Os01g0138900

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Revision as of 04:20, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0138900| Description = Mandelate racemase/muconate lactonizing enzyme family protein| Version = NM_001048509.1 GI:115434431 GeneID:4325471| ...")
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Gene Name

Os01g0138900

Description

Mandelate racemase/muconate lactonizing enzyme family protein

Version

NM_001048509.1 GI:115434431 GeneID:4325471

Length

3109 bp

Definition

Oryza sativa Japonica Group Os01g0138900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:2073795..2076903

Sequence Coding Region

2074095..2074100,2074389..2074462,2074572..2074633,2074790..2075123,2075271..2075487
,2075575..2075685,2076304..2076840

Expression

GEO Profiles:Os01g0138900

Genome Context

<gbrowseImage1> name=NC_008394:2073795..2076903 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:2073795..2076903 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggactccgccatctccacctcctcgtccttctcgcctctcaggttgtctcagaatcatgggagcatcatgagcggtagcaccagggctcaggtgctcccggtgggcaggcagcagcagcagccacccgccggcggcgccacccgcctccgcgccgtctcgccgtcgccgtcgccgacaccgcccgcgccgcagccggcggagacgttcgggttcgatgccctcaaggaggccttctccgtcgacgtggtggcggccgaggcgcggccgctcaacgtgcccctggccgcgcccttcaccatcgcgtcgtcgcggctggacgccgtgtccaacgttgccgtccgggtggagctccggagcggcgcggtcgggtggggggaggcgcccgtgctcccctccgtcaccgccgaggaccagcccggcgcgctcgccgcggccacccgggcgtgcggcgctctggccggcgcgcccgccgcgcccctcggcgccgtgctccaggacgtcgccagtgccctcccgggacacgacttcgcctcggctagagcaggagtggagatggctttgattgatgcaattgctaacagtatccgcatccctttgtggagattatttggaggggcgtcagacagtgtcacaacagatatcacgattccaatcgtgacaccaaatgaagctgctcagttagccgcaaaatatcgaggacagggatttcagactctgaagctcaaagtcgggaagaacttaaactcagatatagaagttttgaaggctatacggcttgcccatccagattgttcatttatcttggatgcaaatgaaggatacacagctaatcaagcaattgaagctcttgatagactaaacgaaatgggagtgactccagtattgtttgagcaaccagttcatcgagatgactgggaaggtctccgcgatgttagcattgttgccaaggagaaatacagagttgctgttgcagctgatgaaagttgtcgtagtttgcttgatgctcagaaaataatggatggaaatcttgctcatgttattaacatcaagctagcaaagctagggattcttggagcccttgaagtaattgatgctgcaagaaaagcccgcattgcgctgatgataggcggtatggttgagactaggatcgctatgggctttgctggtcatcttgcagctggtcttggttgtttcagttttgttgacctggacacacctcttttactgtctgaagatccagtgttcggtggctatgaagtttctggacctgtatacaagtttacaaatgctcgaggccatggtggtttccttcacttagacaacaacggcttgaaataa</cdnaseq>

Protein Sequence

<aaseq>MDSAISTSSSFSPLRLSQNHGSIMSGSTRAQVLPVGRQQQQPPA GGATRLRAVSPSPSPTPPAPQPAETFGFDALKEAFSVDVVAAEARPLNVPLAAPFTIA SSRLDAVSNVAVRVELRSGAVGWGEAPVLPSVTAEDQPGALAAATRACGALAGAPAAP LGAVLQDVASALPGHDFASARAGVEMALIDAIANSIRIPLWRLFGGASDSVTTDITIP IVTPNEAAQLAAKYRGQGFQTLKLKVGKNLNSDIEVLKAIRLAHPDCSFILDANEGYT ANQAIEALDRLNEMGVTPVLFEQPVHRDDWEGLRDVSIVAKEKYRVAVAADESCRSLL DAQKIMDGNLAHVINIKLAKLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHL AAGLGCFSFVDLDTPLLLSEDPVFGGYEVSGPVYKFTNARGHGGFLHLDNNGLK</aaseq>

