggtggaggtgttgcacttctttatgcatcaaaggagctggataaattgccgactgctaactttgatcaaaagattggtgtacaaatcattcagaatgctttgaagacaccggtgcacactattgcttccaacgcaggtgtagaaggggctgttgttgtcggtaagcttttggaacaagataacaccgaccttggctatgatgcggctaaaggtgaatatgtggacatggtgaaggctggtatcattgacccactaaaagtgatcagaactgccttggtggatgctgcaagcgtatcatctctgatgacaaccacggaatccatcatcgtagagatcccaaaggaagagaaggaggcgccagcgatgggaggcatgggtggaatggattactaa</cdnaseq>

Protein Sequence

<aaseq>MYRAAASLASKARQAGSSARQVGSRLALSRNYAAKDIKFGVEAR ALMLRGVEELADAVKVTMGPKGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGA SLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVT NLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNEL EVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDKKVSNLHAVVKVLELALKKQR PLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILTGGEVITE ELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRSAIELSTSDYD KEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVAL LYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNTDL GYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEKEAPAM GGMGGMDY</aaseq>

Gene Sequence

<dnaseqindica>179..216#335..359#963..1094#1398..1557#2130..2305#2398..2493#2627..2731#2814..2900#2990..3079#3149..3229#3316..3384#3529..3606#3694..3789#4097..4196#4324..4427#4512..4617#4711..4789#4977..5079#gcttctagagcctcctcgcgtcttctcctctctcatcaaatcccctcgccctcctctctttcctcctccccaagaaaaaaaaaggcttcatagctcaacctcctcgccgccgccgctcacctcccctcccctcccatccctcctcctccctagccccaggtcgctgctcggctccgccatgtaccgcgcggccgccagcctcgcctccaaggctcggtgagtgtgcttgcttgattcccctcctccgcccgcattgcgatctgagtctcgcgacgcgcctgctgttctttccgacgtttgagcggtttgctgaactgtttcgttgttggtgcaggcaagccgggagcagcgctcgccaggtgagcggattcgtgatggagtggggttttgtctcgctgggtttattagtttgagttagtgtgggtgtgggagtgggagtgggaggttgtgcgtctcgttccggtttggtgatgtgtgtggggggtgggagattcgtttggggtttctgtgctgggcttcgtgaaatctgtttgaatggctagaatccactggatttacacttgaagtttgatttagtccattgtggtggtcagggatcaagtagtaccgttgatttcaattgtcgatgttgtgaaattggttgtttgctagtgtaaagatcaatgcttgctggcactcaagaaagatctatgcttttttttttctttcgaggtggcggcgaaaagatatatgcttgtttctgttagatgttatgtcagtgacgactgttgaagagttagcgacttgtttttgtgtatgtagtttagctcagaagttgaattttgctccaattgagtaagtctgcttgtgatcctcagtttctcactggtctgtaatcgtcgtgagttgatggtggtcagagttggttgtaatcaaatgaactttcttttttgctttgtttccttatatatgatgatatgtaggttggaagcaggcttgccttgagcaggaactatgctgccaaggatatcaagtttggagttgaggcccgtgctttgatgctgaggggtgttgaggagttggcagatgcagtcaaagtgacaatgggtcctaaggtataattgtgttcatgtaaatgtgtcattgtgcacttgtgtacttgtctgaatacgttaattgttttgtagctattataaatgaagttcctttgatagaaagccaaatgattggtttatgattctgaaaataactgtcataaacatggtgcaccttttctctgatgacaaaattagtctttatgtcatgctttcattgttgcagcacagtgtttgttgggcctacaactttttatgtttttattttgtcagagtgctgtgttgtgttatttgcagattggacttaacgtgtctattatgcagggacgcaatgtggttattgagcagagctatggttcaccgaaagtcacaaaggacggtgtgactgttgccaagagcattgagttcaaggatagagtcaagaatgttggtgcaagccttgtaaagcaggttgctaatgcgaccaatgatactgctggagatggtatggctgtacttgtaccattctgttgagaatacttggtccttctgttagcattctacaactttggttatatattataaacaattccagaccatctcatgttttgccttcctgtaatatttaacctgtaacttatatttacaaatatgttcattatttgcatttttgcataaagtaattcactgtatttaatttattgttggacgaaggtttgagtgtatgcagttcttatcttcattgtattcataggtgtgagttttggcattgtaatttattgttgtttgggcattttcaatcatctatcaatgctaccttgaattataatgctatatagtaccactggtttttgatagatgtcacggttgacttttttatacacaatttgttttgttaaaaaacgaaaattattattcattttgttgtgacttggtttatcatcaaaggtagtataagcatgacttacattttcacatatttgcacaaattcaatatgtggattgcattgtactttaggatttgcttagttgcataatttgtttgttctaactgtgttattctgatccaaaattcaggtaccacttgtgctactgtattgactaaagcaatatttactgaggggtgcaagtctgttgctgctggcatgaatgcaatggatttaaggcgtggtatttcaatggctgttgatgctgttgtaactaacctaaagggcatggctagaatgatcagcacatcagaggaaatagctcaggtaatacttgtgattcattgcagatctcattatgtgtttgacttgtttcttaatcttaatctgttactaagttcttatgttcatatataaaggtgggcacaatatcagcaaatggggaaagggaaattggtgagcttattgcaaaggctatggagaaggttggcaaggagggtgtaatcaccattgcggtaagttgatccaagttaaaactgaacttggcctctcttatctctatttggttggtagacttcctttagttaaaactgaacttgtgccaacactctggtttttcgttaatttgtttgcttaaacatttggtaggatggtaacaccctttacaatgagcttgaagttgtggaaggcatgaaacttgacagaggctacatctctccttactttgttaccaacccaaagacccagaaatgtgtaagtttttaacttctgttgttggttgatatgttcagtttttcttttggaactatctaagtcatgaggttatatttaacaggaactggatgaccccttgatcctgatacatgacaagaaggtttcgaacctgcatgcagtagttaaagtcttggagttggctctgaaggtatgtgtttgctttcataaaatagttgtatattgtggtggtgctactgattttcttgctataactggtcaacatcttgccttgcacagaagcaaaggcctctgctgattgttgctgaagatgtagagagcgaggcattgggtactctgattattaacaagcttcgtgcaggcatcaaggtcagtaaatactgggcatttgtgatttgaatctgtgtagttgtcctaaatgagggatgtgttgttcaggtctgtgctgttaaagctcctgggtttggggagaacaggaaagcaaacttacaggaccttgcgatccttactggaggagaagtaagtttaacaatcacctctccaagttggtgcatataaatttaaccaattgaatgcattataacctgtttattttaatgattcaggtcataactgaagagctaggaatgaatcttgagaagttcgagcctcagatgttgggtacatgcaagaaggtatgaatgattcctagaaggctggtagataagctttggctatctttggaaagaaatttgtttgaagtgtatcttttgtccgctaacatttaagatgataccagtctgttctgatggttgagtgatattccatgtccattacaggtaactgtatctaaggacgacactgttattcttgatggagctggagacaagaaatccattgaagagagggctgagcaggttcgtacaacattaattcattgcgttactagtgcattattttgaaaatcgtggttgttgatagattatataaatgctgtgttgcagattagatctgcaattgagctaagcacttctgattatgacaaggaaaagctacaggagcggttggcaaagctctccggaggtgttgctgttctaaaggtgaggttcacaatattatgtttatattgaggaatatatattgaatgaaataacaaactttccgaacattccatggttagataaaccatctgaaagagccaatgttagacagaataccagatatgttactgtgtagccacctagtgttgattctattatattgatggtaaaagcttgtgaagtctcattagagacctcacacttgtaacacacaatgatgttgagaatggaagttgaattgcactgctaggagtggtgccctgaagttatattttgacctgtatatgcatcatgacctttcctacagatcggaggagccagtgaagctgaagttggtgagaagaaggatagagtgacagatgcattgaatgccactaaagctgctgtggaagagggtattgtaccaggtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacaggtggaggtgttgcacttctttatgcatcaaaggagctggataaattgccgactgctaactttgatcaaaagattggtgtacaaatcattcagaatgctttgaaggtttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcagacaccggtgcacactattgcttccaacgcaggtgtagaaggggctgttgttgtcggtaagcttttggaacaagataacaccgaccttggctatgatgcggctaaaggtatgattgaacctttcctcattgaatatcgtaatatcccatgattgtcgtctgtagtttgttgctgatccgtgtgcgatataccttatgtaggtgaatatgtggacatggtgaaggctggtatcattgacccactaaaagtgatcagaactgccttggtggatgctgcaaggtaagctctcaagttcatggttctgtgctttagttctttacattaaattgttgatcaaacatgggtgatacactgaagcacccacctcatcccttgtgcttatttcggtttttgatctgaaatttttcacccatttaacgttacttttggctcttgcgggttcttacaagttgtttgccttctgcagcgtatcatctctgatgacaaccacggaatccatcatcgtagagatcccaaaggaagagaaggaggcgccagcgatgggaggcatgggtggaatggattactaatcaacacccattaaagtaaactaaaaacatactcctgggatttaggattttttttgcggtgcaagttcatcgtcgatgtattttttgttcttgttgatgaggtggttgtcagacaattttgattccactggcggtaggacgggttggaacgaataaaattttagttcagagctaggagttcttgagagctgaggactgcacttcgatcaaaattgaatctgacaccttgtgccggaacatttttatgagctgatctgaaagattacgccttttggcc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0462900, RefSeq:Os10g0462900