Gene Sequence

<dnaseqindica>2804..2809#2442..2515#2271..2332#1781..2114#1417..1633#1219..1329#64..600#ctcgagccattccacaaaattcggcaaaatccagtgctccagtcagtggcagtggcagtggccatggactccgccatctccacctcctcgtccttctcgcctctcaggttgtctcagaatcatgggagcatcatgagcggtagcaccagggctcaggtgctcccggtgggcaggcagcagcagcagccacccgccggcggcgccacccgcctccgcgccgtctcgccgtcgccgtcgccgacaccgcccgcgccgcagccggcggagacgttcgggttcgatgccctcaaggaggccttctccgtcgacgtggtggcggccgaggcgcggccgctcaacgtgcccctggccgcgcccttcaccatcgcgtcgtcgcggctggacgccgtgtccaacgttgccgtccgggtggagctccggagcggcgcggtcgggtggggggaggcgcccgtgctcccctccgtcaccgccgaggaccagcccggcgcgctcgccgcggccacccgggcgtgcggcgctctggccggcgcgcccgccgcgcccctcggcgccgtgctccaggacgtcgccagtgccctcccgggacacgacttcgcctcggtgagacatttcacgcaatcccgtcgaacacctgactccaatttcaccttaatcgtcgtagtctgatactctgatctaagataattactgtcacgggattcacgttgatgagtcacaactgtgcctttctttcttggcgttttctctgcagtagctgcctaatttgtgtgctggaattttgtgagaggtcattctctctggtaattggagtgttggatactgccgatatttccttgaaagcaaaagatagttttgctacaaatatgtggttgctaagtgataatacaggctcatgcccatcatatggcaacacgactcgtaattcataatcgcacatgagataaatcctagatgaacaatccaagttactcctgtaaagacccttttgggaaaaaaaaagttacctgtaaagaaccatgaattacaagcctacaataacagaggtttcacatccaaaatcaggttcacctgttcttttttaattcacatacaagtgcaataatgtaaggcatcatcaaatggttctggcctttcttttaggactacactatttcgttgtttgtttggtacaagatttatccattgatgtctattcaattgtgctcttctccaatgaaggctagagcaggagtggagatggctttgattgatgcaattgctaacagtatccgcatccctttgtggagattatttggaggggcgtcagacagtgtcacaacagatatcacggtatggccatctcagcatcctctgcattgattacagaaagcattctttcttatgaaaatcgttaatttcttctacttttgaatttagattccaatcgtgacaccaaatgaagctgctcagttagccgcaaaatatcgaggacagggatttcagactctgaagctcaaagtcgggaagaacttaaactcagatatagaagttttgaaggctatacggcttgcccatccagattgttcatttatcttggatgcaaatgaaggatacacagctaatcaagcaattgaagctcttgatagactaaacggtttgtacccctgtaaattgtaaagcttcctatattctgaaaatctttgcttttttttttgcggggaaaaaatcttagctatttaatatctgagccgtccaatcttctcctattaagctatttttttgttactgccattggtttcagaaatgggagtgactccagtattgtttgagcaaccagttcatcgagatgactgggaaggtctccgcgatgttagcattgttgccaaggagaaatacagagttgctgttgcagctgatgaaagttgtcgtagtttgcttgatgctcagaaaataatggatggaaatcttgctcatgttattaacatcaagctagcaaagctagggattcttggagcccttgaagtaattgatgctgcaagaaaagcccgcattgcgctgatgataggcggtatggttgagactaggatcgctatgggctttgctggtcatcttgcagctggtcttggttgtttcaggtttgtgtgataattatataatcattttttttccagccaaagacattgccaccagtatgattaaaatgaaaaaaaaaatgtcacattttcctgggtttctagaccttacttctgtcaaaatagccactgatgttttcccccctcttgtgaattcagttttgttgacctggacacacctcttttactgtctgaagatccagtgttcggtggctatgaaggtacaaaaacattttatttcaatctcctttgtacaatgttcgatggttaagtgaaaaaaactgttgaatgtagttcatatgacttactcaactaaacttctttcatcagtttctggacctgtatacaagtttacaaatgctcgaggccatggtggtttccttcacttagacaacaacggcttggtaagaagcatttcactcttgctgtttaagttaaatcttcatgtcctgcaatagcattgtttctagtatccaaatgtaataaaatgaagaaaacagtttttccttcaaaagcatgaacgaaacagtttggaaccaaattataatcaaatttacctatcaaacatggtaacaaccagaggcacctattcagattgaccagtataaaatggtgttcttattttaatgcaaatggtctcctcagtgactaaaaagatgtataactgattggtatatcattttattttacagaaataaggaatgccctagccctttgggagcttcacagacaacggtgacacgttcaatgaacaattaattgttcattatttaccttcaacaataatcaattggagttgaaaccaaaggagcagttgtaaacttgtaatcctatatgaccttgaagaggctaattattgttgccagtccagttaggcctgaaatatttgatcagtctgtagatggataaaataatgaggcattttcagctggccttgttgttctgttcgataaataaattactaaatatggtataaaagaccttatgtatgcagcctc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0138900, RefSeq:Os01g0138900